View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_33 (Length: 446)
Name: NF3772_low_33
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 18 - 434
Target Start/End: Original strand, 40058211 - 40058626
Alignment:
| Q |
18 |
catataggggacacaaccaaaaactctcatatttttaaggtttggagcatgaccaaacacatctcttctaggtgtcttcataccaaatttagtgtaagtg |
117 |
Q |
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| T |
40058211 |
catataggggacacaaccaaaaactctcatatttttaaggtttggagcatgaccaaccacatctcttctag-tgtcttcataccaaatttagtgtaagtg |
40058309 |
T |
|
| Q |
118 |
aatctattcatgaaataagaaaaaattattacactgtttcttcccaaaaaagagtagagttattagcatttgacatcaaacatataaatatctccatgat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40058310 |
aatctattcatgaaataagaaaaaattattacactgtttcatcccaaaaaagagtagagttattagcatttgacatcaaacatataaatctctccatgat |
40058409 |
T |
|
| Q |
218 |
ttttctgtccatcctctagtgatcaagaccattttcccgaggagttcctctaatttgtttatgcctaactattccactatccttgcaaatttgattaaac |
317 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40058410 |
ttttctgtccatcctctagtgatcaagacaattttcccgaggagttcctctaatttgtttatgcctaactattccactatccttgcaaatttgattaaac |
40058509 |
T |
|
| Q |
318 |
tctccagcataagaaataccttgcttcaactatgaaagaaactcttcttttcccaaatatacaatgttcaaaaaattcaagatcttcaatgttgtccttc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40058510 |
tctccagcataagaaataccttgcttcaactatgaaagaaactcttcttttcccaaatatacaatgttcaaaaaattcaagatcttcaatgttgtccttc |
40058609 |
T |
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| Q |
418 |
ctgaagagcctttgctt |
434 |
Q |
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||||||||||||||||| |
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| T |
40058610 |
ctgaagagcctttgctt |
40058626 |
T |
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