View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_226 (Length: 215)
Name: NF3772_low_226
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_226 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 32070131 - 32070340
Alignment:
| Q |
1 |
ctctccaggtatctcatcatcctaaacaggcttaagttcattatacttacacattctagcaaaatgtttaaactctaggtctatgcttcttgttgacgat |
100 |
Q |
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| T |
32070131 |
ctctcccggtatctcatcatcctaaacacgcttaagttcattatacttacacattctagcaaaatgtttaaactctagatctatgcttcttgttgacgat |
32070230 |
T |
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| Q |
101 |
gatttcttcagagtcaacctatatgcattctagcaaaagcttataaaaagctaccttagcttgtgctccaagtatgttttcaatgaaaaacttttggaaa |
200 |
Q |
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|||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32070231 |
gatttcttcacagtcaacctatatgcgttctagcaaaagcttataaaaagctac-----cttgtgctccaagtatgttttcaatgaaaaactcttggaaa |
32070325 |
T |
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| Q |
201 |
atattagtaacactt |
215 |
Q |
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||||||||||||||| |
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| T |
32070326 |
atattagtaacactt |
32070340 |
T |
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