View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3772_low_45 (Length: 406)

Name: NF3772_low_45
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3772_low_45
NF3772_low_45
[»] scaffold0002 (2 HSPs)
scaffold0002 (140-390)||(453600-453848)
scaffold0002 (1-83)||(453905-453987)
[»] chr3 (24 HSPs)
chr3 (212-380)||(44094391-44094556)
chr3 (1-83)||(36734714-36734796)
chr3 (1-80)||(31794044-31794123)
chr3 (1-60)||(21488084-21488143)
chr3 (16-83)||(51202291-51202358)
chr3 (1-83)||(29503432-29503514)
chr3 (1-83)||(37169201-37169283)
chr3 (18-83)||(17237775-17237840)
chr3 (16-81)||(51487060-51487125)
chr3 (8-60)||(42719510-42719562)
chr3 (1-76)||(4396388-4396463)
chr3 (16-83)||(49552261-49552328)
chr3 (16-74)||(22803001-22803059)
chr3 (16-81)||(7546564-7546629)
chr3 (16-81)||(12947343-12947408)
chr3 (16-81)||(27706299-27706364)
chr3 (156-193)||(47143356-47143393)
chr3 (24-81)||(47980708-47980765)
chr3 (24-81)||(47989995-47990052)
chr3 (24-81)||(47999282-47999339)
chr3 (24-81)||(48008569-48008626)
chr3 (143-188)||(53739485-53739530)
chr3 (14-50)||(24396549-24396585)
chr3 (1-77)||(46934618-46934694)
[»] chr6 (17 HSPs)
chr6 (1-83)||(33543642-33543724)
chr6 (1-83)||(25337543-25337625)
chr6 (20-83)||(10228652-10228715)
chr6 (1-52)||(26588526-26588577)
chr6 (16-83)||(34489223-34489290)
chr6 (16-83)||(8196444-8196511)
chr6 (16-79)||(28635158-28635221)
chr6 (1-83)||(16419131-16419213)
chr6 (15-57)||(22571454-22571496)
chr6 (1-83)||(35001563-35001645)
chr6 (3-52)||(528406-528455)
chr6 (16-77)||(8028155-8028216)
chr6 (16-77)||(23947355-23947416)
chr6 (14-78)||(7027812-7027876)
chr6 (14-50)||(7881137-7881173)
chr6 (14-78)||(12652922-12652986)
chr6 (157-193)||(20565949-20565985)
[»] chr1 (21 HSPs)
chr1 (1-83)||(39927576-39927658)
chr1 (1-83)||(18569332-18569414)
chr1 (1-83)||(48365787-48365869)
chr1 (1-83)||(39987366-39987448)
chr1 (143-188)||(29070659-29070704)
chr1 (16-83)||(28035116-28035183)
chr1 (1-83)||(3871385-3871467)
chr1 (8-50)||(35584647-35584689)
chr1 (16-78)||(45426103-45426165)
chr1 (2-83)||(7342699-7342780)
chr1 (15-52)||(12635157-12635194)
chr1 (16-81)||(16161792-16161857)
chr1 (14-83)||(19723310-19723379)
chr1 (14-83)||(33291453-33291522)
chr1 (143-191)||(31634445-31634493)
chr1 (1-49)||(31692520-31692568)
chr1 (16-52)||(34413163-34413199)
chr1 (16-60)||(40881049-40881093)
chr1 (152-188)||(47011306-47011342)
chr1 (16-52)||(49626901-49626937)
chr1 (153-193)||(52253575-52253615)
[»] chr7 (13 HSPs)
chr7 (3-83)||(17611098-17611178)
chr7 (16-79)||(6001998-6002061)
chr7 (4-83)||(32521952-32522031)
chr7 (8-83)||(42408335-42408410)
chr7 (1-83)||(969501-969583)
chr7 (8-83)||(26583687-26583762)
chr7 (8-75)||(46339035-46339102)
chr7 (1-83)||(22927892-22927974)
chr7 (143-188)||(28003231-28003276)
chr7 (16-81)||(28476180-28476245)
chr7 (143-188)||(32549874-32549919)
chr7 (16-52)||(22742926-22742962)
chr7 (16-52)||(24350910-24350946)
[»] chr5 (25 HSPs)
chr5 (3-83)||(42886453-42886533)
chr5 (1-83)||(28235560-28235642)
chr5 (3-52)||(38111004-38111053)
chr5 (4-52)||(1582148-1582196)
chr5 (4-52)||(1602619-1602667)
chr5 (1-77)||(30298189-30298265)
chr5 (157-188)||(31911339-31911370)
chr5 (16-83)||(34881693-34881760)
chr5 (1-60)||(36344513-36344572)
chr5 (16-83)||(41184477-41184544)
chr5 (1-83)||(7613080-7613162)
chr5 (1-83)||(27576372-27576454)
chr5 (16-77)||(2057875-2057936)
chr5 (3-52)||(10332604-10332653)
chr5 (14-83)||(11767784-11767853)
chr5 (16-81)||(19103540-19103605)
chr5 (143-188)||(21152630-21152675)
chr5 (143-188)||(21159765-21159810)
chr5 (143-188)||(21163572-21163617)
chr5 (143-188)||(24089095-24089140)
chr5 (152-188)||(6279452-6279488)
chr5 (16-52)||(8088280-8088316)
chr5 (34-82)||(11192343-11192391)
chr5 (16-52)||(14211206-14211242)
chr5 (16-52)||(28540979-28541015)
[»] chr4 (28 HSPs)
chr4 (1-83)||(2624483-2624563)
chr4 (3-77)||(18138937-18139011)
chr4 (1-83)||(35261176-35261258)
chr4 (3-77)||(49126150-49126224)
chr4 (1-83)||(3336178-3336261)
chr4 (1-83)||(46991152-46991234)
chr4 (1-77)||(10389776-10389852)
chr4 (16-83)||(9528914-9528981)
chr4 (1-83)||(868147-868229)
chr4 (14-60)||(9645584-9645630)
chr4 (13-83)||(32952783-32952852)
chr4 (16-81)||(35965012-35965077)
chr4 (5-81)||(52204389-52204465)
chr4 (16-83)||(4643843-4643910)
chr4 (16-83)||(8009398-8009465)
chr4 (1-76)||(18048863-18048938)
chr4 (16-83)||(25273868-25273935)
chr4 (8-83)||(31381701-31381776)
chr4 (1-83)||(56194586-56194668)
chr4 (16-81)||(22300824-22300889)
chr4 (2-83)||(27593850-27593931)
chr4 (9-50)||(43444411-43444452)
chr4 (144-188)||(3435192-3435236)
chr4 (3-83)||(6972795-6972875)
chr4 (16-52)||(9643392-9643428)
chr4 (161-193)||(31262631-31262663)
chr4 (16-52)||(36194709-36194745)
chr4 (16-52)||(47320460-47320496)
[»] chr2 (19 HSPs)
chr2 (1-83)||(459296-459378)
chr2 (8-83)||(4228110-4228185)
chr2 (4-83)||(9374581-9374660)
chr2 (1-83)||(17319299-17319380)
chr2 (8-83)||(9986371-9986446)
chr2 (1-83)||(37614147-37614230)
chr2 (8-78)||(7015740-7015810)
chr2 (14-83)||(2808507-2808576)
chr2 (16-83)||(8805843-8805910)
chr2 (1-52)||(12647975-12648026)
chr2 (8-83)||(32913218-32913293)
chr2 (16-78)||(20047119-20047181)
chr2 (8-50)||(30420688-30420730)
chr2 (1-83)||(41431005-41431087)
chr2 (16-81)||(3308906-3308971)
chr2 (143-188)||(4898207-4898252)
chr2 (143-188)||(4945601-4945646)
chr2 (143-191)||(9709697-9709745)
chr2 (14-78)||(34598969-34599033)
[»] chr8 (16 HSPs)
chr8 (8-83)||(43192375-43192450)
chr8 (1-83)||(35580437-35580519)
chr8 (2-83)||(15046874-15046955)
chr8 (1-77)||(11196875-11196951)
chr8 (17-76)||(28239820-28239879)
chr8 (8-77)||(32724510-32724579)
chr8 (14-83)||(34611784-34611853)
chr8 (143-188)||(43295941-43295986)
chr8 (5-76)||(5333391-5333462)
chr8 (16-83)||(39153179-39153246)
chr8 (1-60)||(44099956-44100015)
chr8 (8-50)||(4808977-4809019)
chr8 (16-50)||(14906960-14906994)
chr8 (5-83)||(15597193-15597271)
chr8 (16-52)||(41896499-41896535)
chr8 (164-192)||(45407058-45407086)
[»] scaffold0495 (1 HSPs)
scaffold0495 (20-83)||(5371-5434)
[»] scaffold0146 (1 HSPs)
scaffold0146 (18-83)||(16359-16424)
[»] scaffold0003 (1 HSPs)
scaffold0003 (7-78)||(361827-361898)
[»] scaffold0347 (1 HSPs)
scaffold0347 (16-78)||(5988-6050)
[»] scaffold0172 (1 HSPs)
scaffold0172 (143-188)||(11637-11682)
[»] scaffold1266 (1 HSPs)
scaffold1266 (156-188)||(196-228)


Alignment Details
Target: scaffold0002 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 140 - 390
Target Start/End: Complemental strand, 453848 - 453600
Alignment:
Q  140 gaagatgaatgaggtccatattatagatcacatacatcatttattgaattaataacttttacttaattatagtatgatagggatgaaacaaaaagggaaa 239  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  453848 gaagatgaatgaggtccatattatagatcacatacattatttattgaattaatagcttttagttaattatagtatgatagggatgaaacaaaaagggaaa 453749  T
Q  240 ttgatctaagaatgaacaagggaaaaaagccaagagttgagaaagaaacatcaccttcaattccactcagaattctgataagcatggagctggtgaatat 339  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  453748 ttgatctaaaaatgaacaagggaaaaaagccaagagttgagaaagaaacatcaccttcaattccactcagaattctgataagcatggagctggtga--at 453651  T
Q  340 atgcatgtgttaaaaactgtttaaaggtcaaatgactgtgaatgcattaac 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  453650 atgcatgtgttaaaaactgtttaaaggtcaaatgactgtgaatgcattaac 453600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 453987 - 453905
Alignment:
Q  1 ccgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  453987 ccgcaacaagactgaaaatcaaacaacgccgcccaagacgacgaacaacacaccatcacaatcaaataacgaaatcacgaaga 453905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 212 - 380
