View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3772_low_32 (Length: 447)

Name: NF3772_low_32
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3772_low_32
NF3772_low_32
[»] chr1 (19 HSPs)
chr1 (1-437)||(9629926-9630371)
chr1 (361-438)||(14359547-14359623)
chr1 (361-437)||(36878417-36878494)
chr1 (381-437)||(398791-398847)
chr1 (361-437)||(5898292-5898368)
chr1 (381-437)||(20157376-20157432)
chr1 (382-437)||(17754289-17754344)
chr1 (404-437)||(2896147-2896180)
chr1 (404-437)||(9828044-9828077)
chr1 (404-437)||(17425119-17425152)
chr1 (381-438)||(25272459-25272516)
chr1 (361-438)||(48450612-48450689)
chr1 (405-437)||(2851022-2851054)
chr1 (405-437)||(6427351-6427383)
chr1 (381-437)||(7918237-7918293)
chr1 (405-437)||(9709821-9709853)
chr1 (358-437)||(24577212-24577292)
chr1 (361-437)||(27471592-27471668)
chr1 (381-437)||(34298413-34298469)
[»] chr6 (21 HSPs)
chr6 (384-438)||(10888999-10889053)
chr6 (381-438)||(7086772-7086829)
chr6 (381-438)||(8805597-8805654)
chr6 (361-437)||(2117034-2117109)
chr6 (384-437)||(30866170-30866223)
chr6 (382-438)||(25038096-25038152)
chr6 (363-434)||(16833267-16833338)
chr6 (385-436)||(25096404-25096455)
chr6 (404-438)||(10842532-10842566)
chr6 (403-437)||(32320695-32320729)
chr6 (381-438)||(7625099-7625156)
chr6 (404-437)||(17341690-17341723)
chr6 (404-437)||(19040352-19040385)
chr6 (360-437)||(32511692-32511769)
chr6 (405-437)||(1532241-1532273)
chr6 (405-437)||(7265619-7265651)
chr6 (381-437)||(9027155-9027211)
chr6 (381-437)||(9658856-9658912)
chr6 (361-437)||(10770700-10770776)
chr6 (381-437)||(13851713-13851769)
chr6 (405-437)||(28919587-28919619)
[»] chr3 (9 HSPs)
chr3 (390-437)||(15544679-15544726)
chr3 (354-437)||(26508060-26508143)
chr3 (391-437)||(21257012-21257058)
chr3 (384-434)||(34307809-34307859)
chr3 (404-437)||(7928450-7928483)
chr3 (381-438)||(11665921-11665978)
chr3 (381-438)||(25064886-25064943)
chr3 (381-437)||(5441057-5441113)
chr3 (390-438)||(49505179-49505227)
[»] chr7 (13 HSPs)
chr7 (362-438)||(15902780-15902856)
chr7 (381-437)||(26733281-26733337)
chr7 (390-437)||(42720916-42720963)
chr7 (382-438)||(11061101-11061157)
chr7 (381-437)||(19206027-19206083)
chr7 (363-433)||(28401102-28401172)
chr7 (384-437)||(598188-598241)
chr7 (381-438)||(5235963-5236020)
chr7 (365-437)||(11722124-11722197)
chr7 (384-437)||(20549771-20549824)
chr7 (404-437)||(29787395-29787428)
chr7 (404-437)||(32308120-32308153)
chr7 (393-437)||(17851420-17851464)
[»] scaffold0020 (1 HSPs)
scaffold0020 (382-437)||(135338-135393)
[»] chr8 (14 HSPs)
chr8 (382-437)||(24362228-24362283)
chr8 (381-438)||(8343293-8343350)
chr8 (381-437)||(12570534-12570590)
chr8 (390-438)||(39954304-39954352)
chr8 (370-437)||(24669399-24669466)
chr8 (390-437)||(34897071-34897118)
chr8 (403-437)||(18067960-18067994)
chr8 (404-438)||(27101515-27101549)
chr8 (381-438)||(2572081-2572138)
chr8 (361-437)||(27067324-27067403)
chr8 (389-437)||(12570760-12570808)
chr8 (362-438)||(20873027-20873103)
chr8 (381-437)||(22651953-22652009)
chr8 (381-437)||(36934647-36934703)
[»] chr5 (3 HSPs)
chr5 (384-439)||(7175043-7175098)
chr5 (404-438)||(23220983-23221017)
chr5 (384-438)||(27144443-27144497)
[»] chr4 (7 HSPs)
chr4 (361-437)||(22440626-22440702)
chr4 (384-419)||(35160982-35161017)
chr4 (390-437)||(56488536-56488583)
chr4 (390-436)||(1074784-1074830)
chr4 (404-437)||(8423744-8423777)
chr4 (384-437)||(34589732-34589785)
chr4 (381-437)||(20521875-20521931)
[»] chr2 (13 HSPs)
chr2 (381-437)||(21616739-21616795)
chr2 (390-434)||(29970578-29970622)
chr2 (361-437)||(30404876-30404952)
chr2 (381-438)||(20539699-20539756)
chr2 (384-437)||(23718006-23718059)
chr2 (384-437)||(24105678-24105731)
chr2 (404-437)||(28677909-28677942)
chr2 (404-437)||(37411270-37411303)
chr2 (381-437)||(12940961-12941017)
chr2 (361-437)||(18841039-18841115)
chr2 (381-437)||(21782844-21782900)
chr2 (361-437)||(27286318-27286394)
chr2 (405-437)||(28412351-28412383)
[»] scaffold1528 (1 HSPs)
scaffold1528 (382-437)||(1013-1068)
[»] scaffold0003 (1 HSPs)
scaffold0003 (361-438)||(241550-241628)
[»] scaffold0085 (1 HSPs)
scaffold0085 (384-437)||(26373-26426)


Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 9630371 - 9629926
Alignment:
Q  1 caagtcctagaataatctacccaattagtccaagaactccataccaatggttgcaacaatgtggtggttacctttcatctgagccatctccaacttcttc 100  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9630371 caagtcctagaataatcttcccaattagtccaagaactccatcccaatggttgcaacaatgtggtggttacctttcatctgagccatctccaacttcttc 9630272  T
Q  101 agcttcttcgatcaacgacaacatcaacgaacttgtcggaaattcaacgtcttcggttgctgatgttgaggttaagttttgtggttcacatgtgcttttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9630271 agcttcttcgatcaacgacaacatcaacgaacttgtcggaaattcaacgtctttggttgctgatgttgaggttaagttttgtggttcacatgtgcttttg 9630172  T
Q  201 aaaaccgtttcgtcgcgaattccggggcaggctcttagaataatgtctgttcttgaagatctaaggcttgagattgttcatgttagagttaatactgctg 300  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9630171 aaaaccgtttcgtcacgaattccggggcaggctcttagaataatgtctgttcttgaagatctaaggcttgagattgttcatgttagagttaatactgctg 9630072  T
