View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3772_low_3 (Length: 922)

Name: NF3772_low_3
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3772_low_3
NF3772_low_3
[»] chr6 (16 HSPs)
chr6 (18-912)||(8330266-8331161)
chr6 (834-912)||(8337761-8337839)
chr6 (834-912)||(8342208-8342286)
chr6 (232-324)||(7164709-7164800)
chr6 (232-345)||(5641679-5641791)
chr6 (237-345)||(6228254-6228362)
chr6 (18-64)||(8337049-8337095)
chr6 (237-343)||(17216953-17217059)
chr6 (241-338)||(7929072-7929169)
chr6 (220-320)||(9763453-9763553)
chr6 (237-346)||(18903361-18903470)
chr6 (232-320)||(9455858-9455945)
chr6 (237-320)||(20415556-20415639)
chr6 (295-337)||(25069864-25069906)
chr6 (280-318)||(31789576-31789614)
chr6 (263-344)||(31802051-31802131)
[»] scaffold0595 (1 HSPs)
scaffold0595 (834-912)||(6498-6576)
[»] chr1 (26 HSPs)
chr1 (220-338)||(35195587-35195706)
chr1 (220-324)||(19424060-19424165)
chr1 (237-338)||(22779223-22779324)
chr1 (237-324)||(27980127-27980215)
chr1 (237-345)||(50065003-50065111)
chr1 (237-344)||(24134618-24134725)
chr1 (220-345)||(29332279-29332403)
chr1 (237-338)||(14262715-14262816)
chr1 (237-345)||(50011500-50011608)
chr1 (237-320)||(48497207-48497290)
chr1 (242-320)||(41160861-41160939)
chr1 (239-320)||(8893878-8893959)
chr1 (237-286)||(10123047-10123096)
chr1 (298-338)||(1862894-1862934)
chr1 (238-338)||(40209910-40210010)
chr1 (263-318)||(15775762-15775817)
chr1 (294-345)||(24253694-24253745)
chr1 (237-320)||(25031491-25031574)
chr1 (237-347)||(3347697-3347807)
chr1 (280-318)||(4482607-4482645)
chr1 (280-338)||(12662691-12662749)
chr1 (240-346)||(34702310-34702416)
chr1 (263-344)||(2352557-2352637)
chr1 (237-338)||(23368726-23368827)
chr1 (240-345)||(35309718-35309822)
chr1 (237-338)||(43109232-43109333)
[»] chr7 (23 HSPs)
chr7 (232-347)||(15025147-15025262)
chr7 (220-345)||(5228064-5228189)
chr7 (240-338)||(23602274-23602372)
chr7 (232-338)||(46243291-46243397)
chr7 (238-345)||(25775608-25775715)
chr7 (240-338)||(29357801-29357898)
chr7 (237-345)||(40273814-40273922)
chr7 (220-338)||(26606085-26606204)
chr7 (237-346)||(48433704-48433813)
chr7 (237-345)||(24029978-24030086)
chr7 (237-320)||(10091451-10091533)
chr7 (238-333)||(25770037-25770132)
chr7 (280-346)||(46570008-46570074)
chr7 (240-345)||(37665737-37665842)
chr7 (238-338)||(9668811-9668909)
chr7 (237-320)||(28914871-28914955)
chr7 (237-273)||(48619861-48619897)
chr7 (237-320)||(4956086-4956169)
chr7 (237-320)||(12166100-12166183)
chr7 (263-318)||(12640581-12640636)
chr7 (263-318)||(46534740-46534795)
chr7 (263-344)||(3766809-3766889)
chr7 (237-338)||(31793468-31793569)
[»] chr4 (19 HSPs)
chr4 (232-344)||(38690660-38690772)
chr4 (237-337)||(11491213-11491313)
chr4 (240-324)||(45847923-45848007)
chr4 (220-338)||(49811384-49811502)
chr4 (237-338)||(16556451-16556552)
chr4 (237-346)||(46283114-46283223)
chr4 (232-316)||(22525411-22525494)
chr4 (237-319)||(56555568-56555649)
chr4 (237-338)||(29430497-29430598)
chr4 (238-338)||(13539835-13539933)
chr4 (237-317)||(26885394-26885474)
chr4 (237-345)||(37574266-37574373)
chr4 (237-344)||(40406954-40407062)
chr4 (510-556)||(8089219-8089265)
chr4 (240-338)||(24570210-24570308)
chr4 (240-338)||(43362165-43362263)
chr4 (237-347)||(50815698-50815808)
chr4 (237-286)||(2832065-2832114)
chr4 (261-310)||(45741506-45741555)
[»] chr3 (19 HSPs)
chr3 (232-345)||(49429454-49429566)
chr3 (237-345)||(50381707-50381815)
chr3 (220-345)||(166781-166907)
chr3 (238-325)||(37756408-37756495)
chr3 (232-347)||(45431618-45431733)
chr3 (220-320)||(1102672-1102773)
chr3 (220-344)||(27394502-27394626)
chr3 (237-338)||(50676861-50676962)
chr3 (237-345)||(33528199-33528307)
chr3 (235-344)||(29226320-29226429)
chr3 (263-318)||(6919955-6920010)
chr3 (242-336)||(5558085-5558179)
chr3 (237-346)||(2259149-2259257)
chr3 (240-273)||(9738421-9738454)
chr3 (237-346)||(32421340-32421449)
chr3 (237-338)||(39739274-39739375)
chr3 (237-346)||(46798574-46798683)
chr3 (232-345)||(50271723-50271835)
chr3 (263-344)||(52974045-52974125)
[»] chr2 (17 HSPs)
chr2 (236-345)||(20375586-20375695)
chr2 (240-336)||(6866510-6866606)
chr2 (235-345)||(20435774-20435884)
chr2 (237-322)||(33613599-33613684)
chr2 (239-323)||(29090431-29090514)
chr2 (239-346)||(24202142-24202249)
chr2 (239-346)||(43684271-43684377)
chr2 (220-325)||(42541169-42541274)
chr2 (237-338)||(42678318-42678419)
chr2 (237-345)||(3330195-3330303)
chr2 (263-318)||(18694808-18694863)
chr2 (263-318)||(36005465-36005520)
chr2 (237-320)||(37886219-37886301)
chr2 (263-344)||(20296416-20296496)
chr2 (237-338)||(27463521-27463621)
chr2 (237-338)||(31605499-31605599)
chr2 (263-344)||(39408682-39408762)
[»] chr5 (11 HSPs)
chr5 (238-338)||(20191442-20191541)
chr5 (232-325)||(34729485-34729577)
chr5 (237-345)||(38503251-38503359)
chr5 (237-344)||(31250141-31250248)
chr5 (237-338)||(43227866-43227967)
chr5 (240-345)||(3294076-3294181)
chr5 (237-345)||(4395845-4395953)
chr5 (263-318)||(2328615-2328670)
chr5 (263-318)||(42320340-42320395)
chr5 (240-338)||(9628117-9628215)
chr5 (220-273)||(15680877-15680931)
[»] chr8 (17 HSPs)
chr8 (237-344)||(1032564-1032671)
chr8 (237-345)||(41454821-41454929)
chr8 (237-320)||(38289229-38289312)
chr8 (237-320)||(43413880-43413963)
chr8 (248-338)||(36103927-36104017)
chr8 (237-338)||(4259859-4259960)
chr8 (237-346)||(19733063-19733172)
chr8 (294-334)||(18080943-18080983)
chr8 (237-345)||(38063970-38064078)
chr8 (263-318)||(94503-94558)
chr8 (263-318)||(13406623-13406678)
chr8 (220-273)||(8145838-8145892)
chr8 (237-275)||(11052578-11052616)
chr8 (240-338)||(41845426-41845524)
chr8 (237-338)||(22652683-22652784)
chr8 (237-338)||(34037942-34038043)
chr8 (263-344)||(37717361-37717441)
[»] scaffold0001 (1 HSPs)
scaffold0001 (237-345)||(419705-419813)
[»] scaffold0072 (1 HSPs)
scaffold0072 (235-314)||(17725-17804)
[»] scaffold0608 (1 HSPs)
scaffold0608 (280-318)||(8989-9027)
[»] scaffold0009 (1 HSPs)
scaffold0009 (265-318)||(266691-266744)


Alignment Details
Target: chr6 (Bit Score: 675; Significance: 0; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 675; E-Value: 0
Query Start/End: Original strand, 18 - 912
Target Start/End: Original strand, 8330266 - 8331161
Alignment:
Q  18 gatagtacaacatggagttgcagtggtaagttataacaatgcatcaannnnnnnatcctatttcaattagtgttgtcattttctcaagnnnnnnntcaag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       || |||||||||||||| ||||||||||||||||       |||||    
T  8330266 gatagtacaacatggagttgcagtggtaagttataacaatgcatcaatttttttattctatttcaattagtattgtcattttctcaagaaaaaaatcaag 8330365  T
Q  118 ttaattttgtgttagaactagaaaatgaagaaaagatcaaccaccctttaatatatgttatgtttcattgcatgaacctgactctcaatatttgannnnn 217  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  8330366 ttaattttgtgttagaactggaaaatgaagaaaagatcaaccaccctttaatatatgttatgtttcattgcatgaacctgactctcaatatttgattttt 8330465  T
Q  218 nngtcaagtagcatgcggatagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatccc 317  Q
      |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||     
T  8330466 ttgtcaagtagcatgcggctagagaaattcaccttaaaggtgaataagtggagtgttttggcttcgaactccggtccctacatataatatgtattatcct 8330565  T
Q  318 ttatcaagagagttaagctcagggggactgattgtaattagaagacttaaataactataatgatacattaattagaaattaattatatgcttgttcaatt 417  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8330566 ttatcaagagagttaagctcaaggggactgattgtaattagaagagttaaataactataatgatacattaattagaaattaattataagcttgttcaatt 8330665  T
Q  418 ttactttaggaagtcacaacaataacacattcatgtgagtttagttcaatagatagcgacatcgcataatatatgtatagatggagttcaacttcgaact 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| |||||||||||||| ||||||||||    
T  8330666 ttactttaggaagtcacaacaataacacattcatgtgagtttagttcagtagatagggacattgcataatatatatatagatggagttcgacttcgaact 8330765  T
Q  518 tcggacaccacatgtcttcacatttaatatgtgtgaacttgatcactagactactagagccaaaaacattaacccataacgcaagtgactgataaattct 617  Q
    || |||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||    
T  8330766 tcagacaccacatttcttcacatttaatatgtgtgaacttgaacactagactactagaaccaaaaacattaacacataacacaagtgactgataaattct 8330865  T
Q  618 tccnnnnnnngtgcatgataattgaggaaag-nnnnnnntgaggcaacaatattttaatcatacacaatttataaaatcctactatctaagtctcaatgg 716  Q
    |||       ||||||||||||||| |||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8330866 tccaaaaaaagtgcatgataattgatgaaagaaaaaaaatgaggcaacaatattttaatcatacacaatttataaaatcctactatctaagtctcaatgg 8330965  T
Q  717 cttctaatatcaaatatgaatggtctttataacaagtaacctttacaaaatctaatataaataatgctatattattgatgcaaattaaggaacttaattc 816  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8330966 cttctaatatcaaatatgaatggtctttataacaagtatcctttacaaaatctaatataaattatgctatattattgatgcaaattaaggaacttaattc 8331065  T
Q  817 tatattactatactatagttgaatattttgagacttgcttgtgagcaggatggagcaacatggtttctgaacagtccaaagcaaaacctgcctatg 912  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8331066 tatattactaaactatagttgaatattttgagacttgcttgtgagcaggatggagcaacatggtttctgaacagtccaaagcaaaacctgcctatg 8331161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 834 - 912
Target Start/End: Original strand, 8337761 - 8337839
Alignment:
Q  834 gttgaatattttgagacttgcttgtgagcaggatggagcaacatggtttctgaacagtccaaagcaaaacctgcctatg 912  Q
    |||| |||||||||| |||  ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8337761 gttgcatattttgagtctttgttgtgtgcaggatggagcaacatggtttttgaacagtccaaagcaaaacctgcctatg 8337839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 834 - 912
Target Start/End: Original strand, 8342208 - 8342286
Alignment:
Q  834 gttgaatattttgagacttgcttgtgagcaggatggagcaacatggtttctgaacagtccaaagcaaaacctgcctatg 912  Q
