View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_35 (Length: 441)
Name: NF3772_low_35
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Complemental strand, 43989746 - 43989312
Alignment:
| Q |
1 |
gctggtagtgagtgacgtcgacccagatgatgaattcattgaacctgacaaaccaactcaactggtaaattacctgttgtttattagttcgagtcaaaac |
100 |
Q |
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| T |
43989746 |
gctggtagtgagtgacgtcgacccagatgatgaattcattgaacctgacaaaccaactcaactggtaaattacctgttgtttattagttcgagtcaaaac |
43989647 |
T |
|
| Q |
101 |
caaatccaaactgtcaagaaccaaaaacaataggttcaggtgacaannnnnnnctattgtaaatcgaccacccggtaaacaaacccaaggagacatgttt |
200 |
Q |
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| T |
43989646 |
caaatccaaactgtcaagaaccaaaaacaataggttcaggtgacaatttttttctattgtaaatcgactacccggtaaacaaacccaaggagacatgttt |
43989547 |
T |
|
| Q |
201 |
cttaaaagatacttcttatgtaagtaacccgtgtctcagcnnnnnnngaattcctcatgttttagagcccattgtcatattgtcctcggttgccttgttc |
300 |
Q |
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| T |
43989546 |
cttaaaagatacttcttatgtaagtaacccgtgtctcagcaaaaaaagaattcctcatgttttagagcccattgtcatattgtcctcggttgccttgttc |
43989447 |
T |
|
| Q |
301 |
tccttctttgacttacgatcatgtcgtcccacaccttttccttattcttcttctctgttcaattcgttctctttcgccactgtccatggtcactatgtct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43989446 |
tccttctttgacttacgatcatgtcgtcccacaccttttccttattcttcttctctgttcaattcgttctctttcgccactgtccatggtcactgtgtct |
43989347 |
T |
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| Q |
401 |
gcgccgtccactccttctttgtcgcttcatctctc |
435 |
Q |
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| T |
43989346 |
gcgccgtccactccttctttgtcgcttcttctctc |
43989312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 353
Target Start/End: Original strand, 43918528 - 43918590
Alignment:
| Q |
291 |
tgccttgttctccttctttgacttacgatcatgtcgtcccacaccttttccttattcttcttc |
353 |
Q |
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| T |
43918528 |
tgccttcttctcctccttcgacctacgatcatgtcgtcccatgccttctccttattcttcttc |
43918590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 145
Target Start/End: Complemental strand, 8831116 - 8831036
Alignment:
| Q |
65 |
gtaaattacctgttgtttattagttcgagtcaaaaccaaatccaaactgtcaagaaccaaaaacaataggttcaggtgaca |
145 |
Q |
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|||||| ||| |||||||||| ||||| |||||||||| || ||| |||||||||||||| ||||||||| || |||||| |
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| T |
8831116 |
gtaaatcacccgttgtttattggttcgggtcaaaaccagattgaaattgtcaagaaccaaacacaataggtacatgtgaca |
8831036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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