View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_227 (Length: 215)
Name: NF3772_low_227
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_227 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 16 - 200
Target Start/End: Original strand, 1462431 - 1462615
Alignment:
| Q |
16 |
caaaggcgacaatcatttatatatttatcatatttaagttgttttggacacggacatttctcagacacactttggacacctcttaatgatgtccaattaa |
115 |
Q |
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| T |
1462431 |
caaaggcgacaatcatttatatatttatcatatttaagttgttttggacacggacacttctcagacacactttggacaccttttaatgatgtccaattaa |
1462530 |
T |
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| Q |
116 |
aaagtgtttaacaccttttctctttgtatgaaattgcagaacacaaatatgaaattgtcaagaggcttcaagagaggaagcatat |
200 |
Q |
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| T |
1462531 |
aaagtgtttaaccccttttctctttgtatgaaattgcagaacacaaatatgaaattgtcaagaggcttcaagagaggaagcatat |
1462615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 200
Target Start/End: Complemental strand, 1497096 - 1497025
Alignment:
| Q |
129 |
ccttttctctttgtatgaaattgcagaacacaaatatgaaattgtcaagaggcttcaagagaggaagcatat |
200 |
Q |
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| T |
1497096 |
ccttttatctttgtttgatatggtagagcacaaatacgaaatcgtcaagaggctgcaagagaagaagcatat |
1497025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 200
Target Start/End: Original strand, 50276096 - 50276165
Alignment:
| Q |
131 |
ttttctctttgtatgaaattgcagaacacaaatatgaaattgtcaagaggcttcaagagaggaagcatat |
200 |
Q |
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| T |
50276096 |
ttttctctttctatgacatggtagaacacaaatatgaaatcgtaaagaagctgcaagagaggaaacatat |
50276165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 200
Target Start/End: Original strand, 26790295 - 26790364
Alignment:
| Q |
131 |
ttttctctttgtatgaaattgcagaacacaaatatgaaattgtcaagaggcttcaagagaggaagcatat |
200 |
Q |
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| T |
26790295 |
ttttctctctgtataatatggtagaacacaagtatgaaattgttaagaggctccaagaaaggaaacatat |
26790364 |
T |
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