View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_5 (Length: 665)
Name: NF3772_low_5
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 459; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 165 - 647
Target Start/End: Original strand, 47385438 - 47385920
Alignment:
| Q |
165 |
tggtggttggaatttccttgatgctctttcaaataatatatatcaaaacacatggaaaaaagaaaccacaacaaccacctatgtgcatcctcaacagaaa |
264 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47385438 |
tggtggttggaatttccttgatggtctttcaaataatatatatcaaaacacatggaaaaaagaaaccacaacaaccacctatgtgcatcctcaacagaaa |
47385537 |
T |
|
| Q |
265 |
cgttcatctttggctatgagtccaaagagccttgaattatgtacggagaatcttggtaatgagagtggcactgacattgtagaaaatgacatgttgttgt |
364 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
47385538 |
cgttcctctttggctatgagtccaaagagccttgaattatgtacggagaatcttggtaatgaaagtggcactgacattgtagaaaatgacatgttgttgt |
47385637 |
T |
|
| Q |
365 |
cttcaatgggagcaatggaggagcaaagagaaccttgtagtccagtattaatagctactaagaaaccaaaaatccataattttccaccacctttgacaac |
464 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47385638 |
cttcaatgggagcaatggaggagcaaagagaaccttgtagtccagtattaatagctactaagaaaccaaaaatccataattttccaccacctttgacaac |
47385737 |
T |
|
| Q |
465 |
gatgagaggatcagaatctcttcgtgttagaccccaccgtgaagatgggaggttagtaattgaagtcacaaaggtcccaccaagtacctcatgttttcaa |
564 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
47385738 |
gatgagaggatcagaatctcttcgtgttagaccccaccgtgaagatggtaggttagtaattgaagtcacaaaggtcccaccaagtacatcatgttttcaa |
47385837 |
T |
|
| Q |
565 |
gctgatagaagccatggccgtcttcgtctctgttttttgacaaatgagactacaagttttgacccggaagaagaagaggatgt |
647 |
Q |
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| T |
47385838 |
gctgatagaagccatggccgtcttcgtctctgttttttgacaaatgagactacaagttttgacccggaacaagaagaggatgt |
47385920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 165 - 639
Target Start/End: Complemental strand, 47373491 - 47373020
Alignment:
| Q |
165 |
tggtggttggaatttccttgatgctctttcaaataatatatatcaaaacacatggaaaaaagaaaccacaacaaccacctatgtgcatcctcaacagaaa |
264 |
Q |
| |
|
|||||||||||| |||||||| |||||||| ||||||||| ||||||||||| |||||||||||||||||| |||||||| | | ||||| ||||| |
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| T |
47373491 |
tggtggttggaacttccttgacgctctttccaataatatagctcaaaacacatcaaaaaaagaaaccacaacagccacctatcttccccctcagcagaag |
47373392 |
T |
|
| Q |
265 |
cgttcatctttggctatgagtccaaagagccttgaattatgtacggagaatcttggtaatgagagtggcactgacattgtagaaaatgacatgttgttgt |
364 |
Q |
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|||| ||||||| | ||||||||||||| |||||||| || || || |||||||| || |||||||| ||||||||||||||||| ||| | ||||||| |
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| T |
47373391 |
tgttcctctttggttctgagtccaaagagtcttgaattgtgcacagaaaatcttggcaacgagagtggtactgacattgtagaaaacgacttattgttgt |
47373292 |
T |
|
| Q |
365 |
cttcaatgggagcaatggaggagcaaagagaaccttgtagtccagtattaatagctactaagaaaccaaaaatccataattttccaccacctttgacaac |
464 |
Q |
| |
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||||||||||| |||||||| |||||| |||||||| || ||| ||| ||||||||||||| |||| || ||||||||||||||||||||||| |
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| T |
47373291 |
cttcaatgggaacaatggag---caaagacaaccttgttctcaagttttagcagctactaagaaagtgaaaactcagaattttccaccacctttgacaac |
47373195 |
T |
|
| Q |
465 |
gatgagaggatcagaatctcttcgtgttagaccccaccgtgaagatgggaggttagtaattgaagtcacaaaggtcccaccaagtacctcatgttttcaa |
564 |
Q |
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|| ||||||||||||||| ||| ||||||| ||||||||| |||||| ||||| || ||||||||||| ||||||||||||||||| || || |||||| |
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| T |
47373194 |
cataagaggatcagaatcttttcatgttagaacccaccgtggagatggaaggttggtgattgaagtcactaaggtcccaccaagtacttcttgctttcaa |
47373095 |
T |
|
| Q |
565 |
gctgatagaagccatggccgtcttcgtctctgttttttgacaaatgagactacaagttttgacccggaagaagaa |
639 |
Q |
| |
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|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47373094 |
gctgatagaagccatggctgtcttcgtctctattttttgacaaatgagactacaagttttgacccggaagaagaa |
47373020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 47385291 - 47385360
Alignment:
| Q |
18 |
gttaccttctccaaaacaagtccctactcctcaatccattgatttagccttcaaaacttgtttctttgat |
87 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47385291 |
gttaccttctccaaaacaagtccctactcctcaatccattgatttagccttcaaaacttgtttctttgat |
47385360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 47373633 - 47373566
Alignment:
| Q |
20 |
taccttctccaaaacaagtccctactcctcaatccattgatttagccttcaaaacttgtttctttgat |
87 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||| |
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| T |
47373633 |
taccttctccaaaacaagtccctactcctcaatctgttgatttagccttcaaatcttgtttgtttgat |
47373566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 502 - 573
Target Start/End: Original strand, 20976602 - 20976673
Alignment:
| Q |
502 |
cgtgaagatgggaggttagtaattgaagtcacaaaggtcccaccaagtacctcatgttttcaagctgataga |
573 |
Q |
| |
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||||||||||| ||||| | ||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
20976602 |
cgtgaagatggaaggttggcaattgaagtaaaaaaggtcccaccaagtacctcatgttttcaagctgataga |
20976673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 20976474 - 20976520
Alignment:
| Q |
34 |
caagtccctactcctcaatccattgatttagccttcaaaacttgttt |
80 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
20976474 |
caagtccctacttctcaatccattgatttagccttcaaaacatgttt |
20976520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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