Q  301 atgaaaccatgctatacttgttcactattaaggtaacttaatc---------ttttttctgattacacactatgaagcacggagacggccacgacacaga 391  Q
    |||||||||||||||||||||| ||||||||||||||||||||         ||||||||| ||||||||||||||||||||| ||||||||||||  ||    
T  9630071 atgaaaccatgctatacttgtttactattaaggtaacttaatctttgtgtatttttttctggttacacactatgaagcacggatacggccacgacatgga 9629972  T
Q  392 caccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||    
T  9629971 caccgacacatcgacaccgctaataatttgataaaatcatataatt 9629926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 361 - 438
Target Start/End: Complemental strand, 14359623 - 14359547
Alignment:
Q  361 ctatgaagcacggagacggccacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataattt 438  Q
    |||||||||||||| |||| |||||||||||||| |||||   ||||| ||||||||||||| |||||||||||||||    
T  14359623 ctatgaagcacggatacggacacgacacagacacggacacgccgacacagctaataatttga-aaaatcacataattt 14359547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 361 - 437
Target Start/End: Original strand, 36878417 - 36878494
Alignment:
Q  361 ctatgaagcacggagacggccacg-acacagacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    |||||||||||||| |||| |||| ||| |||||| |||||   ||||||||||||||||||| ||||||||||||||    
T  36878417 ctatgaagcacggatacggacacggacatagacactgacacgccgacaccgctaataatttgagaaaatcacataatt 36878494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 437
Target Start/End: Complemental strand, 398847 - 398791
Alignment:
Q  381 cacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    |||||||| ||||| |||||   ||||||||||||||||||| ||||||||||||||    
T  398847 cacgacacggacactgacacgccgacaccgctaataatttgaaaaaatcacataatt 398791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 437
Target Start/End: Complemental strand, 5898368 - 5898292
Alignment:
Q  361 ctatgaagcacggagacggccacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    ||||| |||||||| |||| || ||||||||||| || ||   ||||||||||||||| ||| ||||||||||||||    
T  5898368 ctatgtagcacggatacggacatgacacagacactgagacgccgacaccgctaataatctgaaaaaatcacataatt 5898292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 437
Target Start/End: Complemental strand, 20157432 - 20157376
Alignment:
Q  381 cacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    |||||||| | ||| ||||||| ||||||||||||||| ||| ||||||||||||||    
T  20157432 cacgacacgggcactgacacatcgacaccgctaataatgtgagaaaatcacataatt 20157376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 437
Target Start/End: Original strand, 17754289 - 17754344
Alignment:
Q  382 acgacacagacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    ||||||||||| | ||||||  ||||||||||||||||||| ||||| ||||||||    
T  17754289 acgacacagacgctgacacaccgacaccgctaataatttgaaaaaattacataatt 17754344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 437
Target Start/End: Complemental strand, 2896180 - 2896147
Alignment:
Q  404 gacaccgctaataatttgataaaatcacataatt 437  Q
    ||||||||||||||||||| ||||||||||||||    
T  2896180 gacaccgctaataatttgagaaaatcacataatt 2896147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 437
Target Start/End: Original strand, 9828044 - 9828077
Alignment:
Q  404 gacaccgctaataatttgataaaatcacataatt 437  Q
    |||||| |||||||||||||||||||||||||||    
T  9828044 gacaccactaataatttgataaaatcacataatt 9828077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 437
Target Start/End: Complemental strand, 17425152 - 17425119
Alignment:
Q  404 gacaccgctaataatttgataaaatcacataatt 437  Q
    ||||||| ||||||||||||||||||||||||||    
T  17425152 gacaccgataataatttgataaaatcacataatt 17425119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 438
Target Start/End: Original strand, 25272459 - 25272516
Alignment:
Q  381 cacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataattt 438  Q
    ||||||||| |||| ||||| ||||||| | ||| ||||||| |||||||||||||||    
T  25272459 cacgacacaaacacagacactttgacacagttaacaatttgagaaaatcacataattt 25272516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 438
Target Start/End: Complemental strand, 48450689 - 48450612
Alignment:
Q  361 ctatgaagcacggagacggccacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataattt 438  Q
    |||||||||| ||| |||| |||||||| ||||| |||||    |||| ||||||||||||| ||||| |||||||||    
T  48450689 ctatgaagcatggatacggacacgacacggacactgacacgccaacacagctaataatttgaaaaaataacataattt 48450612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 405 - 437
Target Start/End: Original strand, 2851022 - 2851054
Alignment:
Q  405 acaccgctaataatttgataaaatcacataatt 437  Q
    |||||||||||||||||||||||| ||||||||    
T  2851022 acaccgctaataatttgataaaattacataatt 2851054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 405 - 437
Target Start/End: Original strand, 6427351 - 6427383
Alignment:
Q  405 acaccgctaataatttgataaaatcacataatt 437  Q
    |||||||||||||||||| ||||||||||||||    
T  6427351 acaccgctaataatttgagaaaatcacataatt 6427383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 437
