View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_40 (Length: 425)
Name: NF3772_low_40
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 9 - 415
Target Start/End: Original strand, 40513269 - 40513675
Alignment:
| Q |
9 |
agcagagactacttatcatatttgtatagtttagaggctaaattgaagagatagtagttagggtcctacatttaccgtttattctaatctaattggtgat |
108 |
Q |
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| T |
40513269 |
agcagagactacttatcatatttgtatagtttagaggctaaattgaagagatagtagttagggtcctacatttaccgtttattctaatctaattggtgat |
40513368 |
T |
|
| Q |
109 |
ttaactataaagtgaaatgtaataatgtattttgtgctttatccagatatcaagcagaatctggatctgaacttgggtatagctcctccttctaactctg |
208 |
Q |
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| T |
40513369 |
ttaactatgaagtgaaatgtaataatgtattttgtgctttatccagatatcaagcagaatctggatctgaacttgggtatagctcctccttctaactctg |
40513468 |
T |
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| Q |
209 |
atgttcaaatgatgaacatgcaccacaatggaagtggtttgcaagttcagcgtaactgggatgatatgcctgttgataagagtgtaatggtaaggttaaa |
308 |
Q |
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| T |
40513469 |
atgttcaaatgatgaacatgcaccacaatggaagtggtttgcaagttcagcgtaactgggatgatatgcctgttgataagagtgtaatggtaaggttaaa |
40513568 |
T |
|
| Q |
309 |
aaattaatcttttctatattaattctgcaattcctcatgcccctccgctctttcacatgaattcaaagtttgcatacttaacttgcatggtatattttta |
408 |
Q |
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| T |
40513569 |
aaattaatcttttctatattaattctgcaattcctcatgcccctccgctctttcacatgaattcaaagtttgcatacttaacttgcatggtatattttta |
40513668 |
T |
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| Q |
409 |
atctgtg |
415 |
Q |
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| T |
40513669 |
atctgtg |
40513675 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 32708737 - 32708695
Alignment:
| Q |
12 |
agagactacttatcatatttgtatagtttagaggctaaattga |
54 |
Q |
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| T |
32708737 |
agagactagttattatatttgtatagtttagagactaaattga |
32708695 |
T |
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