    ||||||||||||||| |||  ||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  8342208 gttgaatattttgagtctttgttgtgtgcaggatggagcaacatggtttttgaacagtccaaagcaaaaccttcctatg 8342286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 232 - 324
Target Start/End: Complemental strand, 7164800 - 7164709
Alignment:
Q  232 gcggatagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaa 324  Q
    |||| |||||||||||||||||||| ||||||||||| ||| |  || ||||||||||||  ||| ||||||| |||||||||||||||||||    
T  7164800 gcggctagagaaattcaccttaaaggtgaataagtggggtggtcggggttcgaactccggcccctacatataa-atgcattatcccttatcaa 7164709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 232 - 345
Target Start/End: Original strand, 5641679 - 5641791
Alignment:
Q  232 gcggatagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagtt 331  Q
    |||| |||||||||||||||||||| ||||||||||| ||||   |  ||||||| |||| ||||||||| | |||||||||||| ||| |||| |||||    
T  5641679 gcggctagagaaattcaccttaaaggtgaataagtggggtgtccggagttcgaaccccgg-tcctgcataaattatgcattatccattaccaagtgagtt 5641777  T
Q  332 aagctcagggggac 345  Q
    |||| || ||||||    
T  5641778 aagcccacggggac 5641791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 237 - 345
Target Start/End: Original strand, 6228254 - 6228362
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    |||||||||||||||||||| ||||||||||| ||||   || ||||||| ||||  |||||| ||| | |||||||||||||| |||  ||| ||||||    
T  6228254 tagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggcccctgcacatattgtgcattatcccttaccaaatgagctaagct 6228353  T
Q  337 cagggggac 345  Q
    || ||||||    
T  6228354 catggggac 6228362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 8337049 - 8337095
Alignment:
Q  18 gatagtacaacatggagttgcagtggtaagttataacaatgcatcaa 64  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||    
T  8337049 gatagtacaacatggagttgcagtggtaagttacaacaatccatcaa 8337095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 237 - 343
Target Start/End: Complemental strand, 17217059 - 17216953
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    |||||||||||||||||||| ||||||||||| ||||   |  |||||||||||   ||| || ||| |||||||||||||||| |||  ||| ||||||    
T  17217059 tagagaaattcaccttaaagatgaataagtggggtgtccggagttcgaactccgacccctacacatattatgcattatcccttaccaaatgagctaagct 17216960  T
Q  337 caggggg 343  Q
    || ||||    
T  17216959 catgggg 17216953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 241 - 338
Target Start/End: Original strand, 7929072 - 7929169
Alignment:
Q  241 gaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagctca 338  Q
    |||||||| ||| ||  |||||||||||  ||| | || || ||||||||||  ||||||||| |||| |||||||||||||||| ||||||| ||||    
T  7929072 gaaattcatctttaaagtgaataagtgggatgtatggggtttgaactccggtctctgcatatattatgtattatcccttatcaagtgagttaaactca 7929169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 220 - 320
Target Start/End: Complemental strand, 9763553 - 9763453
Alignment:
Q  220 gtcaagtagcat-gcggatagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatccct 318  Q
    |||||||||||| | || ||||||||||||||||||||| |||||||||| || ||  || || |||| ||||  | ||||||||||||||||| |||||    
T  9763553 gtcaagtagcatagtggctagagaaattcaccttaaagt-gaataagtggggttttcggggttggaaccccggcccatgcatataatatgcattgtccct 9763455  T
Q  319 ta 320  Q
    ||    
T  9763454 ta 9763453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 237 - 346
Target Start/End: Original strand, 18903361 - 18903470
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    |||||||||||||||||||| ||||||||||| ||||   || ||||||| ||||  |||||| ||| | || ||||||||||  |||  ||| ||||||    
T  18903361 tagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggcccctgcacatattgtgtattatcccttgccaaatgagctaagct 18903460  T
Q  337 cagggggact 346  Q
    || |||||||    
T  18903461 catggggact 18903470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 232 - 320
Target Start/End: Complemental strand, 9455945 - 9455858
Alignment:
Q  232 gcggatagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatccctta 320  Q
    |||| |||| ||||||| ||||||| ||||||||||| |||||| || |||||||||||   ||| |||| || |||||||||||||||    
T  9455945 gcggctagaaaaattcaacttaaaggtgaataagtggggtgtttggggttcgaactccgacccctacatacaa-atgcattatccctta 9455858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 237 - 320
Target Start/End: Original strand, 20415556 - 20415639
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatccctta 320  Q
    |||||||||||||||||||| ||||||||||| ||||   || ||||||| | ||  |||||| ||| | ||||||||||||||    
T  20415556 tagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccctggcccctgcacatattgtgcattatccctta 20415639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 295 - 337
Target Start/End: Complemental strand, 25069906 - 25069864
Alignment:
Q  295 ctgcatataatatgcattatcccttatcaagagagttaagctc 337  Q
    |||||||||||||||||||||| |||||||  |||||||||||    
T  25069906 ctgcatataatatgcattatcctttatcaaatgagttaagctc 25069864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 280 - 318
Target Start/End: Original strand, 31789576 - 31789614
Alignment:
Q  280 ttcgaactccggttcctgcatataatatgcattatccct 318  Q
    |||||||||||| |||||||||||||||||| |||||||    
T  31789576 ttcgaactccggctcctgcatataatatgcaatatccct 31789614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 344
Target Start/End: Complemental strand, 31802131 - 31802051
Alignment:
Q  263 aagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagctcaggggga 344  Q
    |||||||||||   || ||||||| |||| |||||||||||||||||| |||||| || |||  |||||||||||| |||||    
T  31802131 aagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccc-taccaactgagttaagctcacgggga 31802051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0595 (Bit Score: 59; Significance: 2e-24; HSPs: 1)
Name: scaffold0595
Description:

Target: scaffold0595; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 834 - 912
Target Start/End: Original strand, 6498 - 6576
Alignment:
Q  834 gttgaatattttgagacttgcttgtgagcaggatggagcaacatggtttctgaacagtccaaagcaaaacctgcctatg 912  Q
    ||||||||||||||| |||  ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6498 gttgaatattttgagtctttgttgtgtgcaggatggagcaacatggtttctgaacagtccaaagcaaaaccttcctatg 6576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 1e-22; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 220 - 338
Target Start/End: Original strand, 35195587 - 35195706
Alignment:
Q  220 gtcaagtagcat-gcggatagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatccct 318  Q
    |||||||||| | |||| |||||||||| ||||||||| ||||||||||||||||   || ||||||| | ||| |||||||||||||||||||||||||    
T  35195587 gtcaagtagcctagcggctagagaaatttaccttaaaggtgaataagtggagtgtacggggttcgaaccctggtccctgcatataatatgcattatccct 35195686  T
Q  319 tatcaagagagttaagctca 338  Q
    ||| ||| ||| ||||||||    
T  35195687 tattaagtgagctaagctca 35195706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 220 - 324
Target Start/End: Complemental strand, 19424165 - 19424060
Alignment:
Q  220 gtcaagtagcat-gcggatagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatccct 318  Q
    |||||||||| | |||| |||||||||||||||||||| ||||||||||| ||||   || ||||||| |||   |||||||||||||||||||||||||    
T  19424165 gtcaagtagcctagcggctagagaaattcaccttaaaggtgaataagtggggtgtccggggttcgaaccccgacccctgcatataatatgcattatccct 19424066  T
Q  319 tatcaa 324  Q
    ||||||    
T  19424065 tatcaa 19424060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 237 - 338
Target Start/End: Complemental strand, 22779324 - 22779223
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    ||||||||||||  |||||| ||||||||||| |||||| || ||||||| |||  ||||| ||| |||||||||||||||||| |||| ||| ||||||    
T  22779324 tagagaaattcattttaaaggtgaataagtggggtgtttggggttcgaaccccgactcctgtataaaatatgcattatcccttaccaagtgagctaagct 22779225  T
Q  337 ca 338  Q
    ||    
T  22779224 ca 22779223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 237 - 324
Target Start/End: Original strand, 27980127 - 27980215
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatata-atatgcattatcccttatcaa 324  Q
    |||||||||| ||||||||| ||||||||||| |||||  || ||| ||||||||||| |||||||| ||||| |||||||||||||||    
T  27980127 tagagaaatttaccttaaaggtgaataagtggggtgttaggggttcaaactccggttcatgcatatatatatgtattatcccttatcaa 27980215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 237 - 345
Target Start/End: Complemental strand, 50065111 - 50065003
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    |||||||||||||||||||| ||||||||||| ||||    | ||||||| ||||| |||||| ||| | ||||||||||||||||||  ||| ||||||    
T  50065111 tagagaaattcaccttaaagatgaataagtggggtgtccgagattcgaaccccggtccctgcacatattgtgcattatcccttatcaaatgagctaagct 50065012  T
Q  337 cagggggac 345  Q
     | ||||||    
T  50065011 tatggggac 50065003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 237 - 344
Target Start/End: Original strand, 24134618 - 24134725
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    |||||||||||||||||||| ||||||||||| ||||   || ||||||| ||||  |||||| ||| | |||||||||||||| |||  ||| ||||||    
T  24134618 tagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggcccctgcacatattgtgcattatcccttaccaaatgagctaagct 24134717  T
Q  337 caggggga 344  Q
    || |||||    
T  24134718 catgggga 24134725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 220 - 345
Target Start/End: Complemental strand, 29332403 - 29332279
Alignment:
Q  220 gtcaagtagcat-gcggatagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatccct 318  Q
