View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3772_low_46 (Length: 401)

Name: NF3772_low_46
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3772_low_46
NF3772_low_46
[»] chr2 (33 HSPs)
chr2 (187-383)||(36796403-36796599)
chr2 (207-375)||(36760024-36760192)
chr2 (191-375)||(36788004-36788188)
chr2 (216-366)||(36775347-36775497)
chr2 (81-175)||(4975710-4975804)
chr2 (81-175)||(4993618-4993712)
chr2 (83-166)||(4976447-4976530)
chr2 (83-166)||(4994354-4994437)
chr2 (83-175)||(41519867-41519959)
chr2 (83-173)||(37545692-37545782)
chr2 (83-175)||(42370892-42370984)
chr2 (83-135)||(8536828-8536880)
chr2 (83-131)||(42369701-42369749)
chr2 (86-155)||(8536171-8536240)
chr2 (83-184)||(37546506-37546607)
chr2 (123-175)||(36390971-36391023)
chr2 (93-184)||(36718974-36719065)
chr2 (83-166)||(41768685-41768768)
chr2 (123-173)||(15602802-15602852)
chr2 (143-184)||(30545437-30545478)
chr2 (123-184)||(41984732-41984793)
chr2 (121-173)||(1271247-1271299)
chr2 (143-182)||(41985894-41985933)
chr2 (153-184)||(44154281-44154312)
chr2 (153-183)||(44154994-44155024)
chr2 (143-184)||(14573266-14573307)
chr2 (143-184)||(21471022-21471063)
chr2 (143-184)||(21471956-21471997)
chr2 (143-184)||(30544732-30544773)
chr2 (118-175)||(34617667-34617724)
chr2 (85-165)||(4386152-4386232)
chr2 (89-184)||(41042547-41042643)
chr2 (89-184)||(45139697-45139793)
[»] chr8 (20 HSPs)
chr8 (81-182)||(12350594-12350695)
chr8 (81-182)||(12349974-12350075)
chr8 (83-184)||(43924495-43924596)
chr8 (81-182)||(43924958-43925059)
chr8 (86-167)||(39257656-39257737)
chr8 (81-166)||(43971301-43971386)
chr8 (81-166)||(43972026-43972111)
chr8 (83-155)||(38686337-38686409)
chr8 (83-159)||(33801529-33801605)
chr8 (86-159)||(33802318-33802391)
chr8 (86-159)||(38687000-38687073)
chr8 (83-140)||(15183790-15183847)
chr8 (83-140)||(39258391-39258448)
chr8 (148-182)||(11676980-11677014)
chr8 (143-184)||(34992266-34992307)
chr8 (146-175)||(35943090-35943119)
chr8 (143-184)||(41859315-41859356)
chr8 (134-182)||(32574801-32574849)
chr8 (143-175)||(35840532-35840564)
chr8 (123-175)||(40450968-40451020)
[»] chr1 (25 HSPs)
chr1 (81-182)||(11469088-11469189)
chr1 (81-186)||(11469705-11469810)
chr1 (81-182)||(14925282-14925383)
chr1 (81-182)||(14924681-14924782)
chr1 (81-175)||(31787492-31787586)
chr1 (81-175)||(31788216-31788310)
chr1 (83-160)||(7463444-7463521)
chr1 (83-160)||(7464012-7464089)
chr1 (83-160)||(11426882-11426959)
chr1 (83-153)||(11427449-11427519)
chr1 (94-160)||(37889908-37889974)
chr1 (85-159)||(38618260-38618334)
chr1 (89-175)||(46134564-46134651)
chr1 (89-175)||(2687675-2687761)
chr1 (83-153)||(37890475-37890545)
chr1 (83-184)||(11032161-11032262)
chr1 (117-184)||(11031436-11031503)
chr1 (97-164)||(29334239-29334306)
chr1 (95-175)||(4641716-4641796)
chr1 (143-184)||(16270212-16270253)
chr1 (143-184)||(23440867-23440908)
chr1 (143-184)||(51974442-51974483)
chr1 (143-175)||(45922246-45922278)
chr1 (123-175)||(49420098-49420150)
chr1 (85-184)||(49611503-49611603)
[»] chr4 (35 HSPs)
chr4 (81-182)||(6247410-6247512)
chr4 (86-182)||(6246791-6246887)
chr4 (81-182)||(10421521-10421622)
chr4 (81-182)||(15481510-15481611)
chr4 (83-182)||(15481042-15481141)
chr4 (45-143)||(10420963-10421058)
chr4 (83-159)||(50710359-50710435)
chr4 (83-172)||(45331395-45331484)
chr4 (86-159)||(53664242-53664315)
chr4 (83-135)||(50709713-50709765)
chr4 (86-184)||(30808626-30808724)
chr4 (83-184)||(30809447-30809548)
chr4 (83-135)||(53665028-53665080)
chr4 (120-175)||(232028-232083)
chr4 (85-175)||(6680286-6680376)
chr4 (93-135)||(13856645-13856687)
chr4 (143-184)||(47377600-47377641)
chr4 (83-175)||(45330579-45330671)
chr4 (143-186)||(1014008-1014051)
chr4 (118-184)||(25370511-25370577)
chr4 (143-184)||(47376857-47376898)
chr4 (87-175)||(34371476-34371564)
chr4 (85-140)||(34956333-34956388)
chr4 (143-186)||(36865719-36865762)
chr4 (85-140)||(50709041-50709096)
chr4 (143-184)||(11417692-11417733)
chr4 (143-184)||(11417939-11417980)
chr4 (110-182)||(11680283-11680356)
chr4 (110-182)||(11688562-11688635)
chr4 (143-184)||(26611285-26611326)
chr4 (143-184)||(29651334-29651375)
chr4 (143-175)||(25970120-25970152)
chr4 (143-175)||(47326791-47326823)
chr4 (143-175)||(47341587-47341619)
chr4 (143-175)||(55514356-55514388)
[»] chr3 (11 HSPs)
chr3 (81-182)||(38337417-38337518)
chr3 (83-184)||(38336949-38337048)
chr3 (85-164)||(44022031-44022110)
chr3 (96-155)||(15450259-15450318)
chr3 (86-175)||(55124428-55124517)
chr3 (143-184)||(19132814-19132855)
chr3 (149-182)||(42108377-42108410)
chr3 (123-175)||(33968195-33968247)
chr3 (83-183)||(49287693-49287793)
chr3 (143-184)||(36750439-36750480)
chr3 (123-175)||(27452637-27452689)
[»] scaffold0189 (2 HSPs)
scaffold0189 (83-182)||(12801-12900)
scaffold0189 (81-182)||(12191-12292)
[»] chr6 (11 HSPs)
chr6 (81-186)||(27763416-27763521)
chr6 (143-184)||(24125977-24126018)
chr6 (143-184)||(24126720-24126761)
chr6 (143-184)||(3542819-3542860)
chr6 (143-184)||(3543065-3543106)
chr6 (143-184)||(7193343-7193384)
chr6 (143-184)||(22582481-22582522)
chr6 (143-184)||(22587312-22587353)
chr6 (143-184)||(33479701-33479742)
chr6 (143-184)||(33480630-33480671)
chr6 (123-175)||(25371183-25371235)
[»] chr5 (17 HSPs)
chr5 (82-175)||(4554671-4554764)
chr5 (83-184)||(4555331-4555432)
chr5 (110-175)||(26712357-26712422)
chr5 (110-175)||(26982095-26982160)
chr5 (83-175)||(6805899-6805991)
chr5 (85-175)||(4789534-4789624)
chr5 (83-166)||(6804775-6804858)
chr5 (96-183)||(17767546-17767633)
chr5 (143-184)||(9142052-9142093)
chr5 (97-184)||(8040400-8040487)
chr5 (89-184)||(39167388-39167483)
chr5 (143-184)||(2319271-2319312)
chr5 (143-184)||(8204125-8204166)
chr5 (143-184)||(15184019-15184060)
chr5 (143-184)||(33002818-33002859)
chr5 (143-184)||(39950409-39950450)
chr5 (143-175)||(42651581-42651613)
[»] chr7 (24 HSPs)
chr7 (83-175)||(46757438-46757530)
chr7 (83-184)||(27599216-27599317)
chr7 (81-184)||(46759202-46759305)
chr7 (83-184)||(27600037-27600138)
chr7 (86-175)||(12732261-12732350)
chr7 (83-175)||(35771201-35771293)
chr7 (143-182)||(44909361-44909400)
chr7 (127-182)||(45887286-45887341)
chr7 (147-182)||(46756277-46756312)
chr7 (143-186)||(47331955-47331998)
chr7 (143-184)||(668184-668225)
chr7 (146-175)||(6730162-6730191)
chr7 (143-184)||(7677811-7677852)
chr7 (143-184)||(17145627-17145668)
chr7 (143-184)||(37468915-37468956)
chr7 (143-184)||(37469007-37469048)
chr7 (143-184)||(38778859-38778900)
chr7 (143-184)||(38779565-38779606)
chr7 (143-184)||(41194518-41194559)
chr7 (143-184)||(45887982-45888023)
chr7 (127-184)||(48259804-48259861)
chr7 (147-175)||(9122664-9122692)
chr7 (143-175)||(24995866-24995898)
chr7 (143-175)||(24996685-24996717)
[»] scaffold0071 (1 HSPs)
scaffold0071 (96-155)||(11873-11932)
[»] scaffold0119 (2 HSPs)
scaffold0119 (121-173)||(29938-29990)
scaffold0119 (121-165)||(36620-36664)
[»] scaffold2003 (1 HSPs)
scaffold2003 (96-175)||(486-565)
[»] scaffold0311 (1 HSPs)
scaffold0311 (143-184)||(162-203)


Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 187 - 383
Target Start/End: Original strand, 36796403 - 36796599
Alignment:
Q  187 ttctcaaaattcacacttaaaagtgactagtgaactggatatatggagttcaatcttgaaccaaaagaacaaagatgaagcttcacattcaaaaactcct 286  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36796403 ttctcaaaattcacacttaaaagtgactagtgaattggatatatggagttcaatcttgaaccaaaagaacaaagatgaagcttcacattcaaaaactcct 36796502  T
Q  287 ccttatattcacccacttgtgaaaaattcaaaaaactatttaagtgaaaagagtctcaaaatctgcaccgagagtcttggctctgaaaccagttcag 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  36796503 ccttatattcacccacttgtgaaaaattcaaaaaactatttaagtgaaaagagtctcaaaatctgcaccgagagtcttggctctcaaagcagttcag 36796599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 207 - 375
Target Start/End: Original strand, 36760024 - 36760192
Alignment:
Q  207 aagtgactagtgaactggatatatggagttcaatcttgaaccaaaagaacaaagatgaagcttcacattcaaaaactcctccttatattcacccacttgt 306  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  36760024 aagtcactagtgaattggatatatggagttcaatcttgaaccaaaagaacaaagatgaagcttcacaatcaaaaactcctccttatattcatccacttgt 36760123  T
Q  307 gaaaaattcaaaaaactatttaagtgaaaagagtctcaaaatctgcaccgagagtcttggctctgaaac 375  Q
    |||||||||||| || ||| ||||||  ||||||||  |||| ||||||||||| ||||| || |||||    
T  36760124 gaaaaattcaaacaattatctaagtgctaagagtcttgaaatttgcaccgagagccttggatcagaaac 36760192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 191 - 375
Target Start/End: Original strand, 36788004 - 36788188
Alignment:
Q  191 caaaattcacacttaaaagtgactagtgaactggatatatggagttcaatcttgaaccaaaagaacaaagatgaagcttcacattcaaaaactcctcctt 290  Q
    ||||| ||||||| |||| | || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36788004 caaaactcacactcaaaaatcacaagtgaattggatatatggagttcaatcttgaaccaaaagaacaaagatgaagcttcacaatcaaaaactcctcctt 36788103  T
Q  291 atattcacccacttgtgaaaaattcaaaaaactatttaagtgaaaagagtctcaaaatctgcaccgagagtcttggctctgaaac 375  Q
    ||||||| |||||||||||||||||||| || ||| ||||||  ||||||||  |||| ||||||||||| ||||| || |||||    
T  36788104 atattcatccacttgtgaaaaattcaaacaattatctaagtgctaagagtcttgaaatttgcaccgagagccttggatcagaaac 36788188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 216 - 366
Target Start/End: Original strand, 36775347 - 36775497
Alignment:
Q  216 gtgaactggatatatggagttcaatcttgaaccaaaagaacaaagatgaagcttcacattcaaaaactcctccttatattcacccacttgtgaaaaattc 315  Q
    ||||| |||||||||||||||||||||||| |||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  36775347 gtgaattggatatatggagttcaatcttgacccaaaaaaagaaagatgaagcttcacaatcaaaaactcctccttatattcacccacttgtgaaaaattc 36775446  T
Q  316 aaaaaactatttaagtgaaaagagtctcaaaatctgcaccgagagtcttgg 366  Q
    | |||| ||||||||||||||||||||  |||| ||||| |||| ||||||    
T  36775447 acaaaattatttaagtgaaaagagtcttgaaatgtgcactgagattcttgg 36775497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 81 - 175
Target Start/End: Complemental strand, 4975804 - 4975710
Alignment:
Q  81 tctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 175  Q
    |||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||| ||||||    
T  4975804 tctgatgttgagtctctatgataaaagtatgttctctactttatttaatggtcaaaattagcttttccatggtgggaaacaacttcccattccca 4975710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 81 - 175
Target Start/End: Complemental strand, 4993712 - 4993618
Alignment:
Q  81 tctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 175  Q
    |||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||| |||||||||||| ||||||    
T  4993712 tctgatgttgagtctctatgataaaagtatgttctctactttatttaatggtcaaaattagcttttccatggtggaaaacaacttcccattccca 4993618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 83 - 166
Target Start/End: Original strand, 4976447 - 4976530
Alignment:
Q  83 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttc 166  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||  |||||||| |||||||||||||||    
T  4976447 tggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaacaacttc 4976530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 83 - 166
Target Start/End: Original strand, 4994354 - 4994437
Alignment:
Q  83 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttc 166  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||  |||||||| |||||||||||||||    
T  4994354 tggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaacaacttc 4994437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 83 - 175
Target Start/End: Original strand, 41519867 - 41519959
Alignment:
Q  83 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 175  Q
    |||||||| ||||||||| ||||||||||||||||||||||| ||| ||||||||  |  ||||||||||||||||| |||||||||||||||    
T  41519867 tggtgttgggtgtctatggtaaaagtatgttctctactttatttaacggtcaaaaaaaactttcccatggtgggaaaaaacttccctttccca 41519959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 83 - 173
Target Start/End: Complemental strand, 37545782 - 37545692
Alignment:
Q  83 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcc 173  Q
    |||||||||||||||||||||| | | |||||  ||||| |||||||||||||| |||  |||||||||||||||||||||||||||||||    
T  37545782 tggtgttgagtgtctatgataagaatgtgttcattacttaatctaatggtcaaatttaactttcccatggtgggaaacaacttccctttcc 37545692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 83 - 175
Target Start/End: Original strand, 42370892 - 42370984
Alignment:
Q  83 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 175  Q
    |||||| ||||||||||||||||| ||| ||||| |||||||||||||| ||| |||   ||||||||||||||||||||||| || ||||||    
T  42370892 tggtgtcgagtgtctatgataaaactatattctccactttatctaatggccaatatttactttcccatggtgggaaacaactttccattccca 42370984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 8536828 - 8536880
Alignment:
Q  83 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaa 135  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  8536828 tggtgttgagtgtctatgataaaaccatgttctctactttatctaatggtcaa 8536880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 83 - 131
Target Start/End: Complemental strand, 42369749 - 42369701
Alignment:
Q  83 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatgg 131  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42369749 tggtgttgagtgtctatgataaaattatgttctctactttatctaatgg 42369701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 86 - 155
Target Start/End: Complemental strand, 8536240 - 8536171
Alignment:
Q  86 tgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgg 155  Q
    |||||||||||||||||||||  ||||||||||||||||||||| ||||| |||   |||||||||||||    
T  8536240 tgttgagtgtctatgataaaatcatgttctctactttatctaatcgtcaatatttactttcccatggtgg 8536171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 184
Target Start/End: Original strand, 37546506 - 37546607
Alignment:
Q  83 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaa 182  Q
    |||||||||| ||||| ||||| | | |||||  ||||| ||||| |||||||| |||  ||||||||| |||||||||||| ||||||||||  |||||    
T  37546506 tggtgttgagagtctacgataagaatgtgttcgttacttaatctagtggtcaaatttaactttcccatgatgggaaacaactcccctttcccattttaaa 37546605  T
Q  183 tg 184  Q
    ||    
T  37546606 tg 37546607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 36391023 - 36390971
Alignment:
Q  123 atctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 175  Q
    |||||||||| ||||||   |||||||||||||||||||||||||||||||||    
T  36391023 atctaatggttaaaatttactttcccatggtgggaaacaacttccctttccca 36390971  T

