View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_44 (Length: 407)
Name: NF3772_low_44
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 162 - 387
Target Start/End: Complemental strand, 29711554 - 29711329
Alignment:
| Q |
162 |
taaatatgaataattgattagccatgcaatattgaacacgtgcatattcatatcctcacaaagatttactaaaaaatgagattaagatattggcaaatca |
261 |
Q |
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| T |
29711554 |
taaatatgaataattgattagccatgcaatattgaacacgtgcatattcatattctcactgagatttgctaaaaaatgagattaagatattggcaaatca |
29711455 |
T |
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| Q |
262 |
taggatttgctaacttgcacaccactcatttttatataagttcatgaattgcaccacatgatgtatatatttcacaaatttgcagccatataatattctt |
361 |
Q |
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| T |
29711454 |
taggatttgctaacttgcacaccactcatttttatataagttcatgaattgcacctcatgatgtatatatttcacaaatttgcagccatataatattctt |
29711355 |
T |
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| Q |
362 |
ttaacaatgatatttgttttggaccg |
387 |
Q |
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| T |
29711354 |
ttaacaatgatgtttgttttggaccg |
29711329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 29712241 - 29712161
Alignment:
| Q |
48 |
atctctggcattataaaaacatgtttaccttgtaccttttttcttaaagacgtataaattcaagccctataattttatctt |
128 |
Q |
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| T |
29712241 |
atctctggtattataaagacatgtttaccttgtaccttttttcttaaagacgtttaaattcaagccctataattttatctt |
29712161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 151
Target Start/End: Complemental strand, 29711971 - 29711941
Alignment:
| Q |
121 |
tttatctttagtgttctttgatgagggtatc |
151 |
Q |
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| T |
29711971 |
tttatctttagtgttctttgatgagggtatc |
29711941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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