    |||||||||| | |||| |||||||||||||||||||| ||||||||||| ||||   || ||| ||| ||||  | |||  || |||| ||||||||||    
T  29332403 gtcaagtagcctagcggctagagaaattcaccttaaaggtgaataagtggggtgtccggggttcaaaccccggcccatgc--attatatacattatccct 29332306  T
Q  319 tatcaagagagttaagctcagggggac 345  Q
    ||||||| |||||||||||| ||||||    
T  29332305 tatcaagtgagttaagctcatggggac 29332279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 237 - 338
Target Start/End: Original strand, 14262715 - 14262816
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    |||||||||||||||||||| ||||||||| | ||||   || ||||||| |||   |||||||||| | ||||||||||||||||||  ||||||| ||    
T  14262715 tagagaaattcaccttaaagatgaataagtagggtgtccggggttcgaaccccgacccctgcatatattgtgcattatcccttatcaaatgagttaatct 14262814  T
Q  337 ca 338  Q
    ||    
T  14262815 ca 14262816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 237 - 345
Target Start/End: Complemental strand, 50011608 - 50011500
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    |||||||||||||||||||| |||||||||||  ||| | || ||||||| || |  |||||| ||| | |||||||||||||| |||  ||| ||||||    
T  50011608 tagagaaattcaccttaaagatgaataagtgggatgtctggggttcgaaccccagcccctgcacatattgtgcattatcccttaccaaatgagctaagct 50011509  T
Q  337 cagggggac 345  Q
    || ||||||    
T  50011508 catggggac 50011500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 237 - 320
Target Start/End: Original strand, 48497207 - 48497290
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatccctta 320  Q
    |||||||||| ||||||||| ||||||| ||||||||   || ||||||||||||  |||||| ||| | ||||||||||||||    
T  48497207 tagagaaatttaccttaaagatgaataaatggagtgtccgggattcgaactccggcccctgcacatattgtgcattatccctta 48497290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 242 - 320
Target Start/End: Complemental strand, 41160939 - 41160861
Alignment:
Q  242 aaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatccctta 320  Q
    ||||||||||||||| ||||  |||||||||||  || |||||||||||  ||||||||| |  |||||||||||||||    
T  41160939 aaattcaccttaaagatgaaatagtggagtgttcgggattcgaactccgactcctgcatacataatgcattatccctta 41160861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 239 - 320
Target Start/End: Complemental strand, 8893959 - 8893878
Alignment:
Q  239 gagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatccctta 320  Q
    |||||||||||||||||| ||||||||||| |||||| || ||||||| |||   |||| | ||| | ||||||||||||||    
T  8893959 gagaaattcaccttaaagatgaataagtggggtgtttggggttcgaaccccgacccctgtacatattgtgcattatccctta 8893878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 237 - 286
Target Start/End: Original strand, 10123047 - 10123096
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaac 286  Q
    |||||||||||||||||||| ||||||||||| |||||| || |||||||    
T  10123047 tagagaaattcaccttaaagatgaataagtggggtgtttggggttcgaac 10123096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 298 - 338
Target Start/End: Original strand, 1862894 - 1862934
Alignment:
Q  298 catataatatgcattatcccttatcaagagagttaagctca 338  Q
    |||||||||||||||||||||||||||| ||| ||||||||    
T  1862894 catataatatgcattatcccttatcaagtgagctaagctca 1862934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 238 - 338
Target Start/End: Original strand, 40209910 - 40210010
Alignment:
Q  238 agagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagctc 337  Q
    ||||||||||||||||||| |||| || ||  |||||| || |||||||| ||   ||| ||||||||||||||| ||||||| |||| ||  |||||||    
T  40209910 agagaaattcaccttaaaggtgaaaaaatgaggtgtttggggttcgaacttcgacccctacatataatatgcattgtcccttaccaagtgatctaagctc 40210009  T
Q  338 a 338  Q
    |    
T  40210010 a 40210010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 263 - 318
Target Start/End: Complemental strand, 15775817 - 15775762
Alignment:
Q  263 aagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatccct 318  Q
    |||| |||||| | || |||||||||||| |||||||||||||||||| |||||||    
T  15775817 aagttgagtgtctggggttcgaactccggctcctgcatataatatgcaatatccct 15775762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 294 - 345
Target Start/End: Original strand, 24253694 - 24253745
Alignment:
Q  294 cctgcatataatatgcattatcccttatcaagagagttaagctcagggggac 345  Q
    |||||||| | ||||||||||||||||||||| ||| |||||||| ||||||    
T  24253694 cctgcataaattatgcattatcccttatcaagtgagctaagctcatggggac 24253745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 237 - 320
Target Start/End: Original strand, 25031491 - 25031574
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatccctta 320  Q
    |||||||||||||||||||| ||||||||||| ||||   |  ||||||| ||||  |||||| ||| ||||||||||| ||||    
T  25031491 tagagaaattcaccttaaagatgaataagtggggtgtccggaattcgaaccccggcccctgcacatattatgcattatctctta 25031574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 237 - 347
Target Start/End: Original strand, 3347697 - 3347807
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    |||||||||||||||||||| ||||||||||| ||||   || ||||||| |||  ||||| | ||| | | |||||||| ||| |||  | ||||||||    
T  3347697 tagagaaattcaccttaaagatgaataagtggggtgtacggggttcgaaccccgactcctgaacatattgtacattatccattaccaaatgtgttaagct 3347796  T
Q  337 cagggggactg 347  Q
    || ||||||||    
T  3347797 cacggggactg 3347807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 280 - 318
Target Start/End: Original strand, 4482607 - 4482645
Alignment:
Q  280 ttcgaactccggttcctgcatataatatgcattatccct 318  Q
    |||||||||||| |||||||||||||||||| |||||||    
T  4482607 ttcgaactccggctcctgcatataatatgcaatatccct 4482645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 280 - 338
Target Start/End: Complemental strand, 12662749 - 12662691
Alignment:
Q  280 ttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagctca 338  Q
    ||||||||||||  ||||||||||||||||| |||||||||| ||  ||| ||||||||    
T  12662749 ttcgaactccggcccctgcatataatatgcaatatcccttattaactgagctaagctca 12662691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 240 - 346
Target Start/End: Original strand, 34702310 - 34702416
Alignment:
Q  240 agaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagctcag 339  Q
    ||||||||| ||||||| ||||||||||  ||||   || ||||||| ||||  |||||| ||| | |||||||||||||| |||  ||| ||||||||     
T  34702310 agaaattcatcttaaagatgaataagtgaggtgtccggggttcgaaccccggcccctgcacatattgtgcattatcccttaccaaatgagctaagctcat 34702409  T
Q  340 ggggact 346  Q
    |||||||    
T  34702410 ggggact 34702416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 344
Target Start/End: Original strand, 2352557 - 2352637
Alignment:
Q  263 aagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagctcaggggga 344  Q
    ||||||||||||  || ||||||| |||| |||||||||||||||||| |||| | ||||||  ||| |||||||| |||||    
T  2352557 aagtggagtgttcgggattcgaaccccggctcctgcatataatatgcaatatctc-tatcaactgagctaagctcacgggga 2352637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 338
Target Start/End: Original strand, 23368726 - 23368827
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    |||| ||||||||||| ||  ||||||||||| ||||   || |||||||  |||| |||||| | ||| ||||||||||||||||||  ||| ||||||    
T  23368726 tagataaattcacctttaatgtgaataagtggggtgtccggggttcgaacatcggtccctgcacaaaatgtgcattatcccttatcaaatgagctaagct 23368825  T
Q  337 ca 338  Q
    ||    
T  23368826 ca 23368827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 240 - 345
Target Start/End: Complemental strand, 35309822 - 35309718
Alignment:
Q  240 agaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagctcag 339  Q
    ||||||||||||||||| ||||||||||| |||||  || ||||| ||||    |||||||| || ||| ||||||||||| |||  ||| ||||||||     
T  35309822 agaaattcaccttaaagatgaataagtggggtgttcggggttcgacctccaacccctgcatacaa-atgtattatcccttaccaaatgagctaagctcat 35309724  T
Q  340 ggggac 345  Q
    ||||||    
T  35309723 ggggac 35309718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 338
Target Start/End: Original strand, 43109232 - 43109333
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    |||||||||||||||||||| ||||||| ||  ||||   || ||||||| ||||  |||||| ||| | |||||||||||||| |||  ||| ||||||    
T  43109232 tagagaaattcaccttaaagatgaataaatgaggtgtccggggttcgaaccccggcccctgcacatattttgcattatcccttaccaaatgagctaagct 43109331  T
Q  337 ca 338  Q
    ||    
T  43109332 ca 43109333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 232 - 347
Target Start/End: Complemental strand, 15025262 - 15025147
Alignment:
Q  232 gcggatagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagtt 331  Q
    |||| |||||||||||||||||||| ||||||||||| |||||  || || |||| ||||  |||| ||| |||||||||||||||||| |||  |||||    
T  15025262 gcgggtagagaaattcaccttaaaggtgaataagtggggtgttcggggtttgaaccccggcccctgtataaaatatgcattatcccttaccaaatgagtt 15025163  T
Q  332 aagctcagggggactg 347  Q
    ||||||| ||||||||    
T  15025162 aagctcatggggactg 15025147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 220 - 345
Target Start/End: Complemental strand, 5228189 - 5228064
Alignment:
Q  220 gtcaagtagcat-gcggatagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatccct 318  Q
    |||||||||| | |||| |||||||||||||||||||| ||||||||||| ||||   || ||||||| ||||  |||||||| || ||||||||||| |    
T  5228189 gtcaagtagcctagcggctagagaaattcaccttaaaggtgaataagtggggtgtccaggattcgaaccccggcccctgcata-aaaatgcattatcctt 5228091  T
Q  319 tatcaagagagttaagctcagggggac 345  Q
    ||||||| ||| |||||||| ||||||    
T  5228090 tatcaagtgagctaagctcatggggac 5228064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 240 - 338
Target Start/End: Complemental strand, 23602372 - 23602274
Alignment:
Q  240 agaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagctca 338  Q