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Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 93 - 184
Target Start/End: Original strand, 36718974 - 36719065
Alignment:
Q  93 tgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    |||||||||||||||||||||   || || || ||||||| |||||||| ||||| ||||| |||||||| || ||||||||| | ||||||    
T  36718974 tgtctatgataaaagtatgtttcttatttaatttaatggttaaaattagctttcctatggtaggaaacaagtttcctttcccatactaaatg 36719065  T

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Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 166
Target Start/End: Original strand, 41768685 - 41768768
Alignment:
Q  83 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttc 166  Q
    |||||||||| | |||||||||   | |||||| ||| | |||||||||||||||||   ||||||||||||||||||||||||    
T  41768685 tggtgttgagagactatgataactatgtgttctttacctaatctaatggtcaaaattgactttcccatggtgggaaacaacttc 41768768  T

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Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 15602802 - 15602852
Alignment:
Q  123 atctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcc 173  Q
    |||||||||||||||    ||||||||||||||||||||||||||||||||    
T  15602802 atctaatggtcaaaaaatattttcccatggtgggaaacaacttccctttcc 15602852  T

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Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 30545437 - 30545478
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||||  ||||||||||||||||||||||||||||||||    
T  30545437 tttcccatcatgggaaacaacttccctttcccaaattaaatg 30545478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 184
Target Start/End: Complemental strand, 41984793 - 41984732
Alignment:
Q  123 atctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    |||||||||||| || ||| |||||||||||| |||| ||||  ||||||||||||||||||    
T  41984793 atctaatggtcagaaatagctttcccatggtgagaaaaaactagcctttcccaaattaaatg 41984732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 1271299 - 1271247
Alignment:
Q  121 ttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcc 173  Q
    |||||||| ||| ||||||||||||||||| |||| ||||||||| |||||||    
T  1271299 ttatctaacggttaaaattagttttcccatagtggaaaacaactttcctttcc 1271247  T

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Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 143 - 182
Target Start/End: Original strand, 41985894 - 41985933
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaa 182  Q
    |||| |||||||| ||||||||||||||||||||||||||    
T  41985894 tttctcatggtggaaaacaacttccctttcccaaattaaa 41985933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 153 - 184
Target Start/End: Complemental strand, 44154312 - 44154281
Alignment:
Q  153 tgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||||||||||||||||||||||||||||    
T  44154312 tgggaaacaacttccctttcccaaattaaatg 44154281  T

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Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 183
Target Start/End: Original strand, 44154994 - 44155024
Alignment:
Q  153 tgggaaacaacttccctttcccaaattaaat 183  Q
    |||||||||||||||||||||||||||||||    
T  44154994 tgggaaacaacttccctttcccaaattaaat 44155024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 14573307 - 14573266
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  14573307 tttcccatggtgggaaaaaactctcctttcccaaattaaatg 14573266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 21471063 - 21471022
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  21471063 tttcccatggtgggaaagaactctcctttcccaaattaaatg 21471022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 21471956 - 21471997
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  21471956 tttcccatggtgggaaagaactctcctttcccaaattaaatg 21471997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 30544773 - 30544732
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||||  ||||||||||||||| ||||||||||||||||    
T  30544773 tttcccatcatgggaaacaacttccatttcccaaattaaatg 30544732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 34617724 - 34617667
Alignment:
Q  118 actttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 175  Q
    |||| ||||||||||||||| ||  |||||||||||||||||||| |  |||||||||    
T  34617724 acttaatctaatggtcaaaaataactttcccatggtgggaaacaattatcctttccca 34617667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 165
Target Start/End: Original strand, 4386152 - 4386232
Alignment:
Q  85 gtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaactt 165  Q
    |||||||| || |||||||| | |||| ||| || || ||||||  ||  ||||||| |||||||||||||||||||||||    
T  4386152 gtgttgagagtgtatgataagactatgctctatatttaatctaaccgtttaaattagctttcccatggtgggaaacaactt 4386232  T

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Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 184
Target Start/End: Complemental strand, 41042643 - 41042547
Alignment:
Q  89 tgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaatta-gttttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    |||||||||||||||| | |||| ||| || || |||||||||||||||  |  |||||||||||||||||| ||    |||||| |||||||||||    
T  41042643 tgagtgtctatgataacattatggtctatatttgatctaatggtcaaaaaaatattttcccatggtgggaaagaagcctcctttctcaaattaaatg 41042547  T