Target Start/End: Complemental strand, 7918293 - 7918237
Alignment:
Q  381 cacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    |||||||||||||  |||||  ||||| | |||||||||||| ||||||||||||||    
T  7918293 cacgacacagacaatgacacgctgacatcactaataatttgagaaaatcacataatt 7918237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 405 - 437
Target Start/End: Original strand, 9709821 - 9709853
Alignment:
Q  405 acaccgctaataatttgataaaatcacataatt 437  Q
    |||||||||||||||||| ||||||||||||||    
T  9709821 acaccgctaataatttgagaaaatcacataatt 9709853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 437
Target Start/End: Complemental strand, 24577292 - 24577212
Alignment:
Q  358 acactatgaagcacggagacggccacgacaca-gacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    ||||||||||||||||| |||| |||   ||| ||||| |||||  ||||||  |||||||||||| ||||||||||||||    
T  24577292 acactatgaagcacggatacggacactgaacacgacacggacacgctgacacaactaataatttgaaaaaatcacataatt 24577212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 437
Target Start/End: Complemental strand, 27471668 - 27471592
Alignment:
Q  361 ctatgaagcacggagacggccacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    |||||||||||  | |||| | ||||||| |||| ||||||  || |||||||||||||||| |||| |||||||||    
T  27471668 ctatgaagcacatatacggacgcgacacaaacactgacacaccgataccgctaataatttgagaaaagcacataatt 27471592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 437
Target Start/End: Original strand, 34298413 - 34298469
Alignment:
Q  381 cacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    |||||||| || || ||||||  |||||| |||||||||||| ||||||||||||||    
T  34298413 cacgacacggaaactgacacaccgacaccactaataatttgagaaaatcacataatt 34298469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 384 - 438
Target Start/End: Complemental strand, 10889053 - 10888999
Alignment:
Q  384 gacacagacaccgacacattgacaccgctaataatttgataaaatcacataattt 438  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10889053 gacacggacaccgacacatagacaccgctaataatttgataaaatcacataattt 10888999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 381 - 438
Target Start/End: Original strand, 7086772 - 7086829
Alignment:
Q  381 cacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataattt 438  Q
    |||||||||||||||||||| | | ||| ||||||||||||| |||||||||||||||    
T  7086772 cacgacacagacaccgacacgtcggcactgctaataatttgagaaaatcacataattt 7086829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 381 - 438
Target Start/End: Complemental strand, 8805654 - 8805597
Alignment:
Q  381 cacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataattt 438  Q
    |||||||||||||||||||| | | ||| ||||||||||||| |||||||||||||||    
T  8805654 cacgacacagacaccgacacgtcggcactgctaataatttgagaaaatcacataattt 8805597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 361 - 437
Target Start/End: Original strand, 2117034 - 2117109
Alignment:
Q  361 ctatgaagcacggagacggccacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    ||||||||||||||||||| |||||||| || || |||||   |||||| |||||||||||| ||||||||||||||    
T  2117034 ctatgaagcacggagacggacacgacac-gatacggacactccgacacctctaataatttgaaaaaatcacataatt 2117109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 384 - 437
Target Start/End: Complemental strand, 30866223 - 30866170
Alignment:
Q  384 gacacagacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    ||||| ||||||||||||   |||||||||||||||||| ||||||||||||||    
T  30866223 gacactgacaccgacacaccaacaccgctaataatttgagaaaatcacataatt 30866170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 438
Target Start/End: Complemental strand, 25038152 - 25038096
Alignment:
Q  382 acgacacagacaccgacacattgacaccgctaataatttgataaaatcacataattt 438  Q
    |||||||||| || ||||| ||||||||| ||||||||||| ||||| |||||||||    
T  25038152 acgacacagatactgacacgttgacaccgttaataatttgagaaaattacataattt 25038096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 434
Target Start/End: Original strand, 16833267 - 16833338
Alignment:
Q  363 atgaagcacggagacggccacgacacagacaccgacacattgacaccgctaataatttgataaaatcacata 434  Q
    ||||||||| || |||| |||||||||||||| |||||   |||||  |||||||||||| |||||||||||    
T  16833267 atgaagcactgatacggacacgacacagacactgacacgccgacacaactaataatttgaaaaaatcacata 16833338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 436
Target Start/End: Original strand, 25096404 - 25096455
Alignment:
Q  385 acacagacaccgacacattgacaccgctaataatttgataaaatcacataat 436  Q
    ||||||||||||||||   |||||| |||||||||||| |||||||||||||    
T  25096404 acacagacaccgacacgacgacaccactaataatttgagaaaatcacataat 25096455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 438
Target Start/End: Original strand, 10842532 - 10842566
Alignment:
Q  404 gacaccgctaataatttgataaaatcacataattt 438  Q
    ||||||||||||||||||| |||||||||||||||    
T  10842532 gacaccgctaataatttgaaaaaatcacataattt 10842566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 437
Target Start/End: Complemental strand, 32320729 - 32320695
Alignment:
Q  403 tgacaccgctaataatttgataaaatcacataatt 437  Q