Target Start/End: Original strand, 44094391 - 44094556
Alignment:
Q  212 tatgatagggatgaaacaaaaagggaaattgatctaagaatgaacaagggaaaaaagccaagagttgagaaagaaacatcaccttcaattccactcagaa 311  Q
    ||||||||||||||| ||| ||||||||||| ||||| || |||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  44094391 tatgatagggatgaagcaataagggaaattggtctaaaaaggaacaagg-aaaaaaggcaagagttgagaaagaaacatcaccttgaattccactcagaa 44094489  T
Q  312 ttctgataagcatggagctggtgaatatatgcatgtgttaaaaactgtttaaaggtcaaatgactgtga 380  Q
    || ||||||||||||| |||||||   |||||||||||| ||||||||||  |||| |||||| |||||    
T  44094490 ttatgataagcatggacctggtga--gtatgcatgtgttgaaaactgtttgtaggtaaaatgagtgtga 44094556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 36734714 - 36734796
Alignment:
Q  1 ccgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| ||||||||||||||||| |   ||||||||||||||||||    
T  36734714 ccgcaataagacggaaaatcaaacaacgccgcacaagacgacgaacaacacaccatcacatttggatgacgaaatcacgaaga 36734796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 31794123 - 31794044
Alignment:
Q  1 ccgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacga 80  Q
    |||||||||||  ||||||||||||||||||| ||| ||||| ||||||||||||  ||| ||| ||||| |||||||||    
T  31794123 ccgcaacaagatagaaaatcaaacaacgccgcacaaaacgacgaacaacacaccactacactcagatgacaaaatcacga 31794044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 21488143 - 21488084
Alignment:
Q  1 ccgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcaca 60  Q
    |||||| ||||| | ||||||||||||||||| ||||||||||||||||| |||| ||||    
T  21488143 ccgcaagaagacgggaaatcaaacaacgccgcacaagacgacaaacaacataccaccaca 21488084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 51202291 - 51202358
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    ||||||||||||||||| ||||||||||||||||| |||| |||| | | |||| |||||||| ||||    
T  51202291 aaatcaaacaacgccgcacaagacgacaaacaacaaaccaccacacttagatgatgaaatcacaaaga 51202358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 29503514 - 29503432
Alignment:
Q  1 ccgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    |||||| ||||| |||||||||||| |||||| ||||||||| ||||||| |||| |||| | | |||| |||||||| ||||    
T  29503514 ccgcaagaagacggaaaatcaaacagcgccgcacaagacgacgaacaacaaaccaccacacttagatgatgaaatcacaaaga 29503432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 37169283 - 37169201
Alignment:
Q  1 ccgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    ||||||||| || |||||||||||||||| || |||||||||  |||||| ||||||||| ||   ||||||||||| |||||    
T  37169283 ccgcaacaatacggaaaatcaaacaacgctgcacaagacgacggacaacagaccatcacactcgggtgacgaaatcaagaaga 37169201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 17237840 - 17237775
Alignment:
Q  18 atcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    ||||||||||||||| ||||||||||||||||| |||| |||| | | |||| |||||||| ||||    
T  17237840 atcaaacaacgccgcacaagacgacaaacaacaaaccaccacacttagatgatgaaatcacaaaga 17237775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 51487125 - 51487060
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaa 81  Q
    ||||||||||||||||| ||||||||| ||||||||| | || || | | ||||||||||||||||    
T  51487125 aaatcaaacaacgccgcacaagacgacgaacaacacaacgtcccactaagatgacgaaatcacgaa 51487060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 42719562 - 42719510
Alignment:
Q  8 aagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcaca 60  Q
    ||||| ||||||||||||||||||| ||||||||| ||||||| |||| ||||    
T  42719562 aagacggaaaatcaaacaacgccgcacaagacgacgaacaacaaaccaccaca 42719510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 4396388 - 4396463
Alignment:
Q  1 ccgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatc 76  Q
    |||||||||| |  |||||||||||||||| | ||||||||||||||||||| || | || ||  |||||||||||    
T  4396388 ccgcaacaaggcgcaaaatcaaacaacgccacacaagacgacaaacaacacaacaccgcattcggatgacgaaatc 4396463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 49552261 - 49552328
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    ||||||||||||||||| ||||||||| ||||||| |||| |||| | | |||| |||||||| ||||    
T  49552261 aaatcaaacaacgccgcacaagacgacgaacaacaaaccaccacatttagatgatgaaatcacaaaga 49552328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 22803059 - 22803001
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaa 74  Q
    |||||||||||||||||  |||||||| ||||||| |||  |||| |||||||||||||    
T  22803059 aaatcaaacaacgccgcataagacgacgaacaacaaaccgccacactcaaatgacgaaa 22803001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 7546629 - 7546564
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaa 81  Q
    ||||||||||||||||| ||||||||| ||||||||| | || || | | | ||||||||||||||    
T  7546629 aaatcaaacaacgccgcacaagacgacgaacaacacaacgtcgcactaagacgacgaaatcacgaa 7546564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 12947343 - 12947408
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaa 81  Q
    ||||||||||||||||| ||||||||| |||||||||    | || ||||| ||||||||||||||    
T  12947343 aaatcaaacaacgccgcacaagacgacgaacaacacaaagccgcactcaaacgacgaaatcacgaa 12947408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 27706299 - 27706364
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaa 81  Q
    |||| |||||||||||| ||||||||| ||||||||| | ||||| | | | ||||||||||||||    
T  27706299 aaattaaacaacgccgcacaagacgacgaacaacacaacgtcacactaagacgacgaaatcacgaa 27706364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 47143356 - 47143393
Alignment:
Q  156 catattatagatcacatacatcatttattgaattaata 193  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  47143356 catattatagatcacatacatcattaattgaataaata 47143393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 47980708 - 47980765
Alignment:
Q  24 caacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaa 81  Q
    |||||||||  |||||||  ||||||| |||| ||||||| |||||||||||||||||    
T  47980708 caacgccgcataagacgatgaacaacaaaccaccacaatcgaatgacgaaatcacgaa 47980765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 47989995 - 47990052
Alignment:
Q  24 caacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaa 81  Q
    |||||||||  |||||||  ||||||| |||| ||||||| |||||||||||||||||    
T  47989995 caacgccgcataagacgatgaacaacaaaccaccacaatcgaatgacgaaatcacgaa 47990052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 47999282 - 47999339
Alignment:
Q  24 caacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaa 81  Q
    |||||||||  |||||||  ||||||| |||| ||||||| |||||||||||||||||    
T  47999282 caacgccgcataagacgatgaacaacaaaccaccacaatcgaatgacgaaatcacgaa 47999339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 48008569 - 48008626
Alignment:
Q  24 caacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaa 81  Q
    |||||||||  |||||||  ||||||| |||| ||||||| |||||||||||||||||    
T  48008569 caacgccgcataagacgatgaacaacaaaccaccacaatcgaatgacgaaatcacgaa 48008626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 53739530 - 53739485
Alignment:
Q  143 gatgaatgaggtccatattatagatcacatacatcatttattgaat 188  Q
    |||| ||| ||||||||||||||| | |||||||||||||||||||    
T  53739530 gatgcatgtggtccatattatagaccgcatacatcatttattgaat 53739485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 24396549 - 24396585
Alignment:
Q  14 gaaaatcaaacaacgccgctcaagacgacaaacaaca 50  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  24396549 gaaaatcaaacaacgtcgcacaagacgacaaacaaca 24396585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 46934694 - 46934618