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Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 184
Target Start/End: Complemental strand, 45139793 - 45139697
Alignment:
Q  89 tgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaatta-gttttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    |||||||||||||||| | |||| ||| || || |||||||||||||||  |  |||||||||| ||| ||| || |  ||||||||||||||||||    
T  45139793 tgagtgtctatgataacattatggtctatatttgatctaatggtcaaaaaaatattttcccatgatggaaaagaagtctcctttcccaaattaaatg 45139697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 81 - 182
Target Start/End: Original strand, 12350594 - 12350695
Alignment:
Q  81 tctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaatta 180  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  12350594 tctggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaggtttcccatggtgggaaacaatttccctttcccaaatta 12350693  T
Q  181 aa 182  Q
    ||    
T  12350694 aa 12350695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 81 - 182
Target Start/End: Complemental strand, 12350075 - 12349974
Alignment:
Q  81 tctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaatta 180  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  12350075 tctggtgttgagtgtctatgataaaagcatgttctttactttatctaatggttaaaattagtttttccatggtgggaaacaacttccctttcccaaatta 12349976  T
Q  181 aa 182  Q
    ||    
T  12349975 aa 12349974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 83 - 184
Target Start/End: Complemental strand, 43924596 - 43924495
Alignment:
Q  83 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaa 182  Q
    ||||||||||||| |||||||||| ||||||||||| || |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  43924596 tggtgttgagtgtttatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtgggaaacaacttccctttcccaaattaaa 43924497  T
Q  183 tg 184  Q
    ||    
T  43924496 tg 43924495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 81 - 182
Target Start/End: Original strand, 43924958 - 43925059
Alignment:
Q  81 tctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaatta 180  Q
    |||||||||||||||||||||||||| ||||||||||| || |||||| |||||||||||  |||| |||||||||||||||||||||||||||||||||    
T  43924958 tctggtgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaattaactttctcatggtgggaaacaacttccctttcccaaatta 43925057  T
Q  181 aa 182  Q
    ||    
T  43925058 aa 43925059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 86 - 167
Target Start/End: Complemental strand, 39257737 - 39257656
Alignment:
Q  86 tgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttcc 167  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  39257737 tgttgagtctctatgataaaagtatgttctctactttatttaatggtcaaaattagctttcccatggtgggaaacaacttcc 39257656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 81 - 166
Target Start/End: Complemental strand, 43971386 - 43971301
Alignment:
Q  81 tctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttc 166  Q
    |||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  43971386 tctgatgttgagtctctatgataaaagtatgttctctactttatttaatggtcaaaattagctttcccatggtgggaaacaacttc 43971301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 81 - 166
Target Start/End: Original strand, 43972026 - 43972111
Alignment:
Q  81 tctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttc 166  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||  |||||||| |||||||||||||||    
T  43972026 tctggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaacaacttc 43972111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 38686409 - 38686337
Alignment:
Q  83 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgg 155  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||   |||||||||||||    
T  38686409 tggtgttgagtgtctatgataaaaccatgttctctactttatctaatggtcaatatttactttcccatggtgg 38686337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 83 - 159
Target Start/End: Complemental strand, 33801605 - 33801529
Alignment:
Q  83 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaa 159  Q
    ||||||||||||||||||||||||  |||||||||||||||| |||||||||| |||   ||| |||||||||||||    
T  33801605 tggtgttgagtgtctatgataaaaccatgttctctactttatttaatggtcaatatttacttttccatggtgggaaa 33801529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 86 - 159
Target Start/End: Original strand, 33802318 - 33802391
Alignment:
Q  86 tgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaa 159  Q
    |||||||||||||||||||||  |||||||||| ||||| |||||||||| |||   |||||||||||||||||    
T  33802318 tgttgagtgtctatgataaaaccatgttctctattttatttaatggtcaatatttactttcccatggtgggaaa 33802391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 86 - 159
Target Start/End: Original strand, 38687000 - 38687073
Alignment:
Q  86 tgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaa 159  Q
    |||||||||||||||||||||  |||||||||||||||||||||| |||| |||   |||||||| ||||||||    
T  38687000 tgttgagtgtctatgataaaatcatgttctctactttatctaatgatcaatatttactttcccattgtgggaaa 38687073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 15183790 - 15183847
Alignment:
Q  83 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaatta 140  Q
    |||| |||||||||| ||||||||  ||||| ||||||||||||||||||||||||||    
T  15183790 tggttttgagtgtctgtgataaaatcatgttttctactttatctaatggtcaaaatta 15183847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 39258391 - 39258448
Alignment:
Q  83 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaatta 140  Q
    |||||||||||||||| | |||||||||||||| || ||||||||||||| |||||||    
T  39258391 tggtgttgagtgtctacggtaaaagtatgttctttagtttatctaatggttaaaatta 39258448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 182
Target Start/End: Complemental strand, 11677014 - 11676980
Alignment:
Q  148 catggtgggaaacaacttccctttcccaaattaaa 182  Q
    |||||||||||| ||||||||||||||||||||||    
T  11677014 catggtgggaaagaacttccctttcccaaattaaa 11676980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 34992266 - 34992307
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  34992266 tttcccatggtgggaaaaaactctcctttcccaaattaaatg 34992307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 175
Target Start/End: Complemental strand, 35943119 - 35943090
Alignment:
Q  146 cccatggtgggaaacaacttccctttccca 175  Q
    ||||||||||||||||||||||||||||||    
T  35943119 cccatggtgggaaacaacttccctttccca 35943090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 41859356 - 41859315
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  41859356 tttcccatggtgggaaagaactctcctttcccaaattaaatg 41859315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 32574801 - 32574849
Alignment:
Q  134 aaaattagttttcccatggtgggaaacaacttccctttcccaaattaaa 182  Q
    |||||||| ||| |||||||||||||||||||| | |||||| ||||||    
T  32574801 aaaattagctttaccatggtgggaaacaacttctcattcccatattaaa 32574849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 175
Target Start/End: Original strand, 35840532 - 35840564
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttccca 175  Q
    |||||||| ||||||||||||||||||||||||    
T  35840532 tttcccatcgtgggaaacaacttccctttccca 35840564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 175
Target Start/End: Original strand, 40450968 - 40451020
Alignment:
Q  123 atctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 175  Q
    |||||||||| ||||||   ||||||||||||||||||||||| | |||||||    
T  40450968 atctaatggttaaaatttactttcccatggtgggaaacaacttacatttccca 40451020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 81 - 182
Target Start/End: Complemental strand, 11469189 - 11469088
Alignment:
Q  81 tctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaatta 180  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  11469189 tctggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattagctttcccatggtgggaaacaacttccctttcctaaatta 11469090  T
Q  181 aa 182  Q
    ||    
T  11469089 aa 11469088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 81 - 186
Target Start/End: Original strand, 11469705 - 11469810
Alignment:
Q  81 tctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaatta 180  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||    
T  11469705 tctggtgttgaatgtctatgataaaagtatgttctctactttatctaatggtcaaaattagtttttccatggtgaaaaacaacttccctttcccaaatta 11469804  T
Q  181 aatgtc 186  Q
    ||||||    
T  11469805 aatgtc 11469810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 81 - 182
Target Start/End: Original strand, 14925282 - 14925383
Alignment:
Q  81 tctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaatta 180  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||    
T  14925282 tctggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagctttcccatggtgggaaacaactttccttccccaaatta 14925381  T
Q  181 aa 182  Q
    ||    
T  14925382 aa 14925383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 81 - 182
Target Start/End: Complemental strand, 14924782 - 14924681
Alignment:
Q  81 tctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaatta 180  Q
    |||||||||||||||||||||||||| ||||||||||| || || ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14924782 tctggtgttgagtgtctatgataaaaatatgttctctatttaatttaacggtcaaaattagctttcccatggtgggaaacaacttccctttcccaaatta 14924683  T
Q  181 aa 182  Q
    ||    
T  14924682 aa 14924681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 81 - 175
Target Start/End: Complemental strand, 31787586 - 31787492
Alignment:
Q  81 tctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 175  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||    
T  31787586 tctgatgttgagtctctatgataaaagtatgttctctactttatctaatggtcaaaattagcttttccatggtgggaaacaacttcccattccca 31787492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 81 - 175
Target Start/End: Original strand, 31788216 - 31788310
Alignment:
Q  81 tctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 175  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||  |||||||||||||||||||||||| | ||||||    
T  31788216 tctggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatggtgggaaacaacttctcattccca 31788310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 7463521 - 7463444
Alignment:
Q  83 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaac 160  Q
    |||||||||  ||||||||||||| | |||||| || || ||||||||||||||||||| ||||||||||||||||||    
T  7463521 tggtgttgatggtctatgataaaactgtgttctttatttaatctaatggtcaaaattagctttcccatggtgggaaac 7463444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 7464012 - 7464089
Alignment:
Q  83 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaac 160  Q
    |||||||||  ||||||||||||  | ||||||||| || |||| |||||||||||||||||||||||||||||||||    
T  7464012 tggtgttgatggtctatgataaagttgtgttctctagttaatctgatggtcaaaattagttttcccatggtgggaaac 7464089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 11426959 - 11426882
Alignment:
Q  83 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaac 160  Q
    |||||||||  ||||||||||||| | |||||| || || ||||||||||||||||||| ||||||||||||||||||    
T  11426959 tggtgttgatggtctatgataaaactgtgttctttagttaatctaatggtcaaaattagctttcccatggtgggaaac 11426882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 153
Target Start/End: Original strand, 11427449 - 11427519
Alignment:
Q  83 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggt 153  Q
    |||||||||  ||||||||||||  | ||||||||| || |||| ||||||||||||||||||||||||||    
T  11427449 tggtgttgatggtctatgataaagttgtgttctctagttaatctgatggtcaaaattagttttcccatggt 11427519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 37889974 - 37889908
Alignment:
Q  94 gtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaac 160  Q