    |||||||| ||||||||||||||||||||||||||    
T  32320729 tgacaccgttaataatttgataaaatcacataatt 32320695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 438
Target Start/End: Original strand, 7625099 - 7625156
Alignment:
Q  381 cacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataattt 438  Q
    |||||||||||||||||||| | ||||| | ||||||||||| ||||| | |||||||    
T  7625099 cacgacacagacaccgacacgtcgacacggataataatttgagaaaatgatataattt 7625156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 437
Target Start/End: Complemental strand, 17341723 - 17341690
Alignment:
Q  404 gacaccgctaataatttgataaaatcacataatt 437  Q
    ||||||| ||||||||||||||||||||||||||    
T  17341723 gacaccgttaataatttgataaaatcacataatt 17341690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 437
Target Start/End: Original strand, 19040352 - 19040385
Alignment:
Q  404 gacaccgctaataatttgataaaatcacataatt 437  Q
    ||||||||||||||||||| ||||||||||||||    
T  19040352 gacaccgctaataatttgagaaaatcacataatt 19040385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 437
Target Start/End: Complemental strand, 32511769 - 32511692
Alignment:
Q  360 actatgaagcacggagacggccacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    ||||||||||||||| || | || ||||||||||  | | |  |||||||||||||||||| | ||||||||||||||    
T  32511769 actatgaagcacggataccgacatgacacagacattgcccctctgacaccgctaataatttaagaaaatcacataatt 32511692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 405 - 437
Target Start/End: Original strand, 1532241 - 1532273
Alignment:
Q  405 acaccgctaataatttgataaaatcacataatt 437  Q
    |||||||||||||||||||||||| ||||||||    
T  1532241 acaccgctaataatttgataaaattacataatt 1532273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 405 - 437
Target Start/End: Complemental strand, 7265651 - 7265619
Alignment:
Q  405 acaccgctaataatttgataaaatcacataatt 437  Q
    |||||||||||||||||| ||||||||||||||    
T  7265651 acaccgctaataatttgagaaaatcacataatt 7265619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 437
Target Start/End: Original strand, 9027155 - 9027211
Alignment:
Q  381 cacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    |||||||| ||||| |||||   ||||||||||||||||||| | ||||||||||||    
T  9027155 cacgacacggacactgacacgccgacaccgctaataatttgagataatcacataatt 9027211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 437
Target Start/End: Original strand, 9658856 - 9658912
Alignment:
Q  381 cacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    |||||||| ||||| |||||   ||||||||||||||||| | ||||||||||||||    
T  9658856 cacgacacggacactgacacgccgacaccgctaataatttaagaaaatcacataatt 9658912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 437
Target Start/End: Complemental strand, 10770776 - 10770700
Alignment:
Q  361 ctatgaagcacggagacggccacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    |||||||||||||| |||| |||||||  ||||| |||||    ||||  |||||||||||| ||||||||||||||    
T  10770776 ctatgaagcacggatacggacacgacatggacactgacacgccaacacaactaataatttgaaaaaatcacataatt 10770700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 437
Target Start/End: Original strand, 13851713 - 13851769
Alignment:
Q  381 cacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    |||||||| ||||| ||||| | ||||||||||||||||||| ||||| || |||||    
T  13851713 cacgacacggacactgacacgtcgacaccgctaataatttgagaaaataacgtaatt 13851769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 405 - 437
Target Start/End: Complemental strand, 28919619 - 28919587
Alignment:
Q  405 acaccgctaataatttgataaaatcacataatt 437  Q
    |||||||||||||||||||||| ||||||||||    
T  28919619 acaccgctaataatttgataaattcacataatt 28919587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 390 - 437
Target Start/End: Original strand, 15544679 - 15544726
Alignment:
Q  390 gacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  15544679 gacactgacacgttgacaccgctaataatttgataaaatcacataatt 15544726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 437
Target Start/End: Original strand, 26508060 - 26508143
Alignment:
Q  354 ttacacactatgaagcacggagacggccacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    |||||| |||||||| ||||| |||| ||||| ||||| || |||||  |||||| ||||||||||||| ||||||||||||||    
T  26508060 ttacacgctatgaagaacggatacggacacgatacagatactgacacgctgacacagctaataatttgaaaaaatcacataatt 26508143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 437
Target Start/End: Complemental strand, 21257058 - 21257012
Alignment:
Q  391 acaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    ||||||||||  |||||| ||||||||||||| ||||||||||||||    
T  21257058 acaccgacacgatgacacagctaataatttgaaaaaatcacataatt 21257012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 434
Target Start/End: Complemental strand, 34307859 - 34307809
Alignment:
Q  384 gacacagacaccgacacattgacaccgctaataatttgataaaatcacata 434  Q
    |||||||||||  ||||  |||||||||||||||||||| |||||||||||    
T  34307859 gacacagacacgaacacgctgacaccgctaataatttgagaaaatcacata 34307809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 437
