View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3772_low_28 (Length: 470)

Name: NF3772_low_28
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3772_low_28
NF3772_low_28
[»] chr8 (1 HSPs)
chr8 (267-443)||(11493627-11493803)
[»] chr5 (1 HSPs)
chr5 (302-460)||(42518955-42519113)
[»] chr6 (2 HSPs)
chr6 (282-446)||(9427691-9427855)
chr6 (289-446)||(1035045-1035202)
[»] chr4 (4 HSPs)
chr4 (324-396)||(36450873-36450945)
chr4 (137-209)||(36451035-36451107)
chr4 (137-209)||(25970468-25970540)
chr4 (324-396)||(25970630-25970702)
[»] chr1 (2 HSPs)
chr1 (137-209)||(47334565-47334637)
chr1 (324-396)||(47334727-47334799)


Alignment Details
Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 267 - 443
Target Start/End: Complemental strand, 11493803 - 11493627
Alignment:
Q  267 tttcaacaatgaaacactagataactatcgtagtaagatgacagatttatcataaataattttaaagcttgtgttaatgagcttaggagaaggatttgag 366  Q
    |||||||| ||| |||||||| |||||| |||| |||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  11493803 tttcaacagtgagacactagagaactattgtagcaagatggcagatttatcagaaagaattttaaagcttgtgttaatgagcttaggagaaggatttgag 11493704  T
Q  367 aagcaattttatgattcttaattcaaaaaatgtcaaggttacttaaaaataaacagctataaatcatcagaaatttt 443  Q
    |||| ||||||||||||  ||||||||||||||||||||||||||| |||||||| ||||| |||| ||||||||||    
T  11493703 aagctattttatgattcagaattcaaaaaatgtcaaggttacttaagaataaacaactatacatcaccagaaatttt 11493627  T

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Target: chr5 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 302 - 460
Target Start/End: Complemental strand, 42519113 - 42518955
Alignment:
Q  302 agatgacagatttatcataaataattttaaagcttgtgttaatgagcttaggagaaggatttgagaagcaattttatgattcttaattcaaaaaatgtca 401  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||| ||||||||||||||||    
T  42519113 agatgacagatttatcgtaaagaattttaaagcttgtgttaatgagcttaggataagaatttgagaagcaattttataattctgaattcaaaaaatgtca 42519014  T
Q  402 aggttacttaaaaataaacagctataaatcatcagaaattttccatatggtagtctgtg 460  Q
    ||||||||||| |||||||| ||||| ||||||| |||  || ||||||||||| ||||    
T  42519013 aggttacttaagaataaacaactatacatcatcaaaaaaatttcatatggtagtgtgtg 42518955  T

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Target: chr6 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 282 - 446
Target Start/End: Original strand, 9427691 - 9427855
Alignment:
Q  282 actagataactatcgtagtaagatgacagatttatcataaataattttaaagcttgtgttaatgagcttaggagaaggatttgagaagcaattttatgat 381  Q
    |||||| |||||| ||||||||||||||||||||| | ||| |||||||||| || |||||||||||||||||||||||||||||||   ||||||||||    
T  9427691 actagagaactattgtagtaagatgacagatttattagaaagaattttaaagtttatgttaatgagcttaggagaaggatttgagaaattattttatgat 9427790  T
Q  382 tcttaattcaaaaaatgtcaaggttacttaaaaataaacagctataaatcatcagaaattttcca 446  Q
    | | |||||||||||| |||||||||||||| |||||||| ||||| |||| |||||||||||||    
T  9427791 tttaaattcaaaaaatatcaaggttacttaagaataaacaactatacatcaccagaaattttcca 9427855  T

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Target: chr6; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 289 - 446
Target Start/End: Complemental strand, 1035202 - 1035045
Alignment:
Q  289 aactatcgtagtaagatgacagatttatcataaataattttaaagcttgtgttaatgagcttaggagaaggatttgagaagcaattttatgattcttaat 388  Q
    |||||| |||||||||||||| |||||||| ||| |||||||||| || ||||||||||||||||||||||||| |||||   ||||||||||||| |||    
T  1035202 aactattgtagtaagatgacatatttatcagaaagaattttaaagtttatgttaatgagcttaggagaaggattcgagaaattattttatgattctaaat 1035103  T
Q  389 tcaaaaaatgtcaaggttacttaaaaataaacagctataaatcatcagaaattttcca 446  Q
    |||||||||||||||||||||||| |||||||| ||||| |||| |||||| ||||||    
T  1035102 tcaaaaaatgtcaaggttacttaagaataaacaactatacatcaccagaaactttcca 1035045  T

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Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 324 - 396
Target Start/End: Complemental strand, 36450945 - 36450873
Alignment:
Q  324 aattttaaagcttgtgttaatgagcttaggagaaggatttgagaagcaattttatgattcttaattcaaaaaa 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  36450945 aattttaaagcttgtgttaatgagcttaggagaaggatttgagaagctattttatgattctgaattcaaaaaa 36450873  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 137 - 209
Target Start/End: Complemental strand, 36451107 - 36451035
Alignment:
Q  137 ttagattttgttgagtcaaagcttaaaaaaggcaatcaaattaagaagcaagtatatatttaggataggacca 209  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  36451107 ttagattttgttgagtcaaagcttaaaaaaggcaatcaaactaagaagcaggtatatatttaggataggacca 36451035  T

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Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 137 - 209
Target Start/End: Original strand, 25970468 - 25970540
Alignment:
Q  137 ttagattttgttgagtcaaagcttaaaaaaggcaatcaaattaagaagcaagtatatatttaggataggacca 209  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  25970468 ttagattttgttgagtcaaaacttaaaaaaggcaatcaaactaagaagcaggtatatatttaggataggacca 25970540  T

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Target: chr4; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 324 - 396
Target Start/End: Original strand, 25970630 - 25970702
Alignment:
Q  324 aattttaaagcttgtgttaatgagcttaggagaaggatttgagaagcaattttatgattcttaattcaaaaaa 396  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||    
T  25970630 aattttaaagcttgtgttaatgagtttaggagaaggatttgagaagctattttatgattctgaattcaaaaaa 25970702  T

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Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 137 - 209
Target Start/End: Original strand, 47334565 - 47334637
Alignment:
Q  137 ttagattttgttgagtcaaagcttaaaaaaggcaatcaaattaagaagcaagtatatatttaggataggacca 209  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  47334565 ttagattttgtcgagtcaaagcttaaaaaaggcaatcaaactaagaagcaggtatatatttaggataggacca 47334637  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 324 - 396
Target Start/End: Original strand, 47334727 - 47334799
Alignment:
Q  324 aattttaaagcttgtgttaatgagcttaggagaaggatttgagaagcaattttatgattcttaattcaaaaaa 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||    
T  47334727 aattttaaagcttgtgttaatgagcttaggagaaggatttgagaagttattttatgattctgaattcaaaaaa 47334799  T

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