    ||||||||||||| | |||||| || || ||||||||||||||||| | ||||||||||||||||||    
T  37889974 gtctatgataaaactgtgttctttagttaatctaatggtcaaaattcgctttcccatggtgggaaac 37889908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 38618334 - 38618260
Alignment:
Q  85 gtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaa 159  Q
    |||||||| ||||||||||| | | ||||| |||||| |||||||||||||| |||  |||||||||||||||||    
T  38618334 gtgttgagagtctatgataagaatgtgttcactacttaatctaatggtcaaacttaactttcccatggtgggaaa 38618260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 89 - 175
Target Start/End: Original strand, 46134564 - 46134651
Alignment:
Q  89 tgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaatta-gttttcccatggtgggaaacaacttccctttccca 175  Q
    ||||||||| |||||| |  ||| ||| || || |||||||||| |||| || ||||||||||| |||||||||||||||||||||||    
T  46134564 tgagtgtctttgataacatcatggtctatatttgatctaatggtaaaaagtaagttttcccatgatgggaaacaacttccctttccca 46134651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 175
Target Start/End: Original strand, 2687675 - 2687761
Alignment:
Q  89 tgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 175  Q
    |||| ||||||||||||| |||||||  || || ||||||  ||||||| || ||||||||||||||||||||| |  |||||||||    
T  2687675 tgagagtctatgataaaactatgttccttagttaatctaactgtcaaaaataattttcccatggtgggaaacaattatcctttccca 2687761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 153
Target Start/End: Original strand, 37890475 - 37890545
Alignment:
Q  83 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggt 153  Q
    |||||||||  ||||||||||||  | ||||||||  || |||| ||||||||||||||||||||||||||    
T  37890475 tggtgttgatggtctatgataaagttgtgttctcttgttaatctgatggtcaaaattagttttcccatggt 37890545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 83 - 184
Target Start/End: Original strand, 11032161 - 11032262
Alignment:
Q  83 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaa 182  Q
    |||||||||| ||| ||||||| | | |||||  ||||| |||||||||||||| | |  |||||||||||||||||| | | ||||||||||  |||||    
T  11032161 tggtgttgagagtccatgataagaatgtgttcattacttaatctaatggtcaaattcaactttcccatggtgggaaactattcccctttcccatgttaaa 11032260  T
Q  183 tg 184  Q
    ||    
T  11032261 tg 11032262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 117 - 184
Target Start/End: Complemental strand, 11031503 - 11031436
Alignment:
Q  117 tactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||| |||||||||||||| |||  |||||||||||||||||| | | ||||||||||  |||||||    
T  11031503 tacttaatctaatggtcaaatttaactttcccatggtgggaaactattcccctttcccatgttaaatg 11031436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 97 - 164
Target Start/End: Complemental strand, 29334306 - 29334239
Alignment:
Q  97 tatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaact 164  Q
    ||||||||||||||| ||| || || |||||||||  ||||||   ||||||||||||||||||||||    
T  29334306 tatgataaaagtatggtctttatttgatctaatgggtaaaatttactttcccatggtgggaaacaact 29334239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 175
Target Start/End: Original strand, 4641716 - 4641796
Alignment:
Q  95 tctatgataaaagtatgttctctactttatctaatgg-tcaaaattagttttcccatggtgggaaacaacttccctttccca 175  Q
    |||||||||||| ||||||||||| || ||| ||||| | |||||||  |||||| ||||||||||||| | ||||||||||    
T  4641716 tctatgataaaactatgttctctatttgatccaatggttgaaaatta-ctttcccttggtgggaaacaattcccctttccca 4641796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 16270253 - 16270212
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  16270253 tttcccatggtgggaaagaactctcctttcccaaattaaatg 16270212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 23440867 - 23440908
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  23440867 tttcccatggtgggaaagaactctcctttcccaaattaaatg 23440908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 51974483 - 51974442
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  51974483 tttcccatggtgggaaagaactctcctttcccaaattaaatg 51974442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 175
Target Start/End: Complemental strand, 45922278 - 45922246
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttccca 175  Q
    ||||||||||||||||||||| |||||||||||    
T  45922278 tttcccatggtgggaaacaacctccctttccca 45922246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 49420150 - 49420098
Alignment:
Q  123 atctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 175  Q
    |||||||||||||||  || ||||||||  ||||||||||||| |||||||||    
T  49420150 atctaatggtcaaaaaaagctttcccatcatgggaaacaactttcctttccca 49420098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 184
Target Start/End: Original strand, 49611503 - 49611603
Alignment:
Q  85 gtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaat-tagttttcccatggtgggaaacaacttccctttcccaaattaaat 183  Q
    |||||||| | | ||| ||||| | ||||| ||| || ||||||||| |||||  || |||||||||| ||||||| ||||  |||||||||||||||||    
T  49611503 gtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaattttcccatgatgggaaaaaactagcctttcccaaattaaat 49611602  T
Q  184 g 184  Q
    |    
T  49611603 g 49611603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 81 - 182
Target Start/End: Original strand, 6247410 - 6247512
Alignment:
Q  81 tctggtgttgagtgtctatgataaaa-gtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaatt 179  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||    
T  6247410 tctggtgttgagtgtctatgataaaaagtatgttctctactttatctaatgatcaaaattagttttcccatgatgagaaacaacttccctttcccaaatt 6247509  T
Q  180 aaa 182  Q
    |||    
T  6247510 aaa 6247512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 86 - 182
Target Start/End: Complemental strand, 6246887 - 6246791
Alignment:
Q  86 tgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaa 182  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||    
T  6246887 tgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaactttcccatggtgggaaacaatttccctttcccaaattaaa 6246791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 81 - 182
Target Start/End: Original strand, 10421521 - 10421622
Alignment:
Q  81 tctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaatta 180  Q
    |||||||||||||||||||||||||| ||||||||||| || |||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  10421521 tctggtgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtggaaaacaacttccctttcccaaatta 10421620  T
Q  181 aa 182  Q
    ||    
T  10421621 aa 10421622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 81 - 182
Target Start/End: Original strand, 15481510 - 15481611
Alignment:
Q  81 tctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaatta 180  Q
    ||||||||||||| |||||||||||| ||||||||||| || |||||  ||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  15481510 tctggtgttgagtttctatgataaaaatatgttctctatttaatctaccggtcaaaattagttttcccattgtgggaaacaacttccctttcgcaaatta 15481609  T
Q  181 aa 182  Q
    ||    
T  15481610 aa 15481611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 83 - 182
Target Start/End: Complemental strand, 15481141 - 15481042
Alignment:
Q  83 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaa 182  Q
    |||||||||| ||||||||||||| ||||||||||| || |||||| |||||||||||| |||||||||  ||||||||||||||||| |||||||||||    
T  15481141 tggtgttgagagtctatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatgacgggaaacaacttcccttccccaaattaaa 15481042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 45 - 143
Target Start/End: Complemental strand, 10421058 - 10420963
Alignment:
Q  45 cagctgcaagtggtgggtcaatatggnnnnnnnnnntctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagtt 143  Q
    ||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  10421058 cagctgcaagtggtgggtcaatatggaaaaaaa---tctggtgttgagtgtctatgataaaagtatgttatctagtttatctaatggtcaaaattagtt 10420963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 50710359 - 50710435
Alignment:
Q  83 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaa 159  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||||||| |||   |||||||||||||||||    
T  50710359 tggtgttgagtgtctatgataaattcatgttctctactttatctaatggtcaatatttactttcccatggtgggaaa 50710435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 83 - 172
Target Start/End: Original strand, 45331395 - 45331484
Alignment:
Q  83 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttc 172  Q
    |||||||||||||||||||||| | | |||||  ||||| |||||||||||||| |||  |||| ||||||||||||||||| |||||||    
T  45331395 tggtgttgagtgtctatgataagaatgtgttcattacttaatctaatggtcaaatttaactttctcatggtgggaaacaactcccctttc 45331484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 86 - 159
Target Start/End: Complemental strand, 53664315 - 53664242
Alignment:
Q  86 tgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaa 159  Q
    |||||||||||||||||||||  |||||||||| |||||||||||||||| |||   |||||||||||||||||    
T  53664315 tgttgagtgtctatgataaaaccatgttctctattttatctaatggtcaatatttactttcccatggtgggaaa 53664242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 83 - 135
Target Start/End: Complemental strand, 50709765 - 50709713
Alignment:
Q  83 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaa 135  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  50709765 tggtgttgagtgtctatgataaaactatgttctctactttatctaatagtcaa 50709713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 184
Target Start/End: Complemental strand, 30808724 - 30808626
Alignment:
Q  86 tgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||||||||||||||| | | | |||  ||||| |||||||||||||| |||  ||||||||||||||||||||||  |||||||||  |||||||    
T  30808724 tgttgagtgtctatgataagaatgtattcattacttaatctaatggtcaaatttaactttcccatggtgggaaacaactctcctttcccattttaaatg 30808626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 83 - 184
Target Start/End: Original strand, 30809447 - 30809548
Alignment:
Q  83 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaa 182  Q
    |||||||||| ||||||||||||| | |||||  ||||| ||||| |||||||| |||  |||| |||||||| |||||||| ||||||||||  |||||    
T  30809447 tggtgttgagagtctatgataaaaatgtgttcattacttaatctagtggtcaaatttaactttctcatggtggaaaacaactcccctttcccattttaaa 30809546  T
Q  183 tg 184  Q
    ||    
T  30809547 tg 30809548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 53665028 - 53665080
Alignment:
Q  83 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaa 135  Q
    ||||||||||||||||||||||||  |||||||||||||||| ||||||||||    
T  53665028 tggtgttgagtgtctatgataaaaccatgttctctactttatttaatggtcaa 53665080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 120 - 175
Target Start/End: Original strand, 232028 - 232083
Alignment:
Q  120 tttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 175  Q
    ||||||||||||| ||||||   |||||||||||||||||||||||||||||||||    
T  232028 tttatctaatggttaaaatttactttcccatggtgggaaacaacttccctttccca 232083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 85 - 175
Target Start/End: Original strand, 6680286 - 6680376
Alignment:
Q  85 gtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 175  Q
    ||||||||  |||||||||||| |||||||| ||||| ||||||||||||| |||   |||||||||||| |||||   ||||||||||||    
T  6680286 gtgttgagaatctatgataaaactatgttctttacttaatctaatggtcaatatttactttcccatggtgagaaactctttccctttccca 6680376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 93 - 135
Target Start/End: Complemental strand, 13856687 - 13856645
Alignment:
Q  93 tgtctatgataaaagtatgttctctactttatctaatggtcaa 135  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  13856687 tgtctatgataaaggtatgttctctactttatctaatggtcaa 13856645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 47377600 - 47377641
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  47377600 tttcccatggtgggaaacaactcccctttcccaaattaaatg 47377641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 83 - 175