Target Start/End: Original strand, 7928450 - 7928483
Alignment:
Q  404 gacaccgctaataatttgataaaatcacataatt 437  Q
    ||||||||||||||||||| ||||||||||||||    
T  7928450 gacaccgctaataatttgaaaaaatcacataatt 7928483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 438
Target Start/End: Original strand, 11665921 - 11665978
Alignment:
Q  381 cacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataattt 438  Q
    ||||||||| ||||  |||||  |||| |||||||||||||||||||||||| |||||    
T  11665921 cacgacacacacactaacacaccgacaacgctaataatttgataaaatcacacaattt 11665978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 438
Target Start/End: Original strand, 25064886 - 25064943
Alignment:
Q  381 cacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataattt 438  Q
    |||||||||||||  |||||   |||||||||||| |||||| |||||||||||||||    
T  25064886 cacgacacagacattgacacgccgacaccgctaatgatttgaaaaaatcacataattt 25064943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 437
Target Start/End: Complemental strand, 5441113 - 5441057
Alignment:
Q  381 cacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    |||||||||||||| |||||   | ||||||||| ||||||| ||||||||||||||    
T  5441113 cacgacacagacactgacacgccgtcaccgctaaaaatttgagaaaatcacataatt 5441057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 438
Target Start/End: Complemental strand, 49505227 - 49505179
Alignment:
Q  390 gacaccgacacattgacaccgctaataatttgataaaatcacataattt 438  Q
    |||||||||||   || |||||||||||||||| |||||||||||||||    
T  49505227 gacaccgacacgcagagaccgctaataatttgagaaaatcacataattt 49505179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 362 - 438
Target Start/End: Original strand, 15902780 - 15902856
Alignment:
Q  362 tatgaagcacggagacggccacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataattt 438  Q
    ||||||||||| | |||| |||||||||||||| ||||    ||||||  |||||||||||||||||||||||||||    
T  15902780 tatgaagcacgaatacggacacgacacagacactgacatgccgacaccaataataatttgataaaatcacataattt 15902856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 437
Target Start/End: Original strand, 26733281 - 26733337
Alignment:
Q  381 cacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    |||||||| ||||| ||||| | ||||||||||||||||||| ||||||||||||||    
T  26733281 cacgacacggacactgacacgtcgacaccgctaataatttgacaaaatcacataatt 26733337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 390 - 437
Target Start/End: Complemental strand, 42720963 - 42720916
Alignment:
Q  390 gacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    ||||| ||||| ||||||||||||||||||||| ||||||||||||||    
T  42720963 gacactgacacgttgacaccgctaataatttgaaaaaatcacataatt 42720916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 438
Target Start/End: Complemental strand, 11061157 - 11061101
Alignment:
Q  382 acgacacagacaccgacacattgacaccgctaataatttgataaaatcacataattt 438  Q
    ||||||| ||||| ||||||  ||||| ||||||||||||| |||||||||||||||    
T  11061157 acgacacggacactgacacaccgacacagctaataatttgaaaaaatcacataattt 11061101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 437
Target Start/End: Original strand, 19206027 - 19206083
Alignment:
Q  381 cacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    |||||||| |||||| ||||   ||||||||||||||||||| ||||||||||||||    
T  19206027 cacgacacggacaccaacacgccgacaccgctaataatttgagaaaatcacataatt 19206083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 433
Target Start/End: Original strand, 28401102 - 28401172
Alignment:
Q  363 atgaagcacggagacggccacgacacagacaccgacacattgacaccgctaataatttgataaaatcacat 433  Q
    |||||||||||| |||| |||||||| | |||| |||| | |||||  |||||||||||| ||||||||||    
T  28401102 atgaagcacggatacggacacgacacgggcaccaacacgtcgacactactaataatttgagaaaatcacat 28401172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 437
Target Start/End: Original strand, 598188 - 598241
Alignment:
Q  384 gacacagacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    ||||| ||||| ||||||| ||||||||||||||||| | |||||||| |||||    
T  598188 gacacggacactgacacatcgacaccgctaataatttaagaaaatcacgtaatt 598241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 438
Target Start/End: Original strand, 5235963 - 5236020
Alignment:
Q  381 cacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataattt 438  Q
    |||||||||||||| ||||| | ||||||||||||||||| | ||||| | |||||||    
T  5235963 cacgacacagacactgacacgtcgacaccgctaataatttaagaaaattatataattt 5236020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 437
Target Start/End: Complemental strand, 11722197 - 11722124
Alignment:
Q  365 gaagcacggagac-ggccacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    |||||||||| || || |||||||| ||||| |||||   ||||||||||| ||||||| ||||||||||||||    
T  11722197 gaagcacggataccggacacgacacggacactgacacgccgacaccgctaacaatttgagaaaatcacataatt 11722124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 437
Target Start/End: Original strand, 20549771 - 20549824
Alignment:
Q  384 gacacagacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    |||||| |||| ||||||  ||||||||||||||||||| |||||||| |||||    
T  20549771 gacacatacactgacacaccgacaccgctaataatttgagaaaatcacgtaatt 20549824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 437
Target Start/End: Complemental strand, 29787428 - 29787395
Alignment:
Q  404 gacaccgctaataatttgataaaatcacataatt 437  Q
    ||||||||||||||||||| ||||||||||||||    
T  29787428 gacaccgctaataatttgagaaaatcacataatt 29787395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 437
Target Start/End: Original strand, 32308120 - 32308153
Alignment:
Q  404 gacaccgctaataatttgataaaatcacataatt 437  Q
    ||||||||||||||||||| ||||||||||||||    
T  32308120 gacaccgctaataatttgagaaaatcacataatt 32308153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 393 - 437
Target Start/End: Original strand, 17851420 - 17851464
Alignment:
Q  393 accgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    |||||||||| || |||||||||||||| | ||||||||||||||    
T  17851420 accgacacatcgataccgctaataattttagaaaatcacataatt 17851464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 382 - 437
Target Start/End: Complemental strand, 135393 - 135338
Alignment:
Q  382 acgacacagacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    |||||||||||||| |||||  ||||| ||||||||||||| ||||||||||||||    
T  135393 acgacacagacaccaacacaccgacactgctaataatttgagaaaatcacataatt 135338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 382 - 437
Target Start/End: Complemental strand, 24362283 - 24362228
Alignment:
Q  382 acgacacagacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    |||||||||||||||||||   ||||||||||||||||||| | ||||||||||||    
T  24362283 acgacacagacaccgacacgccgacaccgctaataatttgagagaatcacataatt 24362228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 381 - 438
Target Start/End: Original strand, 8343293 - 8343350
Alignment:
Q  381 cacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataattt 438  Q
    |||||||| ||||||||||||  ||||  ||||||||||||| |||||||||||||||    
T  8343293 cacgacactgacaccgacacaccgacatagctaataatttgaaaaaatcacataattt 8343350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 437
Target Start/End: Complemental strand, 12570590 - 12570534
Alignment:
Q  381 cacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    ||||| |||||||||||||| ||||||| ||||||||||| | |||| |||||||||    
T  12570590 cacgatacagacaccgacacgttgacactgctaataatttaagaaaaacacataatt 12570534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 438
Target Start/End: Complemental strand, 39954352 - 39954304
Alignment:
Q  390 gacaccgacacattgacaccgctaataatttgataaaatcacataattt 438  Q
    |||||||||||   ||||||||||||||||||| |||||||||||||||    
T  39954352 gacaccgacacgccgacaccgctaataatttgagaaaatcacataattt 39954304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 437
Target Start/End: Original strand, 24669399 - 24669466
Alignment:
Q  370 acggagacggccacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    ||||| |||| |||||||||||||| |||||  |||||||| |||||||||||  |||| ||||||||    
T  24669399 acggacacggacacgacacagacactgacacgctgacaccgttaataatttgaggaaattacataatt 24669466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 437
Target Start/End: Original strand, 34897071 - 34897118
Alignment:
Q  390 gacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    ||||| ||||| | ||||||||||||||||||| ||||||||||||||    
T  34897071 gacacagacacgtcgacaccgctaataatttgagaaaatcacataatt 34897118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 437
Target Start/End: Complemental strand, 18067994 - 18067960
Alignment:
Q  403 tgacaccgctaataatttgataaaatcacataatt 437  Q
    |||||||||||||||||||| ||||||||||||||    
T  18067994 tgacaccgctaataatttgagaaaatcacataatt 18067960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 438
Target Start/End: Original strand, 27101515 - 27101549
Alignment:
Q  404 gacaccgctaataatttgataaaatcacataattt 438  Q
    ||||||||||||||||||| |||||||||||||||    
T  27101515 gacaccgctaataatttgaaaaaatcacataattt 27101549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 438
Target Start/End: Complemental strand, 2572138 - 2572081
Alignment:
Q  381 cacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataattt 438  Q
    |||||||| || |||||||| | |||||  |||||||||||| |||||||||||||||    
T  2572138 cacgacacggataccgacacgtcgacacacctaataatttgaaaaaatcacataattt 2572081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 437
Target Start/End: Complemental strand, 27067403 - 27067324
Alignment:
Q  361 ctatgaagcacggagacggccacgacacagacaccgacacatt---gacaccgctaataatttgataaaatcacataatt 437  Q
    |||||||||||||| |||| |||||||||| ||| |||||| |   |||||| ||||| |||||| ||||| ||||||||    
T  27067403 ctatgaagcacggatacggacacgacacagtcactgacacactgccgacaccactaatgatttgagaaaattacataatt 27067324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 389 - 437
Target Start/End: Complemental strand, 12570808 - 12570760
Alignment:
Q  389 agacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    |||||||||||| ||||||||||||||||||| | |||| | |||||||    