    ||||||||||||||||| ||||||||||  ||||   || |||||||||||||  |||||||||||||||||||| |||||||||  ||| ||||||||    
T  23602372 agaaattcaccttaaaggtgaataagtgaggtgtccggggttcgaactccggtcactgcatataatatgcattattccttatcaaatgagctaagctca 23602274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 232 - 338
Target Start/End: Complemental strand, 46243397 - 46243291
Alignment:
Q  232 gcggatagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagtt 331  Q
    |||| |||||||||||||||||||| ||||||||||| |||||  |  ||||||||||| | |||  |||||||||||||||||||||| |||  ||| |    
T  46243397 gcggttagagaaattcaccttaaaggtgaataagtggggtgttcggagttcgaactccgatccctatatataatatgcattatcccttaccaaatgagct 46243298  T
Q  332 aagctca 338  Q
    |||||||    
T  46243297 aagctca 46243291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 238 - 345
Target Start/End: Original strand, 25775608 - 25775715
Alignment:
Q  238 agagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagctc 337  Q
    ||||||||||||||||||| ||||||||||| |||||| |  |||||||  |||||| |||||||| ||| |||||||| ||| |||| ||| ||| |||    
T  25775608 agagaaattcaccttaaagatgaataagtggggtgtttggagttcgaacctcggttcttgcatatattatacattatcctttaccaagtgagctaaactc 25775707  T
Q  338 agggggac 345  Q
    | ||||||    
T  25775708 atggggac 25775715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 240 - 338
Target Start/End: Complemental strand, 29357898 - 29357801
Alignment:
Q  240 agaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagctca 338  Q
    ||||||||||||||||| ||||  ||||||||||   || ||||||||||||  ||||||||||  |||||||||||||||||||| ||| ||||||||    
T  29357898 agaaattcaccttaaaggtgaaatagtggagtgtccagggttcgaactccggc-cctgcatatataatgcattatcccttatcaagtgagctaagctca 29357801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 237 - 345
Target Start/End: Complemental strand, 40273922 - 40273814
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    |||||||||||||||||||| ||||||||||| ||||   || ||||||| ||||  |||||| ||| | |||||||||||||| |||  ||| ||||||    
T  40273922 tagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggcccctgcacatattgtgcattatcccttaccaaatgagctaagct 40273823  T
Q  337 cagggggac 345  Q
    || ||||||    
T  40273822 catggggac 40273814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 220 - 338
Target Start/End: Original strand, 26606085 - 26606204
Alignment:
Q  220 gtcaagtagc-atgcggatagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatccct 318  Q
    |||||||||| | |||| |||||||||||||||||||| ||||||||||||||||   || ||| ||| ||||  ||| ||||| || |||||||| |||    
T  26606085 gtcaagtagccaagcggctagagaaattcaccttaaaggtgaataagtggagtgtccagggttcaaaccccggcccctacatatgatttgcattattcct 26606184  T
Q  319 tatcaagagagttaagctca 338  Q
    ||||||| ||  ||||||||    
T  26606185 tatcaagtgaactaagctca 26606204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 237 - 346
Target Start/End: Original strand, 48433704 - 48433813
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    |||||||||||||||||||| ||||||||||| ||||   || || |||| ||||  |||||| ||| | |||||||||||||| |||  ||| ||||||    
T  48433704 tagagaaattcaccttaaagatgaataagtggggtgtccggggtttgaaccccggcccctgcacatattgtgcattatcccttaccaaatgagctaagct 48433803  T
Q  337 cagggggact 346  Q
    || |||||||    
T  48433804 catggggact 48433813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 237 - 345
Target Start/End: Complemental strand, 24030086 - 24029978
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    |||||||||||||||||||| ||||||| ||| |||| | || ||||||| ||||  ||| || ||| | ||||||||||||||||||  ||| ||| ||    
T  24030086 tagagaaattcaccttaaagatgaataaatggggtgtctggggttcgaaccccggcccctacacatattgtgcattatcccttatcaaatgagctaaact 24029987  T
Q  337 cagggggac 345  Q
    || ||||||    
T  24029986 catggggac 24029978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 237 - 320
Target Start/End: Original strand, 10091451 - 10091533
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatccctta 320  Q
    |||||||||||||||||||| ||||||||| | |||| | || ||||||| ||||  |||||||| || |||||||||||||||    
T  10091451 tagagaaattcaccttaaaggtgaataagttgggtgtctagggttcgaaccccggcccctgcatacaa-atgcattatccctta 10091533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 238 - 333
Target Start/End: Original strand, 25770037 - 25770132
Alignment:
Q  238 agagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaa 333  Q
    |||||||||||| |||||| ||||||||||| |||||| |  |||||||  |||||| | |||||| ||| |||||||| ||| |||| |||||||    
T  25770037 agagaaattcactttaaagatgaataagtggggtgtttggagttcgaacctcggttcttacatatattatacattatcctttaccaagtgagttaa 25770132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 280 - 346
Target Start/End: Original strand, 46570008 - 46570074
Alignment:
Q  280 ttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagctcagggggact 346  Q
    ||||||| ||||  |||||||| | ||||||||||||||||||||| ||| |||||||| |||||||    
T  46570008 ttcgaaccccggcccctgcataaactatgcattatcccttatcaagtgagctaagctcacggggact 46570074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 240 - 345
Target Start/End: Complemental strand, 37665842 - 37665737
Alignment:
Q  240 agaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagctcag 339  Q
    |||||||||||||||||  |||||||||| ||||   || || |||| ||||  |||||||||||||||  |||||| ||| |||  ||||||||||||     
T  37665842 agaaattcaccttaaaggcgaataagtggggtgtccggggtttgaaccccggcccctgcatataatatgttttatcctttaccaaatgagttaagctcac 37665743  T
Q  340 ggggac 345  Q
    ||||||    
T  37665742 ggggac 37665737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 238 - 338
Target Start/End: Original strand, 9668811 - 9668909
Alignment:
Q  238 agagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagctc 337  Q
    ||||||||||||||||| || |||||| ||  |||||| || ||||||| |  || |||||||| |||||||||||||||||| |||| ||| |||||||    
T  9668811 agagaaattcaccttaaggt-gaataaatgaggtgtttggggttcgaaccctagtccctgcata-aatatgcattatcccttaccaagtgagctaagctc 9668908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 237 - 320
Target Start/End: Original strand, 28914871 - 28914955
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcc-tgcatataatatgcattatccctta 320  Q
    |||||||||||||||| ||  ||||||||||| ||||   || ||||||| ||||  || |||||||||||||||||||||||||    
T  28914871 tagagaaattcacctttaaagtgaataagtggggtgtccggggttcgaaccccggccccctgcatataatatgcattatccctta 28914955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 48619897 - 48619861
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgt 273  Q
    |||||||||||||||||||| ||||||||||||||||    
T  48619897 tagagaaattcaccttaaagatgaataagtggagtgt 48619861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 237 - 320
Target Start/End: Original strand, 4956086 - 4956169
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatccctta 320  Q
    |||||||||||||||||||| ||||||||||| ||||   || ||||||| |||   |||||| ||| | ||||||||||||||    
T  4956086 tagagaaattcaccttaaagatgaataagtggggtgtccagggttcgaaccccgacccctgcacatattgtgcattatccctta 4956169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 237 - 320
Target Start/End: Complemental strand, 12166183 - 12166100
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatccctta 320  Q
    |||||||||||||||||||| ||||||||||| |||| | || ||||||| || |  |||||| | | | ||||||||||||||    
T  12166183 tagagaaattcaccttaaagatgaataagtggggtgtctggggttcgaaccccagcccctgcacaaattgtgcattatccctta 12166100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 263 - 318
Target Start/End: Original strand, 12640581 - 12640636
Alignment:
Q  263 aagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatccct 318  Q
    ||||||||||| | || ||||||| |||| |||||||||||||||||| |||||||    
T  12640581 aagtggagtgtctggggttcgaaccccggctcctgcatataatatgcaatatccct 12640636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 263 - 318
Target Start/End: Original strand, 46534740 - 46534795
Alignment:
Q  263 aagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatccct 318  Q
    ||||||||||||  || ||||||||| || |||||||||||||||||| |||||||    
T  46534740 aagtggagtgttcggggttcgaactcaggctcctgcatataatatgcaatatccct 46534795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 344
Target Start/End: Complemental strand, 3766889 - 3766809
Alignment:
Q  263 aagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagctcaggggga 344  Q
    |||||||||||   || ||||||| |||| |||||||||||||||||| |||||| || |||  |||||||||||| |||||    
T  3766889 aagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccc-taccaactgagttaagctcacgggga 3766809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 338
Target Start/End: Complemental strand, 31793569 - 31793468
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    ||||||||| |||||||||| ||||||||||| ||||   || ||||||| |||   |||||| ||| | |||||||||||||| |||  ||| ||||||    
T  31793569 tagagaaatccaccttaaagatgaataagtggggtgtccggggttcgaaccccgacccctgcacatattgtgcattatcccttaacaaatgagctaagct 31793470  T
Q  337 ca 338  Q
    ||    
T  31793469 ca 31793468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 2e-18; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 232 - 344
Target Start/End: Complemental strand, 38690772 - 38690660
Alignment:
Q  232 gcggatagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagtt 331  Q
    |||| ||||||||||||||||||||  |||||||||| ||||   || ||||||| |||   ||||||||||||||||||||||||||| |||| ||| |    
T  38690772 gcggctagagaaattcaccttaaaggagaataagtggggtgtccggggttcgaaccccgacccctgcatataatatgcattatcccttaccaagtgagct 38690673  T
Q  332 aagctcaggggga 344  Q
    ||||||| |||||    
T  38690672 aagctcatgggga 38690660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 237 - 337