Target Start/End: Complemental strand, 45330671 - 45330579
Alignment:
Q  83 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 175  Q
    |||||||||| ||||||||||| | | | |||  ||||| ||||| |||||||| |||  ||| |||||||||||||||||| ||||||||||    
T  45330671 tggtgttgagagtctatgataagaatgtattcattacttaatctagtggtcaaatttaacttttccatggtgggaaacaactcccctttccca 45330579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 186
Target Start/End: Original strand, 1014008 - 1014051
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatgtc 186  Q
    |||||||||||||||||||||||| ||| |||||||||||||||    
T  1014008 tttcccatggtgggaaacaacttcacttacccaaattaaatgtc 1014051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 25370577 - 25370511
Alignment:
Q  118 actttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    |||| |||||||||||| ||  || ||||||||||||||||| ||||  ||||||||||||||||||    
T  25370577 acttgatctaatggtcagaaaaagctttcccatggtgggaaaaaactagcctttcccaaattaaatg 25370511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 47376898 - 47376857
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||||| |||||||||||| |||||||||||||||||||    
T  47376898 tttcccatgatgggaaacaactcccctttcccaaattaaatg 47376857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 175
Target Start/End: Complemental strand, 34371564 - 34371476
Alignment:
Q  87 gttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 175  Q
    |||||||||| ||||||||| ||||||   ||||  ||||||||| |||||  |  |||||||||||||||||||| | ||||||||||    
T  34371564 gttgagtgtccatgataaaattatgtttcttactcaatctaatggacaaaaaaaactttcccatggtgggaaacaattcccctttccca 34371476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 85 - 140
Target Start/End: Complemental strand, 34956388 - 34956333
Alignment:
Q  85 gtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaatta 140  Q
    |||||||| ||||||||||||| | |||||| ||||| |||||| |||||||||||    
T  34956388 gtgttgagagtctatgataaaaatgtgttctttacttgatctaagggtcaaaatta 34956333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 143 - 186
Target Start/End: Original strand, 36865719 - 36865762
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatgtc 186  Q
    ||||||||||||||||| ||||  ||||||||||||||||||||    
T  36865719 tttcccatggtgggaaagaactctcctttcccaaattaaatgtc 36865762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 85 - 140
Target Start/End: Complemental strand, 50709096 - 50709041
Alignment:
Q  85 gtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaatta 140  Q
    |||||||| ||||||||||||| | |||||| ||||| |||||| |||||||||||    
T  50709096 gtgttgagagtctatgataaaaatgtgttctttacttgatctaagggtcaaaatta 50709041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 11417733 - 11417692
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  11417733 tttcccatggtgggaaagaactctcctttcccaaattaaatg 11417692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 11417939 - 11417980
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  11417939 tttcccatggtgggaaagaactctcctttcccaaattaaatg 11417980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 11680356 - 11680283
Alignment:
Q  110 tgttctctactttatctaatggtcaaaat-tagttttcccatggtgggaaacaacttccctttcccaaattaaa 182  Q
    ||||| ||| || |||||||||||||||  ||  ||||||||||||||||| ||||  ||||||||||||||||    
T  11680356 tgttccctatttaatctaatggtcaaaaactaactttcccatggtgggaaaaaactaacctttcccaaattaaa 11680283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 11688635 - 11688562
Alignment:
Q  110 tgttctctactttatctaatggtcaaaat-tagttttcccatggtgggaaacaacttccctttcccaaattaaa 182  Q
    ||||| ||| || |||||||||||||||  ||  ||||||||||||||||| ||||  ||||||||||||||||    
T  11688635 tgttccctatttaatctaatggtcaaaaactaactttcccatggtgggaaaaaactaacctttcccaaattaaa 11688562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 26611285 - 26611326
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  26611285 tttcccatggtgggaaaaaactctcctttcccaaattaaatg 26611326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 29651334 - 29651375
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  29651334 tttcccatggtgggaaagaactctcctttcccaaattaaatg 29651375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 175
Target Start/End: Complemental strand, 25970152 - 25970120
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttccca 175  Q
    |||||||||||||||||||||| ||||||||||    
T  25970152 tttcccatggtgggaaacaactcccctttccca 25970120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 175
Target Start/End: Original strand, 47326791 - 47326823
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttccca 175  Q
    ||||||||||||||||||||||| |||||||||    
T  47326791 tttcccatggtgggaaacaactttcctttccca 47326823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 175
Target Start/End: Original strand, 47341587 - 47341619
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttccca 175  Q
    ||||||||||||||||||||||| |||||||||    
T  47341587 tttcccatggtgggaaacaactttcctttccca 47341619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 175
Target Start/End: Original strand, 55514356 - 55514388
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttccca 175  Q
    ||||||||||||||||||||||| |||||||||    
T  55514356 tttcccatggtgggaaacaactttcctttccca 55514388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 81 - 182
Target Start/End: Original strand, 38337417 - 38337518
Alignment:
Q  81 tctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaatta 180  Q
    |||||||||||||||||||||||||| ||||||||||| || |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38337417 tctggtgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtgggaaacaacttccctttcccaaatta 38337516  T
Q  181 aa 182  Q
    ||    
T  38337517 aa 38337518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 83 - 184
Target Start/End: Complemental strand, 38337048 - 38336949
Alignment:
Q  83 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaa 182  Q
    |||||||||||||||  ||||||| ||||||||||| || |||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  38337048 tggtgttgagtgtct--gataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtgggaaacaacttcccttccccaaattaaa 38336951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 85 - 164
Target Start/End: Original strand, 44022031 - 44022110
Alignment:
Q  85 gtgttgagtgtctatgataaaagtatgttctctacttt-atctaatggtcaaaattagttttcccatggtgggaaacaact 164  Q
    ||||||||||| |||||||||||||||||| ||| ||| |||||||||||||| ||  |||||||||||||| ||||||||    
T  44022031 gtgttgagtgtgtatgataaaagtatgttc-ctagtttaatctaatggtcaaatttttttttcccatggtggaaaacaact 44022110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 96 - 155
Target Start/End: Complemental strand, 15450318 - 15450259
Alignment:
Q  96 ctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgg 155  Q
    ||||||||||| |||||||||||||| ||||||||||||| ||||  |||||||||||||    
T  15450318 ctatgataaaaatatgttctctacttaatctaatggtcaagattaactttcccatggtgg 15450259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 175
Target Start/End: Complemental strand, 55124517 - 55124428
Alignment:
Q  86 tgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 175  Q
    |||||||  |||||||||||| |||||||| ||| | ||||||| ||||| |||  |||||||||||||||||||   ||||||||||||    
T  55124517 tgttgagaatctatgataaaactatgttctttacatgatctaatagtcaatatttattttcccatggtgggaaactctttccctttccca 55124428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 19132814 - 19132855
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||||||||||||| ||||| ||||||||||||||||||    
T  19132814 tttcccatggtgggaaagaactttcctttcccaaattaaatg 19132855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 182
Target Start/End: Complemental strand, 42108410 - 42108377
Alignment:
Q  149 atggtgggaaacaacttccctttcccaaattaaa 182  Q
    ||||||||||||||||||||||||||||||||||    
T  42108410 atggtgggaaacaacttccctttcccaaattaaa 42108377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 33968247 - 33968195
Alignment:
Q  123 atctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 175  Q
    |||||||||||||||    ||||||||||||||||||||| ||||||||||||    
T  33968247 atctaatggtcaaaaaatattttcccatggtgggaaacaagttccctttccca 33968195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 183
Target Start/End: Complemental strand, 49287793 - 49287693
Alignment:
Q  83 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaa 182  Q
    |||||||||| || |||||||| | |||||||| ||||| ||||||  ||  |||||| ||||||||| || |||||||||||  |||||| | ||||||    
T  49287793 tggtgttgagagtgtatgataagactatgttctatacttaatctaaccgtttaaattaattttcccatagtaggaaacaactttactttcctatattaaa 49287694  T
Q  183 t 183  Q
    |    
T  49287693 t 49287693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 36750439 - 36750480
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  36750439 tttcccatggtgggaaagaactctcctttcccaaattaaatg 36750480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 27452689 - 27452637
Alignment:
Q  123 atctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 175  Q
    |||||||||||||| ||| |||| ||||||| |||||| | ||||||||||||    
T  27452689 atctaatggtcaaatttaatttttccatggtaggaaactatttccctttccca 27452637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 83 - 182
Target Start/End: Original strand, 12801 - 12900
Alignment:
Q  83 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaa 182  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||| ||| |||||||||||    
T  12801 tggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattaactttcccatggtgggaaacaacttcacttccccaaattaaa 12900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 81 - 182
Target Start/End: Complemental strand, 12292 - 12191
Alignment:
Q  81 tctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaatta 180  Q
    |||| ||||||||||||||||||||| ||||||||||| || |||||| ||||||||||| ||||| ||||||||||||||||||| |||||||||||||    
T  12292 tctgatgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaattaattttctcatggtgggaaacaacttctctttcccaaatta 12193  T
Q  181 aa 182  Q
    ||    
T  12192 aa 12191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 81 - 186
Target Start/End: Complemental strand, 27763521 - 27763416
Alignment:
Q  81 tctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaatta 180  Q
    ||||||||||||||||| |||||||| ||||||||||| || |||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  27763521 tctggtgttgagtgtctttgataaaaatatgttctctatttaatctaacggtcaaaattagttttcccttggtgggaaacaacttcccttccccaaatta 27763422  T
Q  181 aatgtc 186  Q
    ||||||    
T  27763421 aatgtc 27763416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 24126018 - 24125977
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  24126018 tttcccatggtgggaaacaactcccctttcccaaattaaatg 24125977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 24126720 - 24126761
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||||| |||||||||||| |||||||||||||||||||    
T  24126720 tttcccatgatgggaaacaactcccctttcccaaattaaatg 24126761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 3542860 - 3542819
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  3542860 tttcccatggtgggaaaaaactctcctttcccaaattaaatg 3542819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 3543065 - 3543106
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  3543065 tttcccatggtgggaaaaaactctcctttcccaaattaaatg 3543106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 7193384 - 7193343
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  7193384 tttcccatggtgggaaagaactctcctttcccaaattaaatg 7193343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 22582481 - 22582522