T  12570808 agacaccgacacgttgacaccgctaataatttaagaaaaacgcataatt 12570760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 438
Target Start/End: Original strand, 20873027 - 20873103
Alignment:
Q  362 tatgaagcacggagacggccacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataattt 438  Q
    ||||||||||| | |||| |||||||| ||||| |||||   ||||  | ||||||||||| |||||||||||||||    
T  20873027 tatgaagcacgaatacggacacgacacggacactgacacgccgacatagataataatttgaaaaaatcacataattt 20873103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 437
Target Start/End: Original strand, 22651953 - 22652009
Alignment:
Q  381 cacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    |||||||| ||||| |||||   ||||| ||||||||||||| ||||||||||||||    
T  22651953 cacgacacggacactgacacgccgacacagctaataatttgaaaaaatcacataatt 22652009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 437
Target Start/End: Original strand, 36934647 - 36934703
Alignment:
Q  381 cacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    |||||||| |||||  |||| | |||||||||||||||| || ||||||||||||||    
T  36934647 cacgacacggacactaacacgtcgacaccgctaataattcgaaaaaatcacataatt 36934703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 384 - 439
Target Start/End: Complemental strand, 7175098 - 7175043
Alignment:
Q  384 gacacagacaccgacacattgacaccgctaataatttgataaaatcacataatttg 439  Q
    ||||| ||||| ||||||| ||||||| ||||||||||| ||||||||||||||||    
T  7175098 gacacggacactgacacatcgacaccgttaataatttgagaaaatcacataatttg 7175043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 438
Target Start/End: Original strand, 23220983 - 23221017
Alignment:
Q  404 gacaccgctaataatttgataaaatcacataattt 438  Q
    |||||||||||||||||||||||||||||||||||    
T  23220983 gacaccgctaataatttgataaaatcacataattt 23221017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 438
Target Start/End: Original strand, 27144443 - 27144497
Alignment:
Q  384 gacacagacaccgacacattgacaccgctaataatttgataaaatcacataattt 438  Q
    ||||||||||| |||||   |||||||||||||||||||  ||||||||||||||    
T  27144443 gacacagacactgacacgccgacaccgctaataatttgaggaaatcacataattt 27144497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 437
Target Start/End: Complemental strand, 22440702 - 22440626
Alignment:
Q  361 ctatgaagcacggagacggccacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    ||||||| |||||| || | |||||||  ||||| || |||| ||||||| ||||||||||| ||||||||||||||    
T  22440702 ctatgaaacacggatacagacacgacatggacactgatacatcgacaccgttaataatttgagaaaatcacataatt 22440626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 419
Target Start/End: Original strand, 35160982 - 35161017
Alignment:
Q  384 gacacagacaccgacacattgacaccgctaataatt 419  Q
    ||||| ||||||||||||||||||||||||||||||    
T  35160982 gacacggacaccgacacattgacaccgctaataatt 35161017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 437
Target Start/End: Complemental strand, 56488583 - 56488536
Alignment:
Q  390 gacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    ||||||||||| ||||||||||||| ||||||| ||||||| ||||||    
T  56488583 gacaccgacacgttgacaccgctaacaatttgagaaaatcatataatt 56488536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 436
Target Start/End: Original strand, 1074784 - 1074830
Alignment:
Q  390 gacaccgacacattgacaccgctaataatttgataaaatcacataat 436  Q
    ||||| |||||| ||||||| |||||||||||| |||||||||||||    
T  1074784 gacacggacacactgacaccactaataatttgagaaaatcacataat 1074830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 437
Target Start/End: Complemental strand, 8423777 - 8423744
Alignment:
Q  404 gacaccgctaataatttgataaaatcacataatt 437  Q
    ||||||||||||||||||| ||||||||||||||    
T  8423777 gacaccgctaataatttgagaaaatcacataatt 8423744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 437
Target Start/End: Complemental strand, 34589785 - 34589732
Alignment:
Q  384 gacacagacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    ||||| ||||| ||||||||||||||| ||| ||||||| ||||| ||||||||    
T  34589785 gacacggacacggacacattgacaccgataacaatttgagaaaatgacataatt 34589732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 437
Target Start/End: Complemental strand, 20521931 - 20521875
Alignment:
Q  381 cacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    |||||||| ||||| |||||   || |||| ||||||||||||||||||||||||||    
T  20521931 cacgacacggacactgacacgccgataccgataataatttgataaaatcacataatt 20521875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 437
Target Start/End: Original strand, 21616739 - 21616795
Alignment:
Q  381 cacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    |||||||| ||||| |||||   ||||||||||||||||||| ||||||||||||||    
T  21616739 cacgacacggacacggacacgccgacaccgctaataatttgagaaaatcacataatt 21616795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 434
Target Start/End: Complemental strand, 29970622 - 29970578
Alignment:
Q  390 gacaccgacacattgacaccgctaataatttgataaaatcacata 434  Q
    ||||| ||||||||||||||||||||||||||| |||||| ||||    
