View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_23 (Length: 488)
Name: NF3772_low_23
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 31 - 472
Target Start/End: Complemental strand, 54852657 - 54852219
Alignment:
| Q |
31 |
catgaacagccttcacatttcgctgaacacaactgccgcaatttgaaattcaagaagcccaccacaccaaacatacatgaatgtatattgctccacacat |
130 |
Q |
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| T |
54852657 |
catgaacagccttcacatttcgctgaacacaactgccgcaatttgaaattcaagaagcccaccacaccaaacatacttgaatgtatattgctccacactt |
54852558 |
T |
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| Q |
131 |
ttgaaataaattctcagtcctatacttcctctcaagctgcccaaagatatgaaatttggcctgaccaagatacgaaggaatggcacttccaaaaaatacc |
230 |
Q |
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| T |
54852557 |
ttgaaataaattctcagtcctatacttcctctcaagctgcccaaagatatgaaatttggcctgactaagatacgaaggaatggcacttccaaaaaatacc |
54852458 |
T |
|
| Q |
231 |
acaaaataatctaagatatgagccaatactcgacaaaaactcccaatgctccccagctgcaactcaaaatttcgaacctcaaagatcaaataccatcacc |
330 |
Q |
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| T |
54852457 |
acaaaataatctaagatatgagccaatactcgacaaaaactcccaatgctccccagctgcaactcaaaatttcgaacctcaaagatcaaataccatcacc |
54852358 |
T |
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| Q |
331 |
actaaatacaaagtatgctatacatatccacagcggaactatccgactattgcccaaccgagacagcaaaagcagaaatagtgctatcccaaccaagaaa |
430 |
Q |
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|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
54852357 |
actaaatacaaagtatgctacacatatccacggcggaactatccgactattgcccaaccgagacagcaaaagcagaaatagtgctatccca---aagaaa |
54852261 |
T |
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| Q |
431 |
cagcgcacaaaacctgtagactatatacacagtccacaagaa |
472 |
Q |
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| T |
54852260 |
cagcgcacaaaacctgtagactatatacacagtccacaagaa |
54852219 |
T |
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