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  22582481 tttcccatggtgggaaagaactctcctttcccaaattaaatg 22582522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 22587312 - 22587353
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  22587312 tttcccatggtgggaaagaactctcctttcccaaattaaatg 22587353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 33479742 - 33479701
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  33479742 tttcccatggtgggaaataactctcctttcccaaattaaatg 33479701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 33480630 - 33480671
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  33480630 tttcccatggtgggaaagaactctcctttcccaaattaaatg 33480671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 25371235 - 25371183
Alignment:
Q  123 atctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 175  Q
    |||||||||||||||    ||||||||||||||||||||| ||| ||||||||    
T  25371235 atctaatggtcaaaaaatattttcccatggtgggaaacaagttcactttccca 25371183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 8e-34; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 82 - 175
Target Start/End: Complemental strand, 4554764 - 4554671
Alignment:
Q  82 ctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||| || |||||||||    
T  4554764 ctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagctttctcatggtggaaaacaattttcctttccca 4554671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 83 - 184
Target Start/End: Original strand, 4555331 - 4555432
Alignment:
Q  83 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaa 182  Q
    |||||||||||||||| ||||||||||||||||| |||||||| || | |||||||||| ||||||||||| ||||||||||||||||||||| | ||||    
T  4555331 tggtgttgagtgtctacgataaaagtatgttctccactttatccaacgttcaaaattagctttcccatggtaggaaacaacttccctttcccatactaaa 4555430  T
Q  183 tg 184  Q
    ||    
T  4555431 tg 4555432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 110 - 175
Target Start/End: Original strand, 26712357 - 26712422
Alignment:
Q  110 tgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 175  Q
    |||||| ||||| |||| ||||| |||||||| |||||||||||||||||||||||||||||||||    
T  26712357 tgttctttacttgatctgatggttaaaattagctttcccatggtgggaaacaacttccctttccca 26712422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 110 - 175
Target Start/End: Original strand, 26982095 - 26982160
Alignment:
Q  110 tgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 175  Q
    |||||| ||||| |||| ||||| |||||||| |||||||||||||||||||||||||||||||||    
T  26982095 tgttctttacttgatctgatggttaaaattagctttcccatggtgggaaacaacttccctttccca 26982160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 175
Target Start/End: Original strand, 6805899 - 6805991
Alignment:
Q  83 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 175  Q
    |||||||||  ||||||||||||| |||||||| |  |  |||| ||||| |||||||||||||||||||||||||||   ||||||||||||    
T  6805899 tggtgttgatggtctatgataaaattatgttcttttgtaaatctgatggttaaaattagttttcccatggtgggaaactctttccctttccca 6805991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 85 - 175
Target Start/End: Complemental strand, 4789624 - 4789534
Alignment:
Q  85 gtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 175  Q
    |||||||| || ||| ||||||  |||||||| | || ||||||||||||| | ||  |||||||||||||||||||||| ||||||||||    
T  4789624 gtgttgagggtttataataaaatcatgttctccatttgatctaatggtcaagaataactttcccatggtgggaaacaactcccctttccca 4789534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 166
Target Start/End: Original strand, 6804775 - 6804858
Alignment:
Q  83 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttc 166  Q
    |||||||||| | |||||||||   | |||||| ||| | |||||||||||||||||   ||||||||||||||||||||||||    
T  6804775 tggtgttgagagactatgataactatgtgttctttacctaatctaatggtcaaaattgactttcccatggtgggaaacaacttc 6804858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 183
Target Start/End: Original strand, 17767546 - 17767633
Alignment:
Q  96 ctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaat 183  Q
    ||||||||||| |||||||| || || ||||||||||| ||||    |||||||||||||||||||||   ||||||||| |||||||    
T  17767546 ctatgataaaaatatgttctttagttaatctaatggtctaaatctactttcccatggtgggaaacaacgatcctttcccatattaaat 17767633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 9142093 - 9142052
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||||||||||||||||||||||||||||| | ||||||    
T  9142093 tttcccatggtgggaaacaacttccctttcccatactaaatg 9142052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 97 - 184
Target Start/End: Original strand, 8040400 - 8040487
Alignment:
Q  97 tatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||| || ||||||| ||| || ||||||||| ||  ||||  ||||||| ||||||||| || || ||||||||||||||||||    
T  8040400 tatgatagaaatatgttccctatttaatctaatggacatgattaactttcccacggtgggaaagaaatttcctttcccaaattaaatg 8040487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 184
Target Start/End: Original strand, 39167388 - 39167483
Alignment:
Q  89 tgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    |||||||||||||||| | |||| ||| || || |||||||||| ||||    |||||||||| ||||||| || |  ||||||||||||||||||    
T  39167388 tgagtgtctatgataacattatggtctatatttgatctaatggtaaaaaaatattttcccatgatgggaaagaagtctcctttcccaaattaaatg 39167483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 2319312 - 2319271
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  2319312 tttcccatggtgggaaaaaactagcctttcccaaattaaatg 2319271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 8204166 - 8204125
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  8204166 tttcccatggtgggaaagaactctcctttcccaaattaaatg 8204125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 15184019 - 15184060
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  15184019 tttcccatggtgggaaagaactctcctttcccaaattaaatg 15184060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 33002818 - 33002859
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  33002818 tttcccatggtgggaaagaactctcctttcccaaattaaatg 33002859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 39950450 - 39950409
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  39950450 tttcccatggtgggaaagaactctcctttcccaaattaaatg 39950409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 175
Target Start/End: Original strand, 42651581 - 42651613
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttccca 175  Q
    ||||| |||||||||||||||||||||||||||    
T  42651581 tttcctatggtgggaaacaacttccctttccca 42651613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 83 - 175
Target Start/End: Complemental strand, 46757530 - 46757438
Alignment:
Q  83 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 175  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||   |||| |||||||| |||||||| | ||||||||    
T  46757530 tggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttactttctcatggtggaaaacaactcctctttccca 46757438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 83 - 184
Target Start/End: Complemental strand, 27599317 - 27599216
Alignment:
Q  83 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaa 182  Q
    |||||||||||||||||||||| | | |||||  ||||| |||||||||||||| |||  |||||||||||||||||||||| ||||||||||  |||||    
T  27599317 tggtgttgagtgtctatgataagaatgtgttcattacttaatctaatggtcaaatttaactttcccatggtgggaaacaactcccctttcccattttaaa 27599218  T
Q  183 tg 184  Q
    ||    
T  27599217 tg 27599216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 81 - 184
Target Start/End: Original strand, 46759202 - 46759305
Alignment:
Q  81 tctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaatta 180  Q
    ||||||||| ||| | ||| ||| ||||||||||||||||||||||||||||||| ||||| ||| | ||| |||||||||||| |||||||||| | ||    
T  46759202 tctggtgttaagtatgtataatagaagtatgttctctactttatctaatggtcaagattagctttgctatgatgggaaacaactcccctttcccatacta 46759301  T
Q  181 aatg 184  Q
    ||||    
T  46759302 aatg 46759305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 83 - 184
Target Start/End: Original strand, 27600037 - 27600138
Alignment:
Q  83 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaa 182  Q
    |||||||||| ||||||||||| | | |||||  ||||| ||||| |||||||| |||  |||||||||||||||||||||| ||||||||||  |||||    
T  27600037 tggtgttgagagtctatgataagaatgtgttcattacttaatctagtggtcaaatttaactttcccatggtgggaaacaactcccctttcccattttaaa 27600136  T
Q  183 tg 184  Q
    ||    
T  27600137 tg 27600138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 86 - 175
Target Start/End: Complemental strand, 12732350 - 12732261
Alignment:
Q  86 tgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 175  Q
    ||||||| ||||||||||||| |||||||| ||| | ||||||||||||| |||   ||||||||||||||||||   ||||||||||||    
T  12732350 tgttgagagtctatgataaaactatgttctttacatgatctaatggtcaatatttactttcccatggtgggaaactctttccctttccca 12732261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 175
Target Start/End: Original strand, 35771201 - 35771293
Alignment:
Q  83 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 175  Q
    |||||||||| || ||| |||| | |||| ||| ||||| ||||||  ||  ||||||| |||||||||||||||||||||||  ||||||||    
T  35771201 tggtgttgagagtgtataataagactatgctctatacttaatctaaccgtttaaattagctttcccatggtgggaaacaactttgctttccca 35771293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 143 - 182
Target Start/End: Original strand, 44909361 - 44909400
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaa 182  Q
    ||||||||||||||||| ||||| ||||||||||||||||    
T  44909361 tttcccatggtgggaaaaaacttacctttcccaaattaaa 44909400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 127 - 182
Target Start/End: Complemental strand, 45887341 - 45887286
Alignment:
Q  127 aatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaa 182  Q
    |||||||||||  || ||||||||||||||||| ||||  ||||||||||||||||    
T  45887341 aatggtcaaaaaaagctttcccatggtgggaaaaaactagcctttcccaaattaaa 45887286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 147 - 182
Target Start/End: Complemental strand, 46756312 - 46756277
Alignment:
Q  147 ccatggtgggaaacaacttccctttcccaaattaaa 182  Q
    ||||||||| ||||||||||||||||||||||||||    
T  46756312 ccatggtggaaaacaacttccctttcccaaattaaa 46756277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 143 - 186
Target Start/End: Original strand, 47331955 - 47331998
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatgtc 186  Q
    ||||||||||||||||| ||||  ||||||||||||||||||||    
T  47331955 tttcccatggtgggaaaaaactagcctttcccaaattaaatgtc 47331998  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 668225 - 668184
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  668225 tttcccatggtgggaaagaactctcctttcccaaattaaatg 668184  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 175
Target Start/End: Original strand, 6730162 - 6730191
Alignment:
Q  146 cccatggtgggaaacaacttccctttccca 175  Q
    ||||||||||||||||||||||||||||||    
T  6730162 cccatggtgggaaacaacttccctttccca 6730191  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 7677811 - 7677852
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  7677811 tttcccatggtgggaaagaactctcctttcccaaattaaatg 7677852  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 17145668 - 17145627
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  17145668 tttcccatggtgggaaagaactctcctttcccaaattaaatg 17145627  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 37468956 - 37468915
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  37468956 tttcccatggtgggaaagaactctcctttcccaaattaaatg 37468915  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 37469007 - 37469048
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  37469007 tttcccatggtgggaaagaactctcctttcccaaattaaatg 37469048  T