Alignment:
Q  1 ccgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatca 77  Q
    |||||| ||||| | |||||||||||| |||| ||||||||| ||||||| |||| |||| | | |||| |||||||    
T  46934694 ccgcaagaagacgggaaatcaaacaacaccgcacaagacgacgaacaacaaaccaccacacttagatgatgaaatca 46934618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 33543642 - 33543724
Alignment:
Q  1 ccgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    |||||||||||| ||||||||||||||||||| ||||||||| |||||||||||| || ||||| ||||||||||||||||||    
T  33543642 ccgcaacaagacagaaaatcaaacaacgccgcacaagacgacgaacaacacaccaccataatcagatgacgaaatcacgaaga 33543724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 25337625 - 25337543
Alignment:
Q  1 ccgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    ||||||||||||  ||||||||||||| |||| ||||||||| |||||||||||| |||| ||  ||||||||||||||||||    
T  25337625 ccgcaacaagacgaaaaatcaaacaacaccgcgcaagacgacgaacaacacaccaccacactcggatgacgaaatcacgaaga 25337543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 10228715 - 10228652
Alignment:
Q  20 caaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    ||||||||||||| ||||||||| ||||||| ||||||||| | |||||| |||||||| ||||    
T  10228715 caaacaacgccgcacaagacgacgaacaacaaaccatcacacttaaatgatgaaatcacaaaga 10228652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 26588526 - 26588577
Alignment:
Q  1 ccgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacaca 52  Q
    |||||||||||| | ||||||||||||||||| ||||||||||| |||||||    
T  26588526 ccgcaacaagacgggaaatcaaacaacgccgcacaagacgacaatcaacaca 26588577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 34489290 - 34489223
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    ||||||||||||| ||| ||||||||| |||||||||||| |||| ||  |||| |||||||||||||    
T  34489290 aaatcaaacaacgtcgcacaagacgacgaacaacacaccaccacactcggatgatgaaatcacgaaga 34489223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 8196444 - 8196511
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    ||||||||||||||||| ||||||||| ||||||| |||| |||| | | |||| |||||||| ||||    
T  8196444 aaatcaaacaacgccgcacaagacgacgaacaacaaaccaccacacttatatgatgaaatcacaaaga 8196511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 28635158 - 28635221
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacg 79  Q
    |||||||||||| |||  ||||||||| ||||||| |||  |||| ||||||||||||||||||    
T  28635158 aaatcaaacaacaccgtacaagacgacgaacaacaaaccgccacactcaaatgacgaaatcacg 28635221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 16419213 - 16419131
Alignment:
Q  1 ccgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    |||||| ||||| | ||| ||||||||||||| ||||||||| ||||||| |||| |||| | | |||| |||||||| ||||    
T  16419213 ccgcaagaagacgggaaagcaaacaacgccgcacaagacgacgaacaacaaaccaccacacttagatgatgaaatcacaaaga 16419131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 22571496 - 22571454
Alignment:
Q  15 aaaatcaaacaacgccgctcaagacgacaaacaacacaccatc 57  Q
    |||||||||||||||||| ||||||||| ||||||||| ||||    
T  22571496 aaaatcaaacaacgccgcacaagacgacgaacaacacaacatc 22571454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 35001645 - 35001563
Alignment:
Q  1 ccgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    |||||| ||||| | ||| ||||||||||||| ||||||||| ||||||| |||| |||| | | |||| |||||||| ||||    
T  35001645 ccgcaagaagacgggaaagcaaacaacgccgcacaagacgacgaacaacaaaccaccacacttagatgatgaaatcacaaaga 35001563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 528406 - 528455
Alignment:
Q  3 gcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacaca 52  Q
    ||||||||||  |||||||||||||||||| ||||| |||||| ||||||    
T  528406 gcaacaagacacaaaatcaaacaacgccgcacaagatgacaaataacaca 528455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 8028155 - 8028216
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatca 77  Q
    ||||||||||||||||| ||||||||| ||||||| |||| |||| | | |||| |||||||    
T  8028155 aaatcaaacaacgccgcacaagacgacgaacaacaaaccaccacacttagatgatgaaatca 8028216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 23947355 - 23947416
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatca 77  Q
    ||||||||||||||||| ||||||||| ||||||| |||| |||| | | |||| |||||||    
T  23947355 aaatcaaacaacgccgcacaagacgacgaacaacaaaccaccacacttagatgatgaaatca 23947416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 7027876 - 7027812
Alignment:
Q  14 gaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcac 78  Q
    |||||||||||||| |||  ||||||||| ||||||| |||| |||| | |||||| ||||||||    
T  7027876 gaaaatcaaacaactccgtacaagacgacgaacaacaaaccaccacacttaaatgatgaaatcac 7027812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 7881137 - 7881173
Alignment:
Q  14 gaaaatcaaacaacgccgctcaagacgacaaacaaca 50  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  7881137 gaaaatcaaacaacgccgcacaagacgacgaacaaca 7881173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 12652986 - 12652922
Alignment:
Q  14 gaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcac 78  Q
    ||||||||||||||||||| ||||||||  ||||||| |||| |||| | | |||| ||||||||    
T  12652986 gaaaatcaaacaacgccgcacaagacgatgaacaacaaaccaccacacttagatgatgaaatcac 12652922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 20565949 - 20565985
Alignment:
Q  157 atattatagatcacatacatcatttattgaattaata 193  Q
    |||||||| ||||||||||||||||||||||| ||||    
T  20565949 atattatatatcacatacatcatttattgaatgaata 20565985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 39927576 - 39927658
Alignment:
Q  1 ccgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    |||||||||||| | ||||||||||||||| | ||||||||| |||||||||||| |||| ||  ||||||||||||||||||    
T  39927576 ccgcaacaagacgggaaatcaaacaacgccacacaagacgacgaacaacacaccaccacactcggatgacgaaatcacgaaga 39927658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 18569332 - 18569414
Alignment:
Q  1 ccgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    |||||||||||| | ||||| |||||| |||  ||||| ||| |||||||||||| |||| ||||||||||||||||||||||    
T  18569332 ccgcaacaagacgggaaatctaacaacaccggacaagatgacgaacaacacaccaccacactcaaatgacgaaatcacgaaga 18569414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 48365787 - 48365869
Alignment:
Q  1 ccgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    |||| |||||||  ||||||||||||||  || ||||| ||| |||||||||||| |||| ||| ||||||||||||||||||    
T  48365787 ccgctacaagacaaaaaatcaaacaacgttgcacaagatgacgaacaacacaccaccacactcagatgacgaaatcacgaaga 48365869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 39987448 - 39987366
Alignment:
Q  1 ccgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    ||||| ||| || ||||||||||||||||||| ||||||||| ||||| |||||| |||| ||  |||  |||||||||||||    
T  39987448 ccgcagcaatacggaaaatcaaacaacgccgcacaagacgacgaacaatacaccaccacactcggatggtgaaatcacgaaga 39987366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 29070704 - 29070659
Alignment:
Q  143 gatgaatgaggtccatattatagatcacatacatcatttattgaat 188  Q
    |||| ||| ||||||||||||||| |||||||||||||||||||||    
T  29070704 gatgtatgtggtccatattatagaccacatacatcatttattgaat 29070659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 28035183 - 28035116
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    ||||||||||||||||| ||||||||| ||||||| |||| |||| | | |||| |||||||| ||||    
T  28035183 aaatcaaacaacgccgcacaagacgacgaacaacaaaccaccacacttagatgatgaaatcacaaaga 28035116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 3871467 - 3871385