Target Start/End: Original strand, 11491213 - 11491313
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    |||||||||||||||||||| ||||||||||| ||||   || ||||||||||||  |||||| | | ||||||||||||||| ||||  ||| ||||||    
T  11491213 tagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaactccggcccctgcacaaattatgcattatcccttgtcaaatgagctaagct 11491312  T
Q  337 c 337  Q
    |    
T  11491313 c 11491313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 240 - 324
Target Start/End: Original strand, 45847923 - 45848007
Alignment:
Q  240 agaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaa 324  Q
    ||||||||||||||||| ||||||||||| ||||   || ||||||| ||| | |||||| ||| ||||||||||||||||||||    
T  45847923 agaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccgatccctgcacatattatgcattatcccttatcaa 45848007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 220 - 338
Target Start/End: Original strand, 49811384 - 49811502
Alignment:
Q  220 gtcaagtagcat-gcggatagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatccct 318  Q
    |||||||||| | |||| |||||||||||| ||||||| ||||||||||| || || ||| ||||||| || |  ||| ||||||||||||||||| |||    
T  49811384 gtcaagtagcctagcggctagagaaattcatcttaaaggtgaataagtggggtattatgggttcgaac-cctgcccctacatataatatgcattattcct 49811482  T
Q  319 tatcaagagagttaagctca 338  Q
    || |||| ||| ||||||||    
T  49811483 taccaagtgagataagctca 49811502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 237 - 338
Target Start/End: Complemental strand, 16556552 - 16556451
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    |||||||||||||||||||| ||||||||||| |||||  || ||||||| |||   |||||| ||| | |||||||||||||| |||  ||| ||||||    
T  16556552 tagagaaattcaccttaaagatgaataagtggggtgttcggggttcgaaccccgacccctgcacatattgtgcattatcccttaccaaatgagctaagct 16556453  T
Q  337 ca 338  Q
    ||    
T  16556452 ca 16556451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 237 - 346
Target Start/End: Complemental strand, 46283223 - 46283114
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    |||||||||||||||||||| ||||||||||| ||||   || ||||||| ||||   ||||| ||| | |||||||||||||| |||  ||| ||||||    
T  46283223 tagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggccgctgcacatattgtgcattatcccttaccaaatgaggtaagct 46283124  T
Q  337 cagggggact 346  Q
    || |||||||    
T  46283123 catggggact 46283114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 232 - 316
Target Start/End: Complemental strand, 22525494 - 22525411
Alignment:
Q  232 gcggatagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcc 316  Q
    |||| |||||||||||| ||||||| ||||||||||| ||||   || ||||||| |||| | ||||||||||||||||||||||    
T  22525494 gcggttagagaaattcatcttaaaggtgaataagtggggtgtccgggattcgaac-ccggcttctgcatataatatgcattatcc 22525411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 237 - 319
Target Start/End: Complemental strand, 56555649 - 56555568
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatccctt 319  Q
    |||||||||||||||||||| ||||||||||| |||||   | ||||||| |||   ||||||||||| ||||||||||||||    
T  56555649 tagagaaattcaccttaaaggtgaataagtggggtgttcgaggttcgaaccccgacccctgcatataa-atgcattatccctt 56555568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 237 - 338
Target Start/End: Complemental strand, 29430598 - 29430497
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    |||| ||||||||||||||| ||||||||| | ||||   || ||||||| ||| |  |||||||||||||||||| ||||||| ||||  || ||||||    
T  29430598 tagataaattcaccttaaagatgaataagtagggtgtccggggttcgaaccccgatcactgcatataatatgcattgtcccttaccaagtaagctaagct 29430499  T
Q  337 ca 338  Q
    ||    
T  29430498 ca 29430497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 238 - 338
Target Start/End: Original strand, 13539835 - 13539933
Alignment:
Q  238 agagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagctc 337  Q
    ||||||||||||||||| || |||||| ||  |||||| || ||||||| |  || |||||||| |||||||||||||||||| |||| ||| |||||||    
T  13539835 agagaaattcaccttaaggt-gaataaatgaggtgtttggggttcgaaccctagtccctgcata-aatatgcattatcccttaccaagtgagctaagctc 13539932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 237 - 317
Target Start/End: Original strand, 26885394 - 26885474
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatccc 317  Q
    ||||||||| |||||||||| | ||||||||||||||   || ||||||| ||||  || ||||||||| |||||||||||    
T  26885394 tagagaaatccaccttaaagataaataagtggagtgtccggggttcgaaccccggccccagcatataatgtgcattatccc 26885474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 237 - 345
Target Start/End: Complemental strand, 37574373 - 37574266
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    |||||||||||||||||||| ||||||||||| |||    || || |||| ||||  |||||||| || ||||||||||||||| |||  ||| ||||||    
T  37574373 tagagaaattcaccttaaaggtgaataagtggggtgcccggggtttgaaccccggcccctgcatacaa-atgcattatcccttaccaaatgagctaagct 37574275  T
Q  337 cagggggac 345  Q
    || ||||||    
T  37574274 catggggac 37574266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 237 - 344
Target Start/End: Original strand, 40406954 - 40407062
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaa-ctccggttcctgcatataatatgcattatcccttatcaagagagttaagc 335  Q
    |||||||||||||||||||| ||||||||||| ||||   || |||||| | ||||  |||||| ||| | |||||||||||||| |||  ||| |||||    
T  40406954 tagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaacccccggcccctgcacatattgtgcattatcccttaccaaatgagctaagc 40407053  T
Q  336 tcaggggga 344  Q
    ||| |||||    
T  40407054 tcatgggga 40407062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 510 - 556
Target Start/End: Complemental strand, 8089265 - 8089219
Alignment:
Q  510 ttcgaacttcggacaccacatgtcttcacatttaatatgtgtgaact 556  Q
    ||||||||||||||||  ||| ||| |||||||||||||||||||||    
T  8089265 ttcgaacttcggacactccatttctccacatttaatatgtgtgaact 8089219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 240 - 338
Target Start/End: Complemental strand, 24570308 - 24570210
Alignment:
Q  240 agaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagctca 338  Q
    ||||||||||||||||||||||||||| | |||||  || ||||||| ||    ||| |||||| | |||||||||||||| ||| |  ||||||||||    
T  24570308 agaaattcaccttaaagttgaataagtagggtgttcggggttcgaaccccaacccctacatatattgtgcattatcccttaccaaaaatgttaagctca 24570210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 240 - 338
Target Start/End: Original strand, 43362165 - 43362263
Alignment:
Q  240 agaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagctca 338  Q
    ||||||||||||||||| ||||||||||| ||||   || ||||||| |||   |||| ||||| | |||||||||||||| |||  ||| ||||||||    
T  43362165 agaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccgacccctgaatatattgtgcattatcccttagcaaatgagctaagctca 43362263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 237 - 347
Target Start/End: Complemental strand, 50815808 - 50815698
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    |||||||||||||||| ||| |||||| |||| ||||   || ||||||| ||||  |||||| | | | |||||||||| |||||||  ||| ||||||    
T  50815808 tagagaaattcacctttaagatgaatatgtggggtgtccggggttcgaaccccggcccctgcacaaattgtgcattatcctttatcaaatgagctaagct 50815709  T
Q  337 cagggggactg 347  Q
    || ||||||||    
T  50815708 catggggactg 50815698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 286
Target Start/End: Original strand, 2832065 - 2832114
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaac 286  Q
    ||||| |||||||||||||| ||||||||||| |||||| || |||||||    
T  2832065 tagaggaattcaccttaaagatgaataagtggggtgtttggggttcgaac 2832114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 261 - 310
Target Start/End: Complemental strand, 45741555 - 45741506
Alignment:
Q  261 ataagtggagtgttttggcttcgaactccggttcctgcatataatatgca 310  Q
    ||||||||||||| | || |||||||||||| |||||||||||| |||||    
T  45741555 ataagtggagtgtctggggttcgaactccggctcctgcatataacatgca 45741506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 9e-17; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 232 - 345
Target Start/End: Complemental strand, 49429566 - 49429454
Alignment:
Q  232 gcggatagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagtt 331  Q
    |||| |||||||||||||||||||| ||||||||||| ||||   || ||||||| | ||| |||||||| || ||||||||||||||| |||  |||||    
T  49429566 gcggctagagaaattcaccttaaaggtgaataagtggggtgtccggggttcgaaccctggtccctgcatacaa-atgcattatcccttaccaaatgagtt 49429468  T
Q  332 aagctcagggggac 345  Q
    ||||||| ||||||    
T  49429467 aagctcatggggac 49429454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 237 - 345
Target Start/End: Complemental strand, 50381815 - 50381707
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    |||||||||||||||||||| ||||||||||| ||||   || ||||||| |||   |||||||||| | |||||||||||||| |||  ||||||||||    
T  50381815 tagagaaattcaccttaaagatgaataagtggggtgtccgggattcgaaccccgacccctgcatatattgtgcattatcccttaccaaatgagttaagct 50381716  T
Q  337 cagggggac 345  Q
    || ||||||    
T  50381715 catggggac 50381707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 220 - 345
Target Start/End: Complemental strand, 166907 - 166781
Alignment:
Q  220 gtcaagtagcat-gcggatagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatccct 318  Q
    |||||||||| | |||| || |||||||||| |||||| ||||||||||  |||| | || ||||||| ||||  |||||||| | ||||||||||||||    
T  166907 gtcaagtagcctagcggctaaagaaattcactttaaaggtgaataagtgaggtgtctggggttcgaaccccggcccctgcataaattatgcattatccct 166808  T
Q  319 tatcaagagagttaagctcagggggac 345  Q
    || |||| ||| |||||||| ||||||    
T  166807 taccaagtgagctaagctcacggggac 166781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 325
