View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_34 (Length: 445)
Name: NF3772_low_34
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_34 |
 | |
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| [»] scaffold0112 (1 HSPs) |
| | |
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| [»] scaffold0093 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Complemental strand, 7643449 - 7643021
Alignment:
| Q |
1 |
gaggatatgaccaacttttatactttatttcctgttttaattgtgggatttgttatgctagttaacgataattaataggtattcatttttatctttcttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
7643449 |
gaggatatgaccaacttttatactttattttctgttttaattgtgggatttgttatactagttaacgataactaataggtatccatttttatctttcttt |
7643350 |
T |
|
| Q |
101 |
aatgaaggtccttaataggttgatgatcttgttaagtaaaggacttccccattggaattgctcttagcctcttatatattattcaagataaggaagtgca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7643349 |
aatgaaggtccttaataggttgatgatcttgttaagtaaaggacttccccattggaattgctcttagcctcttatatattattcaagataaggaagtgca |
7643250 |
T |
|
| Q |
201 |
atgtcccataaattgtgtgagttgtggtggtctgcataagaagcttgctcatatttgtttcgagtgtcattttactatgaaggtttggcatatgattggt |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7643249 |
atgtcccataaattgtgtgagttgtggtggtctgcataagaagcttgctcatatttgtttcgagtgtcattttactatgaaggtttggcatatgattggt |
7643150 |
T |
|
| Q |
301 |
ctttggaatgtggttcatgaggcattttttgaaaataattcagcagttgatgccattttcaaatcgttgcatcagctctcgcgagaatttggtcaatgat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7643149 |
ctttggaatgtggttcatgaggcattttttgaaaataattcagcagttgatgccattttcaaatcgttgcatcagctctcgcgagaatttggtcaatgat |
7643050 |
T |
|
| Q |
401 |
ttgcagctgtcctctcgagcctttggaag |
429 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
7643049 |
ttgcagctgtcctctcgagcctttggaag |
7643021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 244 - 425
Target Start/End: Original strand, 20250718 - 20250899
Alignment:
| Q |
244 |
cttgctcatatttgtttcgagtgtcattttactatgaaggtttggcatatgattggtctttggaatgtggttcatgaggcattttttgaaaataattcag |
343 |
Q |
| |
|
||||| ||||||||||| ||||||| ||||||| || ||||||||| || |||||| |||||||||||||||||||||| ||| | |||| ||||||| |
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|
| T |
20250718 |
cttgcacatatttgttttgagtgtccttttactgtgcaggtttggcgtaagattggcctttggaatgtggttcatgaggtgtttctcaaaaagaattcag |
20250817 |
T |
|
| Q |
344 |
cagttgatgccattttcaaatcgttgcatcagctctcgcgagaatttggtcaatgatttgcagctgtcctctcgagcctttg |
425 |
Q |
| |
|
||||||||||||||||| ||| | | |||||||| |||| |||| |||||||| ||||||||||| ||| | ||||||||| |
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|
| T |
20250818 |
cagttgatgccattttcgaattgctacatcagctttcgcaagaacttggtcaacgatttgcagctaccctttggagcctttg |
20250899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 7e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 182 - 429
Target Start/End: Original strand, 26131055 - 26131301
Alignment:
| Q |
182 |
ttcaagataaggaagtgcaatgtcccataaattgtgtgagttgtggtggtctgcataagaagcttgctcatatttgtttcgagtgtcattttactatgaa |
281 |
Q |
| |
|
|||||||||| | |||||||||||||| || |||||||||||||||||| |||||| || | |||| ||||||||||| ||||||| ||||| | || | |
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|
| T |
26131055 |