Alignment:
Q  1 ccgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    |||||| ||||| | |||||||||||||| || ||||||||| ||||||| |||| |||| | | |||| |||||||| ||||    
T  3871467 ccgcaagaagacgggaaatcaaacaacgctgcacaagacgacgaacaacaaaccaccacacttagatgatgaaatcacaaaga 3871385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 35584647 - 35584689
Alignment:
Q  8 aagactgaaaatcaaacaacgccgctcaagacgacaaacaaca 50  Q
    ||||| ||||||||||||||||||| ||||||||| |||||||    
T  35584647 aagacggaaaatcaaacaacgccgcacaagacgacgaacaaca 35584689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 45426103 - 45426165
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcac 78  Q
    ||||||||||||||||| ||||||||| ||||||| |||| |||| | | |||| ||||||||    
T  45426103 aaatcaaacaacgccgcacaagacgacgaacaacaaaccaccacacttagatgatgaaatcac 45426165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 7342780 - 7342699
Alignment:
Q  2 cgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    ||||| ||||| | ||| ||||||||||||| ||||||||| ||||||| |||| |||| | | |||| |||||||| ||||    
T  7342780 cgcaagaagacgggaaaacaaacaacgccgcacaagacgacgaacaacaaaccaccacacttagatgatgaaatcacaaaga 7342699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 12635194 - 12635157
Alignment:
Q  15 aaaatcaaacaacgccgctcaagacgacaaacaacaca 52  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  12635194 aaaatcaaacaacgccgcacaagacgacgaacaacaca 12635157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 16161857 - 16161792
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaa 81  Q
    ||||||||||||||||| ||||||||| ||||||||| | || || | | | ||||||||||||||    
T  16161857 aaatcaaacaacgccgcacaagacgacgaacaacacaacgtcgcactaagacgacgaaatcacgaa 16161792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 19723379 - 19723310
Alignment:
Q  14 gaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    |||||||||||||||||||  |||||||| ||||||| |||| |||| | | |||| |||||||| ||||    
T  19723379 gaaaatcaaacaacgccgcagaagacgacgaacaacaaaccaccacacttagatgatgaaatcacaaaga 19723310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 33291453 - 33291522
Alignment:
Q  14 gaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    |||||||||||||| |||| ||||||||| ||||||| |||| |||| | | |||| |||||||| ||||    
T  33291453 gaaaatcaaacaacaccgcacaagacgacgaacaacaaaccaccacacttagatgatgaaatcacaaaga 33291522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 31634445 - 31634493
Alignment:
Q  143 gatgaatgaggtccatattatagatcacatacatcatttattgaattaa 191  Q
    |||| ||| ||||||||||||| |||||||||| |||| ||||||||||    
T  31634445 gatgtatgtggtccatattataaatcacatacaacattaattgaattaa 31634493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 31692520 - 31692568
Alignment:
Q  1 ccgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaac 49  Q
    |||||||||||   ||||||||||||| |||| ||||||||||||||||    
T  31692520 ccgcaacaagaagcaaaatcaaacaacaccgcacaagacgacaaacaac 31692568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 34413163 - 34413199
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacaca 52  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  34413163 aaatcaaacaacgccgcacaagacgacgaacaacaca 34413199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 40881049 - 40881093
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacacaccatcaca 60  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||    
T  40881049 aaatcaaacaacgccgcacaagacgacgaacaacaaaccaccaca 40881093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 47011306 - 47011342
Alignment:
Q  152 ggtccatattatagatcacatacatcatttattgaat 188  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  47011306 ggtccatattataaatcacatacatcattaattgaat 47011342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 49626937 - 49626901
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacaca 52  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  49626937 aaatcaaacaacgccgcacaagacgacgaacaacaca 49626901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 52253615 - 52253575
Alignment:
Q  153 gtccatattatagatcacatacatcatttattgaattaata 193  Q
    |||||||||||| ||||||||||||||| ||||||| ||||    
T  52253615 gtccatattataaatcacatacatcattaattgaatgaata 52253575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 17611178 - 17611098
Alignment:
Q  3 gcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    |||||||||| |||||||||||||| |||| ||||||||| || ||||||||| |||| ||  ||||||||||||||||||    
T  17611178 gcaacaagacagaaaatcaaacaactccgcacaagacgacgaataacacaccaccacactcggatgacgaaatcacgaaga 17611098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 6002061 - 6001998
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacg 79  Q
    ||||||||||||||||| ||||||||| ||||||| |||  |||| ||| ||||||||||||||    
T  6002061 aaatcaaacaacgccgcacaagacgacgaacaacaaaccgccacactcagatgacgaaatcacg 6001998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 32521952 - 32522031
Alignment:
Q  4 caacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    |||||| || ||||||||||||||||||| ||||| ||| |||||||||| | |||| ||| ||| |||||| |||||||    
T  32521952 caacaaaacggaaaatcaaacaacgccgcacaagatgacgaacaacacacaaccacactcagatggcgaaataacgaaga 32522031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 42408410 - 42408335
Alignment:
Q  8 aagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    ||||| |||||||||||||||| || ||||||||| ||||||| |||| |||| | |||||| |||||||| ||||    
T  42408410 aagacggaaaatcaaacaacgctgcacaagacgacgaacaacaaaccaccacacttaaatgatgaaatcacaaaga 42408335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 969501 - 969583
Alignment:
Q  1 ccgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    |||||| |||||  ||||||||||||||||||  |||||||| ||||||||| |  |||| ||||| || |||||||||||||    
T  969501 ccgcaataagacgcaaaatcaaacaacgccgcaaaagacgacgaacaacacaacgccacattcaaacgatgaaatcacgaaga 969583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 26583762 - 26583687
Alignment:
Q  8 aagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    ||||||| ||||||||||||||||| ||||||||  ||||||| |||| |||| | | |||| |||||||| ||||    
T  26583762 aagactggaaatcaaacaacgccgcacaagacgatgaacaacaaaccaccacacttagatgatgaaatcacaaaga 26583687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 46339102 - 46339035
Alignment:
Q  8 aagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaat 75  Q
    ||||| ||||||||||||||||||| ||||||||| ||||||| | || |||| | |||||| |||||    
T  46339102 aagacggaaaatcaaacaacgccgcacaagacgacgaacaacaaatcaccacacttaaatgatgaaat 46339035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 22927892 - 22927974
Alignment:
Q  1 ccgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    |||||| ||||| | ||| ||||||||||||| ||||||||| ||||||| |||| |||| | | |||| |||||||| ||||    
T  22927892 ccgcaagaagacgggaaagcaaacaacgccgcacaagacgacgaacaacaaaccaccacacttagatgatgaaatcacaaaga 22927974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 28003231 - 28003276
Alignment:
Q  143 gatgaatgaggtccatattatagatcacatacatcatttattgaat 188  Q
    |||| ||| ||||||||||||| ||||||||||||||| |||||||    
T  28003231 gatgtatgtggtccatattataaatcacatacatcattaattgaat 28003276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 28476245 - 28476180
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaa 81  Q
    ||||||||||||||||| ||||||||| ||||||||| | || || | | | ||||||||||||||    