Target Start/End: Original strand, 37756408 - 37756495
Alignment:
Q  238 agagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaag 325  Q
    ||||||| |||| |||||| ||||||||||| |||||| || ||||||| || |  |||||||| | |||||||||||||||||||||    
T  37756408 agagaaactcacgttaaaggtgaataagtggggtgtttggggttcgaaccccagcccctgcataaattatgcattatcccttatcaag 37756495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 232 - 347
Target Start/End: Complemental strand, 45431733 - 45431618
Alignment:
Q  232 gcggatagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagtt 331  Q
    |||| ||| |||||||||||||||| ||||||||||| ||||   || ||||||| | |   |||||||| |||| ||||||||||||| |||| ||| |    
T  45431733 gcggctagggaaattcaccttaaaggtgaataagtggggtgtccggggttcgaaccctgacccctgcataaaatacgcattatcccttaccaagtgagct 45431634  T
Q  332 aagctcagggggactg 347  Q
    ||||||| ||||||||    
T  45431633 aagctcatggggactg 45431618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 220 - 320
Target Start/End: Original strand, 1102672 - 1102773
Alignment:
Q  220 gtcaagtagcat-gcggatagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatccct 318  Q
    |||||||||| | |||| |||||||||||||||||||| ||||||||||| ||||    | |||||||||||   |||||||| | ||||||||||||||    
T  1102672 gtcaagtagcctagcggctagagaaattcaccttaaaggtgaataagtggggtgtccatggttcgaactccgtcccctgcataaattatgcattatccct 1102771  T
Q  319 ta 320  Q
    ||    
T  1102772 ta 1102773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 220 - 344
Target Start/End: Complemental strand, 27394626 - 27394502
Alignment:
Q  220 gtcaagtagcat-gcggatagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatccct 318  Q
    |||||||||| | |||| |||||||||||||||||||| ||||||||||| ||||   || ||| ||| || |  ||||||||||| |||||||||||||    
T  27394626 gtcaagtagcctagcggctagagaaattcaccttaaaggtgaataagtggggtgtccggggttcaaaccccagcccctgcatataa-atgcattatccct 27394528  T
Q  319 tatcaagagagttaagctcaggggga 344  Q
    || |||| ||| | |||||| |||||    
T  27394527 taccaagtgagcttagctcacgggga 27394502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 237 - 338
Target Start/End: Original strand, 50676861 - 50676962
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    |||||||||||||||||||| ||||||||||| |||||  || ||||||| ||    ||| ||||||||||| ||| ||||||| |||| ||||||| ||    
T  50676861 tagagaaattcaccttaaaggtgaataagtggggtgttcggggttcgaaccccaacccctacatataatatgtattgtcccttaccaagtgagttaaact 50676960  T
Q  337 ca 338  Q
    ||    
T  50676961 ca 50676962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 237 - 345
Target Start/End: Original strand, 33528199 - 33528307
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    |||||||||||||||||||| ||||||||||| |||| | || ||||||| || |  |||||| | | | |||||||||||||| |||  ||| ||||||    
T  33528199 tagagaaattcaccttaaagatgaataagtggggtgtctggggttcgaaccccagcccctgcacaaattgtgcattatcccttaccaaatgagctaagct 33528298  T
Q  337 cagggggac 345  Q
    || ||||||    
T  33528299 catggggac 33528307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 235 - 344
Target Start/End: Complemental strand, 29226429 - 29226320
Alignment:
Q  235 gatagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaag 334  Q
    |||||||||||||||||||||| ||||||||||| ||||   || ||||||| ||||  |||||| ||| | ||  |||||||||| |||  ||| ||||    
T  29226429 gatagagaaattcaccttaaagatgaataagtggggtgtacggggttcgaaccccggcccctgcacatattgtgtgttatcccttaccaaatgagctaag 29226330  T
Q  335 ctcaggggga 344  Q
    |||| |||||    
T  29226329 ctcatgggga 29226320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 263 - 318
Target Start/End: Original strand, 6919955 - 6920010
Alignment:
Q  263 aagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatccct 318  Q
    ||||||||||||  || ||||||| |||| |||||||||||||||||| |||||||    
T  6919955 aagtggagtgttcggggttcgaaccccggctcctgcatataatatgcaatatccct 6920010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 242 - 336
Target Start/End: Original strand, 5558085 - 5558179
Alignment:
Q  242 aaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    |||||||| || ||| ||||||||||||  ||||  | ||| ||||||| | ||  ||| ||||||||||||||| |||||||| ||||||||||    
T  5558085 aaattcactttgaaggtgaataagtggaaagtttgaggttcaaactccgatcccaccatgtaatatgcattatcctttatcaagtgagttaagct 5558179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 346
Target Start/End: Complemental strand, 2259257 - 2259149
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    |||| ||||| ||||||||| ||||||||| | |||| | || || |||||||||  |||||| ||| | |||||||||||||| |||  ||| ||||||    
T  2259257 tagataaatttaccttaaagatgaataagtag-gtgtctggggtttgaactccggcccctgcacatattgtgcattatcccttaccaaatgagctaagct 2259159  T
Q  337 cagggggact 346  Q
    || |||||||    
T  2259158 catggggact 2259149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 240 - 273
Target Start/End: Complemental strand, 9738454 - 9738421
Alignment:
Q  240 agaaattcaccttaaagttgaataagtggagtgt 273  Q
    ||||||||||||||||| ||||||||||||||||    
T  9738454 agaaattcaccttaaagatgaataagtggagtgt 9738421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 346
Target Start/End: Complemental strand, 32421449 - 32421340
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    |||| ||||||| ||||||| ||||||||||| | |||   | ||||||| |||   |||||||||| |||||||||||||||| ||   ||| ||||||    
T  32421449 tagaaaaattcatcttaaagatgaataagtggggagttcgaggttcgaaccccgacccctgcatatattatgcattatcccttaccagatgagctaagct 32421350  T
Q  337 cagggggact 346  Q
    || |||||||    
T  32421349 catggggact 32421340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 338
Target Start/End: Complemental strand, 39739375 - 39739274
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    |||||||||||||||||||| ||||||||||  ||||   || ||||||| ||  | |||||| ||| | |||||||||||||| |||  ||| ||||||    
T  39739375 tagagaaattcaccttaaagatgaataagtgaggtgtccggggttcgaaccccaatccctgcacatattgtgcattatcccttaccaaatgagctaagct 39739276  T
Q  337 ca 338  Q
    ||    
T  39739275 ca 39739274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 346
Target Start/End: Complemental strand, 46798683 - 46798574
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    |||||||||  ||||||||| ||||||||||| ||||   || ||||||  ||||  |||||| ||| | |||||||||||| | |||  ||||||||||    
T  46798683 tagagaaatctaccttaaagatgaataagtggggtgtccagggttcgaatcccggcccctgcacatattgtgcattatccctcaccaaatgagttaagct 46798584  T
Q  337 cagggggact 346  Q
    || |||||||    
T  46798583 catggggact 46798574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 232 - 345
Target Start/End: Complemental strand, 50271835 - 50271723
Alignment:
Q  232 gcggatagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagtt 331  Q
    |||| |||||||||||||||||||| |||||||||||  |||   || |||||||  |||  |||||||| || |||||||||| |||| |||  ||| |    
T  50271835 gcggttagagaaattcaccttaaaggtgaataagtgggatgtacggggttcgaaccacggcccctgcatacaa-atgcattatctcttaccaaatgagct 50271737  T
Q  332 aagctcagggggac 345  Q
    ||||||| ||||||    
T  50271736 aagctcatggggac 50271723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 344
Target Start/End: Original strand, 52974045 - 52974125
Alignment:
Q  263 aagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagctcaggggga 344  Q
    |||||||||||   || ||||||| |||| |||||||||||||||||| |||||| || |||  |||||||||||| |||||    
T  52974045 aagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccc-taccaactgagttaagctcacgggga 52974125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 9e-17; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 236 - 345
Target Start/End: Complemental strand, 20375695 - 20375586
Alignment:
Q  236 atagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagc 335  Q
    ||||||||||||||||||||| ||||||||||| |||| |  | ||||||| ||||  |||||||| |||| ||| ||||||||| |||| ||| |||||    
T  20375695 atagagaaattcaccttaaagatgaataagtggcgtgtctgaggttcgaaccccggaccctgcataaaataggcaatatcccttaccaagtgagctaagc 20375596  T
Q  336 tcagggggac 345  Q
    ||| ||||||    
T  20375595 tcacggggac 20375586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 240 - 336
Target Start/End: Complemental strand, 6866606 - 6866510
Alignment:
Q  240 agaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    ||||||||||||||||| | ||||||||  ||||   || |||||||||||||||||||| ||| | |||||||||||||| |||  ||||||||||    
T  6866606 agaaattcaccttaaagataaataagtgaggtgtccgggattcgaactccggttcctgcacatattgtgcattatcccttaccaaatgagttaagct 6866510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 235 - 345
Target Start/End: Complemental strand, 20435884 - 20435774
Alignment:
Q  235 gatagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaag 334  Q
    |||||||||||||||||||||| |||||||||||  |||    | ||||||| ||||  | |||||| |||||||| ||||||||| |||| ||| ||||    
T  20435884 gatagagaaattcaccttaaagatgaataagtgggatgtccgaggttcgaaccccgggccttgcataaaatatgcaatatcccttaccaagtgagctaag 20435785  T
Q  335 ctcagggggac 345  Q
    |||| ||||||    
T  20435784 ctcacggggac 20435774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 237 - 322
Target Start/End: Original strand, 33613599 - 33613684
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatc 322  Q
    |||||||||||| ||||||| ||||||||||| ||||   || |||||||||||   |  ||||||||||||||||||||||||||    
T  33613599 tagagaaattcaacttaaaggtgaataagtggggtgtccggggttcgaactccgaccctcgcatataatatgcattatcccttatc 33613684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 29090514 - 29090431
Alignment:
Q  239 gagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatca 323  Q
    |||||||||||||||||| ||||||||||  ||||   || ||||||||||||  |||| |||||| ||||||||||||||||||    