ttcaagataaaggagtgcaatgtcccacaagttgtgtgagttgtggtggcctgcatgaggaccttgtacatatttgttttgagtgtccttttaatttgca |
26131154 |
T |
|
| Q |
282 |
ggtttggcatatgattggtctttggaatgtggttcatgaggcattt-tttgaaaataattcagcagttgatgccattttcaaatcgttgcatcagctctc |
380 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||| ||| || |||| |||||| | |||||||||||||| ||| ||| ||||||||||| |
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| T |
26131155 |
ggtttggcatatgattggcctttggaatgcggttcatgaggtgtttcttaaaaaagaattca--aattgatgccattttcgaattgttacatcagctctc |
26131252 |
T |
|
| Q |
381 |
gcgagaatttggtcaatgatttgcagctgtcctctcgagcctttggaag |
429 |
Q |
| |
|
|| |||| |||||||| |||||||||||||||| | ||||||||||||| |
|
|
| T |
26131253 |
gcaagaacttggtcaacgatttgcagctgtcctttggagcctttggaag |
26131301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 182 - 426
Target Start/End: Complemental strand, 43218963 - 43218719
Alignment:
| Q |
182 |
ttcaagataaggaagtgcaatgtcccataaattgtgtgagttgtggtggtctgcataagaagcttgctcatatttgtttcgagtgtcattttactatgaa |
281 |
Q |
| |
|
|||||||||| | | |||||||||||| || ||||||||||||| || | |||||| || | ||||| ||||||||||| ||||||| ||||||| || | |
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|
| T |
43218963 |
ttcaagataaaggattgcaatgtcccacaagttgtgtgagttgttgttgcctgcatgaggaccttgcacatatttgttttgagtgtccttttactgtgca |
43218864 |
T |
|
| Q |
282 |
ggtttggcatatgattggtctttggaatgtggttcatgaggcattttttgaaaataattcagcagttgatgccattttcaaatcgttgcatcagctctcg |
381 |
Q |
| |
|
|||||||| || |||||| |||||||||||||||||||||| ||| | ||||| |||||||||||||||||||||||| ||| | | |||||||||||| |
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|
| T |
43218863 |
ggtttggcgtaagattggcctttggaatgtggttcatgaggtgtttctcgaaaagaattcagcagttgatgccattttcgaattgctacatcagctctcg |
43218764 |
T |
|
| Q |
382 |
cgagaatttggtcaatgatttgcagctgtcctctcgagcctttgg |
426 |
Q |
| |
|
| |||| |||||||| ||||||||||| ||| | |||||||||| |
|
|
| T |
43218763 |
caagaacttggtcaacgatttgcagctaccctttggagcctttgg |
43218719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: scaffold0112
Description:
Target: scaffold0112; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 182 - 429
Target Start/End: Original strand, 33756 - 34003
Alignment:
| Q |
182 |
ttcaagataaggaagtgcaatgtcccataaattgtgtgagttgtggtggtctgcataagaagcttgctcatatttgtttcgagtgtcattttactatgaa |
281 |
Q |
| |
|
|||||||||| |||| |||||||||||| || |||||||| || ||||| ||| || | ||||||||||||||||| || |||| ||||||| || | |
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|
| T |
33756 |
ttcaagataaaagagtgtaatgtcccataagttttgtgagttatgctggtccacatgaggaccttgctcatatttgtttagaatgtccttttactgtgca |
33855 |
T |
|
| Q |
282 |
ggtttggcatatgattggtctttggaatgtggttcatgaggcattttttgaaaataattcagcagttgatgccattttcaaatcgttgcatcagctctcg |
381 |
Q |
| |
|
|||||||| || | |||||||||||| |||||||||| | ||| ||||||| |||| ||||| ||||||||| ||| ||| | | ||||| || || |
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|
| T |
33856 |
ggtttggcgtacaaccggtctttggaatatggttcatgatgtgtttcttgaaaagaatttagcagctgatgccatattcgaattgctacatcaactttca |
33955 |
T |
|
| Q |
382 |
cgagaatttggtcaatgatttgcagctgtcctctcgagcctttggaag |
429 |
Q |
| |
|
| ||||||| ||||| |||||||| |||||| | ||||||||||||| |
|
|
| T |
33956 |