T  28476245 aaatcaaacaacgccgcacaagacgacgaacaacacaacgtcgcactaagacgacgaaatcacgaa 28476180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 32549874 - 32549919
Alignment:
Q  143 gatgaatgaggtccatattatagatcacatacatcatttattgaat 188  Q
    |||| ||| |||| |||||| |||||||||||||||||||||||||    
T  32549874 gatgtatgtggtctatattaaagatcacatacatcatttattgaat 32549919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 22742962 - 22742926
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacaca 52  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  22742962 aaatcaaacaacgccgcacaagacgacgaacaacaca 22742926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 24350910 - 24350946
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacaca 52  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  24350910 aaatcaaacaacgccgcacaagacgacgaacaacaca 24350946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 42886533 - 42886453
Alignment:
Q  3 gcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    |||||||| | | ||||||||||||||||| ||||||||| |||||||||||| |||| ||| |||| |||||||||||||    
T  42886533 gcaacaaggcgggaaatcaaacaacgccgcacaagacgacgaacaacacaccaccacactcagatgatgaaatcacgaaga 42886453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 28235642 - 28235560
Alignment:
Q  1 ccgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    |||||| ||||  ||||||||||||||||||| |||||||||| |||||| ||||||||| | | |||| |||||||| ||||    
T  28235642 ccgcaagaagatggaaaatcaaacaacgccgcacaagacgacagacaacaaaccatcacacttagatgatgaaatcacaaaga 28235560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 38111004 - 38111053
Alignment:
Q  3 gcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacaca 52  Q
    ||||||||||  |||||||||||||||||| |||||| ||||||||||||    
T  38111004 gcaacaagacacaaaatcaaacaacgccgcacaagacaacaaacaacaca 38111053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 1582148 - 1582196
Alignment:
Q  4 caacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacaca 52  Q
    |||||||||  |||||||||||||||||| ||||||||||||| |||||    
T  1582148 caacaagacgaaaaatcaaacaacgccgcacaagacgacaaacgacaca 1582196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 1602667 - 1602619
Alignment:
Q  4 caacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacaca 52  Q
    |||||||||  |||||||||||||||||| ||||||||||||| |||||    
T  1602667 caacaagacgaaaaatcaaacaacgccgcacaagacgacaaacgacaca 1602619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 30298265 - 30298189
Alignment:
Q  1 ccgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatca 77  Q
    |||||| ||||| |||||||||||| |||||| ||||||||| ||||||| |||| |||| | | |||| |||||||    
T  30298265 ccgcaagaagacggaaaatcaaacagcgccgcacaagacgacgaacaacaaaccaccacacttagatgatgaaatca 30298189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 157 - 188
Target Start/End: Original strand, 31911339 - 31911370
Alignment:
Q  157 atattatagatcacatacatcatttattgaat 188  Q
    ||||||||||||||||||||||||||||||||    
T  31911339 atattatagatcacatacatcatttattgaat 31911370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 34881760 - 34881693
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    ||||||||||||||||| ||||||||| ||||||| |||| |||| | | |||| |||||||| ||||    
T  34881760 aaatcaaacaacgccgcacaagacgacgaacaacaaaccaccacacttagatgatgaaatcacaaaga 34881693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 36344513 - 36344572
Alignment:
Q  1 ccgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcaca 60  Q
    |||||| || || ||||||||||||||||||| ||||||||| ||||||| |||| ||||    
T  36344513 ccgcaaaaaaacggaaaatcaaacaacgccgcacaagacgacgaacaacaaaccaccaca 36344572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 41184477 - 41184544
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    ||||||||||||||||| ||||||||| ||||||| |||| |||| | | |||| |||||||| ||||    
T  41184477 aaatcaaacaacgccgcacaagacgacgaacaacaaaccaccacacttagatgatgaaatcacaaaga 41184544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 7613080 - 7613162
Alignment:
Q  1 ccgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    ||||||||||||   ||||||||||||   || ||||||||| |||||||||||| |||| ||| ||||| |||||| |||||    
T  7613080 ccgcaacaagacgagaaatcaaacaacattgcacaagacgacgaacaacacaccaccacactcagatgacaaaatcatgaaga 7613162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 27576372 - 27576454
Alignment:
Q  1 ccgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    |||||||||||| | ||||||||||||| ||| ||||  ||  ||||||| |||| |||| ||| ||||||||||||| ||||    
T  27576372 ccgcaacaagacgggaaatcaaacaacgtcgcacaagtagaagaacaacataccaccacactcatatgacgaaatcacaaaga 27576454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 2057875 - 2057936
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatca 77  Q
    ||||||||||||||||| ||||||||| ||||||| |||| |||| | | |||| |||||||    
T  2057875 aaatcaaacaacgccgcgcaagacgacgaacaacaaaccaccacacttagatgatgaaatca 2057936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 10332604 - 10332653
Alignment:
Q  3 gcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacaca 52  Q
    ||||||||||   ||||||||||| ||||| |||||||||||||||||||    
T  10332604 gcaacaagacgcgaaatcaaacaatgccgcacaagacgacaaacaacaca 10332653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 11767853 - 11767784
Alignment:
Q  14 gaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    ||||||||||||||  ||  ||||||||| |||||||||||| |||| ||| ||| ||| ||||||||||    
T  11767853 gaaaatcaaacaacttcgtacaagacgacgaacaacacaccaccacactcagatggcgacatcacgaaga 11767784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 19103540 - 19103605
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaa 81  Q
    ||||||||||||||||| ||||||||| ||||||||| | || || | | | ||||||||||||||    
T  19103540 aaatcaaacaacgccgcacaagacgactaacaacacaacgtcgcactaagacgacgaaatcacgaa 19103605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 21152675 - 21152630
Alignment:
Q  143 gatgaatgaggtccatattatagatcacatacatcatttattgaat 188  Q
    |||| ||| ||||||||||||| ||||||||||||||| |||||||    
T  21152675 gatgtatgtggtccatattataaatcacatacatcattaattgaat 21152630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 21159810 - 21159765
Alignment:
Q  143 gatgaatgaggtccatattatagatcacatacatcatttattgaat 188  Q
    |||| ||| ||||||||||||| ||||||||||||||| |||||||    
T  21159810 gatgtatgtggtccatattataaatcacatacatcattaattgaat 21159765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 21163617 - 21163572
Alignment:
Q  143 gatgaatgaggtccatattatagatcacatacatcatttattgaat 188  Q
    |||| ||| ||||||||||||| ||||||||||||||| |||||||    
T  21163617 gatgtatgtggtccatattataaatcacatacatcattaattgaat 21163572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 24089095 - 24089140
Alignment:
Q  143 gatgaatgaggtccatattatagatcacatacatcatttattgaat 188  Q
    |||| ||| ||||||||||||||| ||||| |||||||||||||||    
T  24089095 gatgtatgtggtccatattatagaccacattcatcatttattgaat 24089140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 6279488 - 6279452
Alignment:
Q  152 ggtccatattatagatcacatacatcatttattgaat 188  Q
    ||||||||||||||| ||||||||||||||| |||||    
T  6279488 ggtccatattatagaccacatacatcatttagtgaat 6279452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 8088280 - 8088316
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacaca 52  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  8088280 aaatcaaacaacgccgcacaagacgataaacaacaca 8088316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 11192391 - 11192343
Alignment:
Q  34 caagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaag 82  Q
    ||||||||||||||||||| || |||| ||||| |||||| ||||||||    
T  11192391 caagacgacaaacaacacaacaccacactcaaacgacgaactcacgaag 11192343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 14211242 - 14211206
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacaca 52  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  14211242 aaatcaaacaacgccgcacaagacgacgaacaacaca 14211206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 28540979 - 28541015
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacaca 52  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  28540979 aaatcaaacaacgccgcacaagacgacgaacaacaca 28541015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 2624563 - 2624483
Alignment:
Q  1 ccgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    |||||||||||| | ||||||||| ||||||| ||||||||| |||||||||||| |||| ||  ||||||||||||||||||    
T  2624563 ccgcaacaagacgggaaatcaaactacgccgcacaagacgacgaacaacacaccaccacactc--atgacgaaatcacgaaga 2624483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 18138937 - 18139011
Alignment:
Q  3 gcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatca 77  Q
    |||||||||  ||||||||||||||||||| ||||||||| |||||||||||| |||| |||  |||||||||||    
T  18138937 gcaacaagatggaaaatcaaacaacgccgcacaagacgacgaacaacacaccaccacactcaggtgacgaaatca 18139011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 35261258 - 35261176
Alignment:
Q  1 ccgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    |||||| ||||| |||||||||||||||||||  ||||||||||||||||||||| |||| | | ||||  ||||||||||||    
T  35261258 ccgcaagaagacggaaaatcaaacaacgccgcagaagacgacaaacaacacaccaccacacttagatgatcaaatcacgaaga 35261176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 49126150 - 49126224
Alignment:
Q  3 gcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatca 77  Q
    |||||||||  ||||||||||||||||||| ||||||||| |||||||||||| |||| |||  |||||||||||    
T  49126150 gcaacaagatggaaaatcaaacaacgccgcacaagacgacgaacaacacaccaccacactcaggtgacgaaatca 49126224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 3336178 - 3336261
Alignment:
Q  1 ccgcaacaagactgaaaatcaaacaacg-ccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    |||||||||||  ||||||||||||||| |||| || |||||| |||||||||||| |||| ||| ||||| ||||||||||||    
T  3336178 ccgcaacaagatggaaaatcaaacaacgtccgcacaggacgacgaacaacacaccaccacactcagatgacaaaatcacgaaga 3336261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 46991152 - 46991234
Alignment:
Q  1 ccgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    |||||||||||  | ||||||||||||||| |  ||||||||||||||||||||| |||| ||| ||||| |||||| |||||    
T  46991152 ccgcaacaagatgggaaatcaaacaacgccacagaagacgacaaacaacacaccaccacactcagatgacaaaatcatgaaga 46991234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 10389776 - 10389852
Alignment:
Q  1 ccgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatca 77  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| ||||||| |||| |||| | | |||| |||||||    
T  10389776 ccgcaagaagacggaaaatcaaacaacgccgcacaagacgacgaacaacaaaccaccacacttagatgatgaaatca 10389852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 9528914 - 9528981
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    ||||||||||||||||| ||||||||| ||||||| ||||||||| | | |||| |||||||| ||||    
T  9528914 aaatcaaacaacgccgcacaagacgacgaacaacaaaccatcacacttagatgatgaaatcacaaaga 9528981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 868229 - 868147
Alignment:
Q  1 ccgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    |||||| ||||| | ||||||||||||||||| ||||||||| ||||||| |||| |||| | | |||| |||||||| ||||    
T  868229 ccgcaagaagacgggaaatcaaacaacgccgcacaagacgacgaacaacaaaccaccacacttagatgatgaaatcacaaaga 868147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 9645584 - 9645630
Alignment:
Q  14 gaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcaca 60  Q
    ||||||||||||||||||| ||||||||| |||||||||||| ||||    
T  9645584 gaaaatcaaacaacgccgcacaagacgacgaacaacacaccaccaca 9645630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 32952783 - 32952852
Alignment:
Q  13 tgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    ||||||||||||||| ||||  ||||||||||||||||||||| |||| | | ||||||||||||| ||||    
T  32952783 tgaaaatcaaacaac-ccgcataagacgacaaacaacacaccaacacacttagatgacgaaatcacaaaga 32952852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 35965012 - 35965077
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaa 81  Q
    ||||||||||||||| | || |||||| |||||||||||| |||| ||  ||||||||||||||||    
T  35965012 aaatcaaacaacgccacacaggacgacgaacaacacaccaccacactcggatgacgaaatcacgaa 35965077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 52204389 - 52204465
Alignment:
Q  5 aacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaa 81  Q
    ||||||||  |||||||||||| | | | ||||||||| |||||| || | ||||| ||||||||||||||||||||    
T  52204389 aacaagacgcaaaatcaaacaatgtcacacaagacgacgaacaactcaacgtcacactcaaatgacgaaatcacgaa 52204465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 4643910 - 4643843
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    ||||||||||||||||| ||||||||| ||||||| |||| |||| | | |||| |||||||| ||||    
T  4643910 aaatcaaacaacgccgcacaagacgacgaacaacaaaccaccacacttagatgatgaaatcacaaaga 4643843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 8009398 - 8009465
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    ||||||||||||||||| ||||||||| ||||||| |||| |||| | | |||| |||||||| ||||    
T  8009398 aaatcaaacaacgccgcacaagacgacgaacaacaaaccaccacacttagatgatgaaatcacaaaga 8009465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 18048938 - 18048863
Alignment:
Q  1 ccgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatc 76  Q
    |||||||||| |  |||||||||||||||| | ||||||||||||||||||| || | || ||  |||||||||||    
T  18048938 ccgcaacaaggcgcaaaatcaaacaacgccacacaagacgacaaacaacacaacaccgcattcggatgacgaaatc 18048863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 25273935 - 25273868
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    ||||||||||||||||| ||||||||| ||||||| |||| |||| | | |||| |||||||| ||||    
T  25273935 aaatcaaacaacgccgcacaagacgacgaacaacaaaccaccacacttagatgatgaaatcacaaaga 25273868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 31381701 - 31381776
Alignment:
Q  8 aagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    ||||| |||||||||||||||| || ||||||||| ||||||| |||| |||| | | |||| |||||||| ||||    
T  31381701 aagacggaaaatcaaacaacgctgcacaagacgacgaacaacaaaccaccacacttagatgatgaaatcacaaaga 31381776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 56194668 - 56194586
Alignment:
Q  1 ccgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    |||||| ||||| | ||| ||||||||||||| ||||||||| ||||||| |||| |||| | | |||| |||||||| ||||    
T  56194668 ccgcaagaagacgggaaagcaaacaacgccgcacaagacgacgaacaacaaaccaccacacttagatgatgaaatcacaaaga 56194586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 22300889 - 22300824
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaa 81  Q
    ||||||||||||||||| ||||||||| ||||||||| | || ||  || | ||||||||||||||    
T  22300889 aaatcaaacaacgccgcacaagacgacgaacaacacaacgtcgcacacagacgacgaaatcacgaa 22300824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 27593850 - 27593931
Alignment:
Q  2 cgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    ||||| ||||| | |||||||| || | ||| ||||| ||| |||||||||||| |||| ||| || |||||||||||||||    
