View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_41 (Length: 422)
Name: NF3772_low_41
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 413
Target Start/End: Original strand, 32065460 - 32065855
Alignment:
| Q |
18 |
cttcccctcctacaacactccctacatctgcaggatttccccatactgtactgcctccagcactcacaatttcctgaatatttttcaaattcaacaataa |
117 |
Q |
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| T |
32065460 |
cttcccctcctacaacactccctacatctgcaggatttccccatactgtactgcctccagcactcacaatttcctgaatatttttcaaattcaacaataa |
32065559 |
T |
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| Q |
118 |
attaaaccttgatgtaataatgatgatttgtaatttcacaatattgtttcaatgcaaatagcagtgtactgtagtgaaaagaacaattctttcggaatga |
217 |
Q |
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| T |
32065560 |
attaaaccttgatgtaataatgatgatctgtaatttcacaatattgtttcaatgcaaatagcagtgtactgtagtgaaaagaaaaattctttcggaatga |
32065659 |
T |
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| Q |
218 |
gtgtgagaatgagataaagatcattaactgagaatctgttaaaaggaggtttcttcatcttatctgagctttcatcaccaacagtgagaatggtgacaga |
317 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32065660 |
gtttgagaatgagataaagatcattaactgagaatctgttaaaaggaggtttcttcatcttatctgagctttcatcaccaacagtgagaatggtgacaga |
32065759 |
T |
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| Q |
318 |
gtgtccagcaccaagtagctcttttgcaaagtagaagccaatcacagcatgtccaccactattggtatttatgattagcaccttcttcttctctgc |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32065760 |
gtgtccagcaccaagtagctcttttgcaaagtagaagccaatcacagcatgtccaccactattggtatttatgattagcaccttcttcttctctgc |
32065855 |
T |
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