caagaatttagtcaacgatttgcaattgtcctatggagcctttggaag |
34003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 182 - 429
Target Start/End: Original strand, 8789655 - 8789901
Alignment:
| Q |
182 |
ttcaagataaggaagtgcaatgtcccataaattgtgtgagttgtggtggtctgcataagaagcttgctcatatttgtttcgagtgtcattttactatgaa |
281 |
Q |
| |
|
|||||||||| | ||||||||||||||||| ||||||||| |||| ||||| ||| || | |||||||||||||||||| | |||| ||||||| || | |
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|
| T |
8789655 |
ttcaagataaaggagtgcaatgtcccataagttgtgtgagctgtgatggtccacatgaggaccttgctcatatttgtttcaaatgtccttttactgtgca |
8789754 |
T |
|
| Q |
282 |
ggtttggcatatgattggtctttggaatgtggttcatgaggcattttttgaaaataattcagcagttgatgccattttcaaatcgttgcatcagctctcg |
381 |
Q |
| |
|
|||||||| || | | |||||||||| ||||||||||| ||| ||||||| |||||| | | ||||||||| ||| ||| | | ||||| || || |
|
|
| T |
8789755 |
ggtttggcgtacaaccgatctttggaatacggttcatgaggtgtttcttgaaaagaattcaaccgctgatgccatattcgaattgctacatcaactttca |
8789854 |
T |
|
| Q |
382 |
cgagaatttggtcaatgatttgcagctgtcctctcgagcctttggaag |
429 |
Q |
| |
|
| | || || ||||| |||||||| ||||||| | || |||||||||| |
|
|
| T |
8789855 |
c-aaaaattagtcaacgatttgcaactgtcctatggatcctttggaag |
8789901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 222 - 423
Target Start/End: Original strand, 15617433 - 15617641
Alignment:
| Q |
222 |
ttgtggtggtctgcataagaagcttgctcatatttgtttcga-------gtgtcattttactatgaaggtttggcatatgattggtctttggaatgtggt |
314 |
Q |
| |
|
|||||||||||| ||| || | |||||||||||||||||||| ||||| ||| |||||| ||||||||| || | | |||||||||||||||| |
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|
| T |
15617433 |
ttgtggtggtcttcatgaggatcttgctcatatttgtttcgaaattcgagtgtcctttaactatgcaggtttggcgtagggctcgtctttggaatgtggt |
15617532 |
T |
|
| Q |
315 |
tcatgaggcattttttgaaaataattcagcagttgatgccattttcaaatcgttgcatcagctctcgcgagaatttggtcaatgatttgcagctgtcctc |
414 |
Q |
| |
|
| | || || ||| | ||||| ||||||| |||||||||||| || ||| || ||| ||||||||| |||||||| ||| || |||||||| ||||| |
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|
| T |
15617533 |
taacgaagcgtttctcgaaaagaattcagtagttgatgccatctttgaattgtcacataagctctcgcaagaatttgaccaacgagttgcagctatcctc |
15617632 |
T |
|
| Q |
415 |
tcgagcctt |
423 |
Q |
| |
|
| ||||||| |
|
|
| T |
15617633 |
tagagcctt |
15617641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 429
Target Start/End: Complemental strand, 17183 - 16999
Alignment:
| Q |
245 |
ttgctcatatttgtttcgagtgtcattttactatgaaggtttggcatatgattggtctttggaatgtggttcatgaggcattttttgaaaataattcagc |
344 |
Q |
| |
|
|||||||||||||||| || |||| ||||||| || |||||||| || | || |||||||| |||||||||||| ||| ||||||| || | ||| |
|
|
| T |
17183 |
ttgctcatatttgtttagaatgtccttttactgtgcaggtttggtgtacaaccagtatttggaatatggttcatgaggtgtttcttgaaaagaaattagc |
17084 |
T |
|
| Q |
345 |
agttgatgccattttcaaatcgttgcatcagctctcgcgagaatttggtcaatgatttgcagctgtcctctcgagcctttggaag |
429 |
Q |
| |
|
|| ||||||||| ||||||| | | ||||| || || | ||||||| ||||| ||||||| |||||| | |||||||||||| |
|
|
| T |
17083 |
agctgatgccatattcaaattgctacatcaactttcacaagaatttagtcaacaatttgcaattgtcctatttagcctttggaag |
16999 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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