T  29090514 gagaaattcaccttaaagatgaataagtgaggtgtccggggttcgaactccggcccctgtatataa-atgcattatcccttatca 29090431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 239 - 346
Target Start/End: Complemental strand, 24202249 - 24202142
Alignment:
Q  239 gagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagctca 338  Q
    |||||||||||||||||| ||||  ||||| ||||   || ||||||| ||||  |||||||| |  ||||||||||||||| |||| ||| ||||||||    
T  24202249 gagaaattcaccttaaaggtgaaatagtggggtgtccggggttcgaaccccggcccctgcatacataatgcattatcccttaccaagtgagctaagctca 24202150  T
Q  339 gggggact 346  Q
     |||||||    
T  24202149 cggggact 24202142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 239 - 346
Target Start/End: Complemental strand, 43684377 - 43684271
Alignment:
Q  239 gagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagctca 338  Q
    |||||||||||||||||| ||||||||||| |||||  || |||||||  | |  |||||||| || ||||||||||||||| |||  ||| ||||||||    
T  43684377 gagaaattcaccttaaaggtgaataagtggggtgttcggggttcgaacctcagcccctgcatacaa-atgcattatcccttaccaaatgagctaagctca 43684279  T
Q  339 gggggact 346  Q
     |||||||    
T  43684278 tggggact 43684271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 220 - 325
Target Start/End: Complemental strand, 42541274 - 42541169
Alignment:
Q  220 gtcaagtagcat-gcggatagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatccct 318  Q
    |||||||||| | |||| |||||||||||||||||||| ||| ||||||| |||| | || ||||||| || |  |||||||| ||||| ||||||||||    
T  42541274 gtcaagtagcctagcggctagagaaattcaccttaaaggtgagtaagtggggtgtctggggttcgaaccccagcccctgcata-aatatccattatccct 42541176  T
Q  319 tatcaag 325  Q
    || ||||    
T  42541175 taccaag 42541169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 237 - 338
Target Start/End: Original strand, 42678318 - 42678419
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    |||||||||||||||||||| ||||||||||| ||||   || ||||||||||| | ||| |  ||| | |||||||||||||| ||||  |||||| ||    
T  42678318 tagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaactccgatccctacgcatattgtgcattatcccttaccaagtaagttaaact 42678417  T
Q  337 ca 338  Q
    ||    
T  42678418 ca 42678419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 237 - 345
Target Start/End: Original strand, 3330195 - 3330303
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    |||||||||||||||||||| ||||||||||| ||||   || |||||||||||    ||||| ||| | ||||||||||||||  ||  |||||||||     
T  3330195 tagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaactccgacctctgcacatattgtgcattatcccttactaaatgagttaagca 3330294  T
Q  337 cagggggac 345  Q
    || ||||||    
T  3330295 catggggac 3330303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 263 - 318
Target Start/End: Complemental strand, 18694863 - 18694808
Alignment:
Q  263 aagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatccct 318  Q
    ||||||||||| | || ||||||| || |||||||||||||||||||| |||||||    
T  18694863 aagtggagtgtctgggattcgaaccccagttcctgcatataatatgcaatatccct 18694808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 263 - 318
Target Start/End: Complemental strand, 36005520 - 36005465
Alignment:
Q  263 aagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatccct 318  Q
    ||||||||||| | || ||||||| |||| |||||||||||||||||| |||||||    
T  36005520 aagtggagtgtctggggttcgaaccccggctcctgcatataatatgcaatatccct 36005465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 237 - 320
Target Start/End: Original strand, 37886219 - 37886301
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatccctta 320  Q
    |||||||||||||||||||| ||||||||||| ||||   || ||||||| |  | |||| ||||||| |||||||||||||||    
T  37886219 tagagaaattcaccttaaaggtgaataagtggggtgtccagggttcgaaccctagctcctacatataa-atgcattatccctta 37886301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 344
Target Start/End: Complemental strand, 20296496 - 20296416
Alignment:
Q  263 aagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagctcaggggga 344  Q
    |||||||||||   || ||||||| |||| |||||||||||||||||| ||| |||||||||  ||| |||||||| |||||    
T  20296496 aagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatat-ccttatcaactgagctaagctcacgggga 20296416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 338
Target Start/End: Original strand, 27463521 - 27463621
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    ||||||||||||| |||||| ||||||||||| ||  | ||| ||||||  |||| ||||||||||| | |||||||| ||||| |||  ||| ||||||    
T  27463521 tagagaaattcactttaaagatgaataagtgg-gttatctgggttcgaatcccggctcctgcatatattgtgcattattccttaccaaatgagctaagct 27463619  T
Q  337 ca 338  Q
    ||    
T  27463620 ca 27463621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 338
Target Start/End: Complemental strand, 31605599 - 31605499
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    |||||||||||| ||||||  ||||||| |  ||||| |  | ||||||| ||| | |||||||||| ||||||||||||||||  ||| ||||||||||    
T  31605599 tagagaaattcatcttaaatgtgaataaataaagtgtctgaggttcgaaccccgttccctgcatata-tatgcattatcccttactaagtgagttaagct 31605501  T
Q  337 ca 338  Q
    ||    
T  31605500 ca 31605499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 344
Target Start/End: Original strand, 39408682 - 39408762
Alignment:
Q  263 aagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagctcaggggga 344  Q
    ||||||||||| | || ||||||| |||| || ||||||||||||||| |||||| || |||  |||||||||||| |||||    
T  39408682 aagtggagtgtctggggttcgaaccccggctcttgcatataatatgcaatatccc-taccaactgagttaagctcacgggga 39408762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 4e-16; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 238 - 338
Target Start/End: Complemental strand, 20191541 - 20191442
Alignment:
Q  238 agagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagctc 337  Q
    ||||||||| ||||||||| ||||||||||||||||   || ||||||| |||   ||||||||||| ||||||||||||||| |||| |||||||||||    
T  20191541 agagaaatttaccttaaaggtgaataagtggagtgtccggggttcgaaccccgacccctgcatataa-atgcattatcccttaccaagtgagttaagctc 20191443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 232 - 325
Target Start/End: Complemental strand, 34729577 - 34729485
Alignment:
Q  232 gcggatagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaag 325  Q
    |||| |||||||||||||||||||| ||||||||||| ||||   || ||||||| |||   ||||||||||||||||||||||||||| ||||    
T  34729577 gcggttagagaaattcaccttaaaggtgaataagtggggtgtccggg-ttcgaaccccgacccctgcatataatatgcattatcccttaccaag 34729485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 237 - 345
Target Start/End: Original strand, 38503251 - 38503359
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    |||||||||||||||||||| ||||||||||| ||||   || ||||||| ||||  |||||| ||| | |||||||||||||| |||  ||| ||||||    
T  38503251 tagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggcccctgcacatattgtgcattatcccttaccaaatgagctaagct 38503350  T
Q  337 cagggggac 345  Q
    || ||||||    
T  38503351 catggggac 38503359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 237 - 344
Target Start/End: Complemental strand, 31250248 - 31250141
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    |||||||||||||||||||| ||||||||||| ||||   || ||||||| ||||  |||||| ||| | |||||||||||||| |||  ||| ||||||    
T  31250248 tagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggcccctgcacatattgtgcattatcccttaccaaatgagctaagct 31250149  T
Q  337 caggggga 344  Q
    || |||||    
T  31250148 catgggga 31250141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 237 - 338
Target Start/End: Complemental strand, 43227967 - 43227866
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    |||||||||||||||||||| ||||||||||| ||||   || ||||||| ||||  |||||| ||| | |||||||||||||| |||  ||| ||||||    
T  43227967 tagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggcccctgcacatattgtgcattatcccttaccaaatgagctaagct 43227868  T
Q  337 ca 338  Q
    ||    
T  43227867 ca 43227866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 240 - 345
Target Start/End: Complemental strand, 3294181 - 3294076
Alignment:
Q  240 agaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagctcag 339  Q
    ||||||||||||||||| ||||||| |||  |||   |  ||||||| ||||  |||||||| | |||||||||||||||| ||||  |||||||||||     
T  3294181 agaaattcaccttaaagatgaataaatgggttgtccggaattcgaaccccggcccctgcataaattatgcattatcccttaacaagtaagttaagctcac 3294082  T
Q  340 ggggac 345  Q
    ||||||    
T  3294081 ggggac 3294076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 237 - 345
Target Start/End: Original strand, 4395845 - 4395953
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    |||||||||||||||||||| ||||||| ||| ||||   || ||||||||||||  |||||| | | |||||||||||  ||  |||  ||||||||||    
T  4395845 tagagaaattcaccttaaagatgaataaatggggtgtcaggggttcgaactccggcccctgcacacattatgcattatcatttgccaaatgagttaagct 4395944  T
Q  337 cagggggac 345  Q
    || ||||||    
T  4395945 catggggac 4395953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 263 - 318
Target Start/End: Complemental strand, 2328670 - 2328615
Alignment:
Q  263 aagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatccct 318  Q
    ||||||||||| | || ||||||| |||| |||||||||||||||||| |||||||    
T  2328670 aagtggagtgtctggggttcgaaccccggctcctgcatataatatgcaatatccct 2328615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 263 - 318
Target Start/End: Complemental strand, 42320395 - 42320340
Alignment:
Q  263 aagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatccct 318  Q
    ||||||||||||  || |||||||||||  |||||||||||||||||| |||||||    
