View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_25 (Length: 478)
Name: NF3772_low_25
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 16 - 454
Target Start/End: Complemental strand, 39916321 - 39915870
Alignment:
| Q |
16 |
ataggtcggcccaatcatgttaaatgtaaatcctttcaccacatacatatcctcatgtactat----catcaacatgagacatgaactaactag----gg |
107 |
Q |
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| T |
39916321 |
ataggtcggcccaatcatgttaaatgtaaatcctttcaccacatacatatcctcatgtactatatatcatcaacatgagacatgaactaactaattaagg |
39916222 |
T |
|
| Q |
108 |
tgggtgtgaatgatattttttgatgcaaatgagttgtgaatgatgatgatgaatcaaagttagtaaattatatttgtcggtagagtgaagttaacaagga |
207 |
Q |
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| T |
39916221 |
tgggtgtgaatgatattttttgatgcaaatgagttgtgaatgatgatgatgaatcaaagttagtaaattatatttgtcggtagagtgaagttaacaagga |
39916122 |
T |
|
| Q |
208 |
ttgagctggttacagcagcaaggcaagtcctattcaatatatgtctattccatatagtaagaattaatacttattgaagcaaagctgtgtctttgtcatt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39916121 |
ttgagctggttacagcagcaaggcaagtcctattcaatatatgtctattccatatagtaagaattaatacttattgaagcaaagctgtgtctttgtcatt |
39916022 |
T |
|
| Q |
308 |
ccatttatgatatta-tcagcatgtgtgccgccatgcattccgatctatcacacaccttagcttctttagttgcttctaaacttcccctacatttatttc |
406 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39916021 |
ccatttatgatattattcagcatgtgtgccgccatgcattccgatctatcacacaccttagcttctttagttgcttctaaacttcccctacatttatttc |
39915922 |
T |
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| Q |
407 |
atttaattaatttaattaagtacta----ctatagtatttgtcttccttcct |
454 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39915921 |
atttaattaatttaattaagtactactagctatagtatttgtcttccttcct |
39915870 |
T |
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