T  27593850 cgcaaaaagacgggaaatcaaaaaaagtcgcacaagatgacgaacaacacaccaccacactcagataacgaaatcacgaaga 27593931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 43444452 - 43444411
Alignment:
Q  9 agactgaaaatcaaacaacgccgctcaagacgacaaacaaca 50  Q
    |||| ||||||||||||||||||| ||||||||| |||||||    
T  43444452 agacggaaaatcaaacaacgccgcacaagacgacgaacaaca 43444411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 3435236 - 3435192
Alignment:
Q  144 atgaatgaggtccatattatagatcacatacatcatttattgaat 188  Q
    ||||||| |||||||| |||||| ||||||||| |||||||||||    
T  3435236 atgaatgtggtccataatatagaccacatacattatttattgaat 3435192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 6972875 - 6972795
Alignment:
Q  3 gcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    |||| ||||| | ||| ||||||||||||| ||||||||| ||||||| |||| |||| | | |||| |||||||| ||||    
T  6972875 gcaagaagacaggaaagcaaacaacgccgcacaagacgacgaacaacaaaccaccacacttagatgatgaaatcacaaaga 6972795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 9643428 - 9643392
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacaca 52  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  9643428 aaatcaaacaacgtcgctcaagacgacgaacaacaca 9643392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 193
Target Start/End: Complemental strand, 31262663 - 31262631
Alignment:
Q  161 tatagatcacatacatcatttattgaattaata 193  Q
    |||||||||||||||||||||||| ||||||||    
T  31262663 tatagatcacatacatcatttattaaattaata 31262631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 36194745 - 36194709
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacaca 52  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  36194745 aaatcaaacaacgccgcacaagacgacgaacaacaca 36194709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 47320460 - 47320496
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacaca 52  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  47320460 aaatcaaacaacgccgcacaagacgacgaacaacaca 47320496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 459296 - 459378
Alignment:
Q  1 ccgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    |||||||||||| ||||||||||||||| ||  ||||||||| |||| |||||||  ||| ||| ||||||||||||||||||    
T  459296 ccgcaacaagacggaaaatcaaacaacgtcgtacaagacgacgaacagcacaccacgacactcagatgacgaaatcacgaaga 459378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 4228185 - 4228110
Alignment:
Q  8 aagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    ||||| ||||||||||||||||||| ||||||||| ||||||| ||||||||| | | |||| |||||||| ||||    
T  4228185 aagacggaaaatcaaacaacgccgcacaagacgacgaacaacaaaccatcacacttagatgatgaaatcacaaaga 4228110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 9374581 - 9374660
Alignment:
Q  4 caacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    ||||||||| ||||| ||||||| | ||| ||||| ||| |||||||||||| |||||| | ||||||||||||||||||    
T  9374581 caacaagacggaaaaacaaacaatgacgcacaagatgacgaacaacacaccaccacaataagatgacgaaatcacgaaga 9374660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 17319380 - 17319299
Alignment:
Q  1 ccgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    |||||||||||| ||||||||| |||||| || ||||||||  |||||||||||| |||| ||| |||||||||||| |||||    
T  17319380 ccgcaacaagacggaaaatcaa-caacgctgcacaagacgaagaacaacacaccaccacactcagatgacgaaatcatgaaga 17319299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 9986371 - 9986446
Alignment:
Q  8 aagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    ||||| ||||||||||||||||||| ||||||||| ||||||| |||| |||| | | |||| |||||||| ||||    
T  9986371 aagacggaaaatcaaacaacgccgcacaagacgacgaacaacaaaccaccacacttagatgatgaaatcacaaaga 9986446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 37614147 - 37614230
Alignment:
Q  1 ccgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaa-atgacgaaatcacgaaga 83  Q
    |||||||||||| ||||||||||||||| ||| ||||||||  ||||||||| || |||| |||| || |||||| ||||||||    
T  37614147 ccgcaacaagacggaaaatcaaacaacgacgcacaagacgaagaacaacacatcaccacactcaagattacgaaaccacgaaga 37614230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 7015740 - 7015810
Alignment:
Q  8 aagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcac 78  Q
    ||||| ||||||||||||||||||| ||||||||| ||||||| |||| |||| | | |||| ||||||||    
T  7015740 aagacggaaaatcaaacaacgccgcacaagacgacgaacaacaaaccaccacacttagatgatgaaatcac 7015810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 2808507 - 2808576
Alignment:
Q  14 gaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    ||||||||||||||||||| ||||||||| ||||||| |||| |||| | | |||| |||||||| ||||    
T  2808507 gaaaatcaaacaacgccgcacaagacgacgaacaacaaaccaccacacttagatgatgaaatcacaaaga 2808576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 8805910 - 8805843
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    ||||||||||||| ||| ||||||||| ||||||| |||| |||| ||| |||| |||||||| ||||    
T  8805910 aaatcaaacaacgtcgcacaagacgacgaacaacaaaccaccacactcagatgatgaaatcacaaaga 8805843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 12647975 - 12648026
Alignment:
Q  1 ccgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacaca 52  Q
    ||||||||||||   ||||||||||||||||| ||||||||| |||||||||    
T  12647975 ccgcaacaagacgagaaatcaaacaacgccgcacaagacgacgaacaacaca 12648026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 32913293 - 32913218
Alignment:
Q  8 aagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    ||||| |||||||||||| |||||| ||||||||| ||||||| |||| |||| | | |||| |||||||| ||||    
T  32913293 aagacggaaaatcaaacagcgccgcacaagacgacgaacaacaaaccaccacacttagatgatgaaatcacaaaga 32913218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 20047119 - 20047181
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcac 78  Q
    ||||||||||||||||| ||||||||| ||||||| |||| |||| | | |||| ||||||||    
T  20047119 aaatcaaacaacgccgcacaagacgacgaacaacaaaccaccacacttagatgatgaaatcac 20047181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 30420730 - 30420688
Alignment:
Q  8 aagactgaaaatcaaacaacgccgctcaagacgacaaacaaca 50  Q
    ||||| ||||||||||||||||||| ||||||||| |||||||    
T  30420730 aagacggaaaatcaaacaacgccgcacaagacgacgaacaaca 30420688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 41431087 - 41431005
Alignment:
Q  1 ccgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    |||||| ||||| | ||| ||||||||||||| ||||||||| ||||||| |||| |||| | | |||| |||||||| ||||    
T  41431087 ccgcaagaagacgggaaagcaaacaacgccgcacaagacgacgaacaacaaaccaccacacttagatgatgaaatcacaaaga 41431005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 3308971 - 3308906
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaa 81  Q
    ||||||||||||||||| |||||||||||| |||||| | || || | | | ||||||||||||||    
T  3308971 aaatcaaacaacgccgcacaagacgacaaataacacaacgtcgcactaagacgacgaaatcacgaa 3308906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 4898252 - 4898207
Alignment:
Q  143 gatgaatgaggtccatattatagatcacatacatcatttattgaat 188  Q
    |||| ||| ||||||||||||| ||||||||||||||| |||||||    
T  4898252 gatgtatgtggtccatattataaatcacatacatcattaattgaat 4898207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 4945646 - 4945601
Alignment:
Q  143 gatgaatgaggtccatattatagatcacatacatcatttattgaat 188  Q
    |||| ||| ||||||||||||| ||||||||||||||| |||||||    
T  4945646 gatgtatgtggtccatattataaatcacatacatcattaattgaat 4945601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 191
Target Start/End: Complemental strand, 9709745 - 9709697
Alignment:
Q  143 gatgaatgaggtccatattatagatcacatacatcatttattgaattaa 191  Q
    |||| ||| ||||||||||||| | ||||||||||||| ||||||||||    
T  9709745 gatgtatgtggtccatattataaaccacatacatcattaattgaattaa 9709697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 34599033 - 34598969
Alignment:
Q  14 gaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcac 78  Q
    ||||||||||||||||||| ||||||||  ||||||| |||| |||| | | |||| ||||||||    
T  34599033 gaaaatcaaacaacgccgcacaagacgatgaacaacaaaccaccacacttagatgatgaaatcac 34598969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 43192375 - 43192450
Alignment:
Q  8 aagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    ||||| ||||||||||||||||||| ||||||||| ||||||| |||| |||| | | |||| |||||||||||||    
T  43192375 aagacggaaaatcaaacaacgccgcacaagacgacgaacaacaaaccaccacacttagatgatgaaatcacgaaga 43192450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 35580519 - 35580437
Alignment:
Q  1 ccgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    |||||| ||||| ||||||||||||||| ||| ||||||||| ||||||| |||| |||| | | |||| |||||||||||||    
T  35580519 ccgcaagaagacggaaaatcaaacaacgtcgcacaagacgacgaacaacaaaccaccacacttagatgatgaaatcacgaaga 35580437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 15046955 - 15046874
Alignment:
Q  2 cgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    |||| |||||| | |||||||||| | |||| ||||||||| |||||||||||| |||| ||  ||||||||||||||||||    
T  15046955 cgcaccaagacaggaaatcaaacagcaccgcacaagacgacgaacaacacaccaccacactcggatgacgaaatcacgaaga 15046874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 11196951 - 11196875
Alignment:
Q  1 ccgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatca 77  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| ||||||| |||| |||| | | |||| |||||||    
T  11196951 ccgcaagaagacggaaaatcaaacaacgccgcacaagacgacgaacaacaaaccaccacacttagatgatgaaatca 11196875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 28239879 - 28239820
Alignment:
Q  17 aatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatc 76  Q
    |||||||||||||||| ||||||||| ||||||| |||  |||| |||||||||||||||    
T  28239879 aatcaaacaacgccgcacaagacgacgaacaacaaaccgccacactcaaatgacgaaatc 28239820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 32724510 - 32724579
Alignment:
Q  8 aagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatca 77  Q
    ||||||| ||||||||||||||||| ||||||||| ||||||| |||| |||| | | |||| |||||||    
T  32724510 aagactggaaatcaaacaacgccgcacaagacgacgaacaacaaaccaccacagttagatgatgaaatca 32724579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 34611853 - 34611784
Alignment:
Q  14 gaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    ||||||||||||||||||| ||||||||| ||||||| |||| |||| | | |||| |||||||| ||||    
T  34611853 gaaaatcaaacaacgccgcacaagacgacgaacaacaaaccaccacacttagatgatgaaatcacaaaga 34611784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 43295941 - 43295986
Alignment:
Q  143 gatgaatgaggtccatattatagatcacatacatcatttattgaat 188  Q
    |||| ||| ||||||||||||||| |||||||||||||||||||||    
T  43295941 gatgtatgtggtccatattatagaccacatacatcatttattgaat 43295986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 5333462 - 5333391
Alignment:
Q  5 aacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatc 76  Q
    ||||||||  ||||||||||||| |||| ||||||||| ||||||||| || | || ||| |||||||||||    
T  5333462 aacaagacgcaaaatcaaacaacaccgcacaagacgacgaacaacacaacaccgcactcagatgacgaaatc 5333391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 39153179 - 39153246
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    ||||| ||||||||  | ||||||||| |||||||||||| |||| ||  ||||||||||||||||||    
T  39153179 aaatcgaacaacgcgacacaagacgacgaacaacacaccaccacactcggatgacgaaatcacgaaga 39153246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 44099956 - 44100015
Alignment:
Q  1 ccgcaacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcaca 60  Q
    |||||| ||||| | ||||||||||||||||| ||||||||| ||||||| |||| ||||    
T  44099956 ccgcaaaaagacgggaaatcaaacaacgccgcacaagacgacgaacaacaaaccaccaca 44100015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 4809019 - 4808977
Alignment:
Q  8 aagactgaaaatcaaacaacgccgctcaagacgacaaacaaca 50  Q
    ||||| ||||||||||||||||||| ||||||||| |||||||    
T  4809019 aagacggaaaatcaaacaacgccgcacaagacgacgaacaaca 4808977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 14906960 - 14906994
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaaca 50  Q
    ||||||||||||||||| |||||||||||||||||    
T  14906960 aaatcaaacaacgccgcacaagacgacaaacaaca 14906994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 83
Target Start/End: Original strand, 15597193 - 15597271
Alignment:
Q  5 aacaagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    ||||| || ||||||||| ||| ||| | ||||||||||||||||||||||  ||| ||  |||||||||||| |||||    
T  15597193 aacaaaacggaaaatcaaccaaggcctcacaagacgacaaacaacacaccactacactcggatgacgaaatcatgaaga 15597271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 41896535 - 41896499
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacaca 52  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  41896535 aaatcaaacaacgccgcacaagacgaccaacaacaca 41896499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 192
Target Start/End: Original strand, 45407058 - 45407086
Alignment:
Q  164 agatcacatacatcatttattgaattaat 192  Q
    |||||||||||||||||||||||||||||    
T  45407058 agatcacatacatcatttattgaattaat 45407086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 5434 - 5371
Alignment:
Q  20 caaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    ||||||||||||| ||||||||| ||||||| ||||||||| | |||||| |||||||| ||||    
T  5434 caaacaacgccgcacaagacgacgaacaacaaaccatcacacttaaatgatgaaatcacaaaga 5371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 16359 - 16424
Alignment:
Q  18 atcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcacgaaga 83  Q
    ||||||||||||||| ||||||||||||||||| |||| |||| | | |||| |||||||| ||||    
T  16359 atcaaacaacgccgcacaagacgacaaacaacaaaccaccacacttagatgatgaaatcacaaaga 16424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 361827 - 361898
Alignment:
Q  7 caagactgaaaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcac 78  Q
    |||||| | ||||||||||||||||| ||||||||| ||||||| |||| || | | |||||| ||||||||    
T  361827 caagacaggaaatcaaacaacgccgcacaagacgacgaacaacaaaccaccatacttaaatgatgaaatcac 361898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 6050 - 5988
Alignment:
Q  16 aaatcaaacaacgccgctcaagacgacaaacaacacaccatcacaatcaaatgacgaaatcac 78  Q
    ||||||||||||||||| ||||||||| ||||||||| |||  || ||| | |||||||||||    
T  6050 aaatcaaacaacgccgcacaagacgacgaacaacacatcattgcactcagacgacgaaatcac 5988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 11637 - 11682
Alignment:
Q  143 gatgaatgaggtccatattatagatcacatacatcatttattgaat 188  Q
    |||| ||| ||||||||||||||| ||||||||||||| |||||||    
T  11637 gatgtatgtggtccatattatagaccacatacatcattaattgaat 11682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1266 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1266
Description:

Target: scaffold1266; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 188
Target Start/End: Original strand, 196 - 228
Alignment:
Q  156 catattatagatcacatacatcatttattgaat 188  Q
    ||||||||||| |||||||||||||||||||||    
T  196 catattatagaccacatacatcatttattgaat 228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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