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Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 38778900 - 38778859
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  38778900 tttcccatggtgggaaagaactctcctttcccaaattaaatg 38778859  T

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Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 38779565 - 38779606
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  38779565 tttcccatggtgggaaagaactctcctttcccaaattaaatg 38779606  T

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Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 41194559 - 41194518
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  41194559 tttcccatggtgggaaagaactctcctttcccaaattaaatg 41194518  T

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Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 45887982 - 45888023
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  45887982 tttcccatggtgggaaaaaactagcctttcccaaattaaatg 45888023  T

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Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 48259804 - 48259861
Alignment:
Q  127 aatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    |||||||| ||  |||||||||||||||||||| ||||  | ||||||||||||||||    
T  48259804 aatggtcagaaaaagttttcccatggtgggaaaaaactaacatttcccaaattaaatg 48259861  T

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Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 175
Target Start/End: Complemental strand, 9122692 - 9122664
Alignment:
Q  147 ccatggtgggaaacaacttccctttccca 175  Q
    |||||||||||||||||||||||||||||    
T  9122692 ccatggtgggaaacaacttccctttccca 9122664  T

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Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 175
Target Start/End: Complemental strand, 24995898 - 24995866
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttccca 175  Q
    |||||||||||||||||||||| ||||||||||    
T  24995898 tttcccatggtgggaaacaactcccctttccca 24995866  T

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Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 175
Target Start/End: Original strand, 24996685 - 24996717
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttccca 175  Q
    |||||||||||||||||||||| ||||||||||    
T  24996685 tttcccatggtgggaaacaactcccctttccca 24996717  T

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Target: scaffold0071 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 96 - 155
Target Start/End: Original strand, 11873 - 11932
Alignment:
Q  96 ctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgg 155  Q
    ||||||||||| |||||||||||||| ||||||||||||| ||||  |||||||||||||    
T  11873 ctatgataaaaatatgttctctacttaatctaatggtcaagattaactttcccatggtgg 11932  T

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Target: scaffold0119 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 29938 - 29990
Alignment:
Q  121 ttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcc 173  Q
    |||||||| ||| ||||||||||||||||| |||| ||||||||| |||||||    
T  29938 ttatctaacggttaaaattagttttcccatagtggaaaacaactttcctttcc 29990  T

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Target: scaffold0119; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 36620 - 36664
Alignment:
Q  121 ttatctaatggtcaaaattagttttcccatggtgggaaacaactt 165  Q
    ||||||||  |||||||||||||||||||| ||||||||||||||    
T  36620 ttatctaacagtcaaaattagttttcccatagtgggaaacaactt 36664  T

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Target: scaffold2003 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold2003
Description:

Target: scaffold2003; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 175
Target Start/End: Original strand, 486 - 565
Alignment:
Q  96 ctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 175  Q
    ||||||||||||| || ||| || || ||||| |||| ||||||   ||| |||||||||||||||||| ||||||||||    
T  486 ctatgataaaagtgtgctctttatttgatctagtggttaaaatttacttttccatggtgggaaacaactcccctttccca 565  T

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Target: scaffold0311 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 162 - 203
Alignment:
Q  143 tttcccatggtgggaaacaacttccctttcccaaattaaatg 184  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  162 tttcccatggtgggaaagaactctcctttcccaaattaaatg 203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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