T  42320395 aagtggagtgttcggggttcgaactccgactcctgcatataatatgcaatatccct 42320340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 240 - 338
Target Start/End: Complemental strand, 9628215 - 9628117
Alignment:
Q  240 agaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagctca 338  Q
    |||| |||||||||||| ||||||| | | |||| |  | ||||||| |||  ||||||||||| ||||||||||| |||| |||  ||||||||||||    
T  9628215 agaatttcaccttaaaggtgaataaatagggtgtctgaggttcgaaccccgaatcctgcatatattatgcattatctcttaccaaatgagttaagctca 9628117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 220 - 273
Target Start/End: Original strand, 15680877 - 15680931
Alignment:
Q  220 gtcaagtagcat-gcggatagagaaattcaccttaaagttgaataagtggagtgt 273  Q
    |||||||||| | |||| |||||||||||||||||||| ||||||||||| ||||    
T  15680877 gtcaagtagcctagcggttagagaaattcaccttaaaggtgaataagtggggtgt 15680931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 237 - 344
Target Start/End: Complemental strand, 1032671 - 1032564
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    |||||||||||||||||||| ||||||||||| |||| | || ||||||| || |  |||||| ||| | |||||||||||||| |||  ||| ||||||    
T  1032671 tagagaaattcaccttaaagatgaataagtggggtgtctggggttcgaaccccagcccctgcacatattgtgcattatcccttaccaaatgagctaagct 1032572  T
Q  337 caggggga 344  Q
    || |||||    
T  1032571 catgggga 1032564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 237 - 345
Target Start/End: Original strand, 41454821 - 41454929
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    ||||||||||||| |||||| ||||||||||| ||||   || ||||||| ||||  |||||| ||| | |||||||||||||| |||  ||| ||||||    
T  41454821 tagagaaattcacattaaagatgaataagtggggtgtccggggttcgaaccccggcccctgcacatattgtgcattatcccttaccaaatgagctaagct 41454920  T
Q  337 cagggggac 345  Q
    || ||||||    
T  41454921 catggggac 41454929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 237 - 320
Target Start/End: Original strand, 38289229 - 38289312
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatccctta 320  Q
    |||||||||||||||||||| ||||||||||| ||||||  | ||||||| |||   |||||| ||| | ||||||||||||||    
T  38289229 tagagaaattcaccttaaagatgaataagtggggtgtttgaggttcgaaccccgacccctgcacatattgtgcattatccctta 38289312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 237 - 320
Target Start/End: Original strand, 43413880 - 43413963
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatccctta 320  Q
    |||||||||||||||||||| ||||||||||| |||||| || ||||||| || |  |||||| | | | ||||||||||||||    
T  43413880 tagagaaattcaccttaaagatgaataagtggggtgtttgggattcgaaccccagcccctgcacaaattgtgcattatccctta 43413963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 248 - 338
Target Start/End: Original strand, 36103927 - 36104017
Alignment:
Q  248 accttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagctca 338  Q
    ||||||||| ||||||||||| |||||| || ||||||| ||||  |||||| ||| | |||||||||| ||| |||  ||||||||||||    
T  36103927 accttaaagatgaataagtggggtgtttggggttcgaaccccggcccctgcacatattgtgcattatcctttaccaaatgagttaagctca 36104017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 237 - 338
Target Start/End: Complemental strand, 4259960 - 4259859
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    |||||||||||||||||||| ||||||||||| | ||   || || |||| ||||  |||||| ||| | |||||||||||||| |||  ||||||||||    
T  4259960 tagagaaattcaccttaaagatgaataagtggggagtccggggttggaaccccggcccctgcacatattgtgcattatcccttaccaaatgagttaagct 4259861  T
Q  337 ca 338  Q
    ||    
T  4259860 ca 4259859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 237 - 346
Target Start/End: Original strand, 19733063 - 19733172
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    |||||||||||||||||||| ||||||| |   |||||  || ||||||| |||   |||||||||| |||||||||||||||| |||  ||| ||||||    
T  19733063 tagagaaattcaccttaaagatgaataatttaggtgttcgggattcgaaccccgacccctgcatatattatgcattatcccttaccaaatgagctaagct 19733162  T
Q  337 cagggggact 346  Q
     | |||||||    
T  19733163 tatggggact 19733172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 294 - 334
Target Start/End: Complemental strand, 18080983 - 18080943
Alignment:
Q  294 cctgcatataatatgcattatcccttatcaagagagttaag 334  Q
    ||||||||||||||||||||||||||| |||| ||||||||    
T  18080983 cctgcatataatatgcattatcccttaccaagtgagttaag 18080943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 237 - 345
Target Start/End: Complemental strand, 38064078 - 38063970
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    |||||||||||||||||||| ||||||||||| |||| | || ||| | | || || |||||| | | | |||||||||||||| |||  || |||||||    
T  38064078 tagagaaattcaccttaaagatgaataagtggggtgtctggggttcaacccccagtccctgcacaaattgtgcattatcccttaccaaatgaattaagct 38063979  T
Q  337 cagggggac 345  Q
    || ||||||    
T  38063978 catggggac 38063970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 263 - 318
Target Start/End: Original strand, 94503 - 94558
Alignment:
Q  263 aagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatccct 318  Q
    |||||||||||   || |||||||||||| |||||||||||||||||| |||||||    
T  94503 aagtggagtgtccggggttcgaactccggctcctgcatataatatgcaatatccct 94558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 263 - 318
Target Start/End: Complemental strand, 13406678 - 13406623
Alignment:
Q  263 aagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatccct 318  Q
    |||||||||||   || |||||||||||| |||||||||||||||||| |||||||    
T  13406678 aagtggagtgtccagggttcgaactccggctcctgcatataatatgcaatatccct 13406623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 220 - 273
Target Start/End: Complemental strand, 8145892 - 8145838
Alignment:
Q  220 gtcaagtagcat-gcggatagagaaattcaccttaaagttgaataagtggagtgt 273  Q
    |||||||||| | |||| |||||||||||||||||||| ||||||||||| ||||    
T  8145892 gtcaagtagcgtagcggttagagaaattcaccttaaaggtgaataagtggggtgt 8145838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 237 - 275
Target Start/End: Original strand, 11052578 - 11052616
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttt 275  Q
    |||||||||||||||||||| ||||||||||| ||||||    
T  11052578 tagagaaattcaccttaaagatgaataagtggggtgttt 11052616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 240 - 338
Target Start/End: Original strand, 41845426 - 41845524
Alignment:
Q  240 agaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagctca 338  Q
    ||||||||||||||||| ||||||| | | |||||  || ||||||| ||| | |||||| ||| | |||||||||||||| |||  ||| ||||||||    
T  41845426 agaaattcaccttaaagatgaataaatagggtgttcggggttcgaaccccgatccctgcacatattgtgcattatcccttaccaaatgagctaagctca 41845524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 338
Target Start/End: Complemental strand, 22652784 - 22652683
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    |||||||||||||||| ||  ||||||| ||| ||||   || ||||||| ||||  |||||| | | ||||||||||||||||||||  ||| ||||||    
T  22652784 tagagaaattcacctttaacatgaataattggggtgtccggggttcgaacaccggcccctgcacaaattatgcattatcccttatcaaatgagctaagct 22652685  T
Q  337 ca 338  Q
    ||    
T  22652684 ca 22652683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 338
Target Start/End: Original strand, 34037942 - 34038043
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    |||| |||||||| |||||| |||||||||||  ||| | || |||||||||||   |||||| ||| | || |||||||||||||||   |||||||||    
T  34037942 tagaaaaattcactttaaagatgaataagtgggatgtctgggattcgaactccgccccctgcacatattgtgtattatcccttatcaaataagttaagct 34038041  T
Q  337 ca 338  Q
    ||    
T  34038042 ca 34038043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 344
Target Start/End: Complemental strand, 37717441 - 37717361
Alignment:
Q  263 aagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagctcaggggga 344  Q
    |||||||||||   || ||||||| |||| |||||||||||||||||| |||||| || |||  |||||||||||| |||||    
T  37717441 aagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccc-taccaactgagttaagctcacgggga 37717361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 237 - 345
Target Start/End: Complemental strand, 419813 - 419705
Alignment:
Q  237 tagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattatcccttatcaagagagttaagct 336  Q
    |||||||||||||||||||| ||||||||||| ||||   || ||||||| ||||  |||||| ||| | | |||||||||||| |||  ||| ||||||    
T  419813 tagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggcccctgcacatattgttcattatcccttaccaaatgagctaagct 419714  T
Q  337 cagggggac 345  Q
    || ||||||    
T  419713 catggggac 419705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 314
Target Start/End: Original strand, 17725 - 17804
Alignment:
Q  235 gatagagaaattcaccttaaagttgaataagtggagtgttttggcttcgaactccggttcctgcatataatatgcattat 314  Q
    |||||||||||||||||||||  ||||||||||  |||| |  | ||||||||||  | |||||||||| ||||||||||    
T  17725 gatagagaaattcaccttaaaaatgaataagtgaggtgtctgaggttcgaactccaatccctgcatatattatgcattat 17804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0608 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 280 - 318
Target Start/End: Complemental strand, 9027 - 8989
Alignment:
Q  280 ttcgaactccggttcctgcatataatatgcattatccct 318  Q
    |||||||||||| |||||||||||||||||| |||||||    
T  9027 ttcgaactccggctcctgcatataatatgcaatatccct 8989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 265 - 318
Target Start/End: Original strand, 266691 - 266744
Alignment:
Q  265 gtggagtgttttggcttcgaactccggttcctgcatataatatgcattatccct 318  Q
    ||||||||| | || ||||||| |||| |||||||||||||||||| |||||||    
T  266691 gtggagtgtctgggtttcgaaccccggctcctgcatataatatgcaatatccct 266744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University