T  29970622 gacactgacacattgacaccgctaataatttgagaaaatcgcata 29970578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 437
Target Start/End: Complemental strand, 30404952 - 30404876
Alignment:
Q  361 ctatgaagcacggagacggccacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    |||||||||||||| |||| || ||||| ||||| |||||   ||||| | ||||||||||| ||||||||||||||    
T  30404952 ctatgaagcacggatacggacatgacacggacactgacacgccgacacggttaataatttgaaaaaatcacataatt 30404876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 438
Target Start/End: Complemental strand, 20539756 - 20539699
Alignment:
Q  381 cacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataattt 438  Q
    |||||||| ||||| ||||| | ||||| ||||||||||||| ||||||| |||||||    
T  20539756 cacgacacggacactgacacgtcgacacagctaataatttgaaaaaatcatataattt 20539699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 437
Target Start/End: Original strand, 23718006 - 23718059
Alignment:
Q  384 gacacagacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    ||||| ||||| ||||||  ||||||||||||||||||| ||| ||||||||||    
T  23718006 gacacggacactgacacaccgacaccgctaataatttgagaaagtcacataatt 23718059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 437
Target Start/End: Original strand, 24105678 - 24105731
Alignment:
Q  384 gacacagacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    ||||| ||||| ||||||  ||||||||||||||||||| ||| ||||||||||    
T  24105678 gacacggacactgacacaccgacaccgctaataatttgagaaagtcacataatt 24105731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 437
Target Start/End: Original strand, 28677909 - 28677942
Alignment:
Q  404 gacaccgctaataatttgataaaatcacataatt 437  Q
    ||||||||||||||||||| ||||||||||||||    
T  28677909 gacaccgctaataatttgaaaaaatcacataatt 28677942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 437
Target Start/End: Complemental strand, 37411303 - 37411270
Alignment:
Q  404 gacaccgctaataatttgataaaatcacataatt 437  Q
    ||||||||||||||||||| ||||||||||||||    
T  37411303 gacaccgctaataatttgagaaaatcacataatt 37411270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 437
Target Start/End: Complemental strand, 12941017 - 12940961
Alignment:
Q  381 cacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    |||||||| ||||| ||||| |||||||  |||||||||||| ||||||| ||||||    
T  12941017 cacgacacggacactgacacgttgacacaactaataatttgaaaaaatcatataatt 12940961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 437
Target Start/End: Complemental strand, 18841115 - 18841039
Alignment:
Q  361 ctatgaagcacggagacggccacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    |||||||||||| | |||| |||||||  ||||| |||||  ||||||  |||||||||||| ||||| ||||||||    
T  18841115 ctatgaagcacgtatacggacacgacatggacactgacacgctgacacaactaataatttgaaaaaattacataatt 18841039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 437
Target Start/End: Complemental strand, 21782900 - 21782844
Alignment:
Q  381 cacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    ||||||||| |||| |||||   ||||| ||||||||||||| ||||||||||||||    
T  21782900 cacgacacaaacactgacacgccgacactgctaataatttgagaaaatcacataatt 21782844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 437
Target Start/End: Complemental strand, 27286394 - 27286318
Alignment:
Q  361 ctatgaagcacggagacggccacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    |||||||||||||| || | ||||| || ||||| || ||   |||| ||||||||||||||||| |||||||||||    
T  27286394 ctatgaagcacggacacagacacgatacggacactgatacgccgacaacgctaataatttgataagatcacataatt 27286318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 405 - 437
Target Start/End: Original strand, 28412351 - 28412383
Alignment:
Q  405 acaccgctaataatttgataaaatcacataatt 437  Q
    |||||| ||||||||||||||||||||||||||    
T  28412351 acaccgttaataatttgataaaatcacataatt 28412383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1528 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1528
Description:

Target: scaffold1528; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 437
Target Start/End: Original strand, 1013 - 1068
Alignment:
Q  382 acgacacagacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    ||||||||||| | ||||||  ||||||||||||||||||| ||||| ||||||||    
T  1013 acgacacagacgctgacacaccgacaccgctaataatttgaaaaaattacataatt 1068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 438
Target Start/End: Original strand, 241550 - 241628
Alignment:
Q  361 ctatgaagcacggagac-ggccacgacacagacaccgacacattgacaccgctaataatttgataaaatcacataattt 438  Q
    |||||||||||||| || || |||||||| ||||| |||||   ||||| ||||||||||||  |||||||||||||||    
T  241550 ctatgaagcacggacaccggacacgacacggacactgacacgccgacacagctaataatttggaaaaatcacataattt 241628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 437
Target Start/End: Original strand, 26373 - 26426
Alignment:
Q  384 gacacagacaccgacacattgacaccgctaataatttgataaaatcacataatt 437  Q
    ||||||||||  ||||| | |||||| |||||||||||| ||||||||||||||    
T  26373 gacacagacagtgacacgtcgacaccactaataatttgagaaaatcacataatt 26426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University