View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3772_low_51 (Length: 395)
Name: NF3772_low_51
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_51 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 17 - 378
Target Start/End: Original strand, 164369 - 164730
Alignment:
| Q |
17 |
atgaatcgagagtttattctatctgattttcacctttgttttttacagctaaaatgtggtgttattgtcggttagtatacatgccgatgtcttacttgta |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
164369 |
atgaatcgagagtttattctatctgattttcacctttgttttttacagctaaaatgtggtgttattgtcggttagtatacatgccgatgtcttacttgta |
164468 |
T |
|
| Q |
117 |
cgggaagaggtttgtaggtcctatcacaccactcatcttacagttgagagaagaactccatacccaaccttatgaaaaaactaattggacgaaatcacgc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
164469 |
cgggaagaggtttgtaggtcctatcacaccactcatcttacagttgagagaagaactccatacccaaccttatgaaaaaactaattggacgaaatcacgt |
164568 |
T |
|
| Q |
217 |
cacctatgtgcaaaggttagaatctttatctttaatttatcacaatgtgtgaaattacacatcctttttaacataggagggataatgatccattttatgt |
316 |
Q |
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|
||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
164569 |
cacctatgtgcaaaggttagagtctttatctttaattgatcacaatgtgtgaaattacacatcctttttaacataggagggataatgatccattttatgt |
164668 |
T |
|
| Q |
317 |
ctcataggaagatctttactatccccatcctttgatacaagatctgatatgggatagcttat |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
164669 |
ctcataggaagatctttactatccccatcctttgatacaagatctgatatgggatagcttat |
164730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 62 - 378
Target Start/End: Original strand, 103448 - 103770
Alignment:
| Q |
62 |
cagctaaaatgtggtgttattgtcggttagtatacatgccgatgtcttacttgtacgggaagaggtttgtaggtcctatcacaccactcatcttacagtt |
161 |
Q |
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||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |
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| T |
103448 |
cagctaaaatgtggtgttattgtcgattggtatacatgcctatgtcttacttgtacgggaagagatttgtgggtccgatcacaccactcatcttacagtt |
103547 |
T |
|
| Q |
162 |
gagagaagaactccatacccaaccttatgaaaaaactaattggacgaaatcacgccacctatgtgcaaaggttagaatctttatctttaatttatcacaa |
261 |
Q |
| |
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|||||||||||||||||| || ||||||||||||| ||| |||||||||||||| ||||||||||||||||| ||| || || ||||||||| | |||| |
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| T |
103548 |
gagagaagaactccatactcagccttatgaaaaaattaactggacgaaatcacgtcacctatgtgcaaaggtgagagtcattgtctttaattgtttacaa |
103647 |
T |
|
| Q |
262 |
tgtgtgaaattacacatcctttttaac------ataggagggataatgatccattttatgtctcataggaagatctttactatccccatcctttgataca |
355 |
Q |
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|||||| | |||||| |||| |||| | |||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
103648 |
tgtgtggatttacacttcctctttatcatgataataggagggataatgatctattttatgtctcacaggaagatatttactatccccatcctttgataca |
103747 |
T |
|
| Q |
356 |
agatctgatatgggatagcttat |
378 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
103748 |
agatctgatatgggatagcttat |
103770 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 133; Significance: 5e-69; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 34 - 376
Target Start/End: Complemental strand, 92882 - 92540
Alignment:
| Q |
34 |
tctatctgattttcacctttgtttt-ttacagctaaaatgtggtgttattgtcggttagtatacatgccgatgtcttacttgtacgggaagaggtttgta |
132 |
Q |
| |
|
||||||||||||||| || |||| || |||||||||||||||| |||||||| | |||||| | |||||||||||||||||||| ||||||||||| |
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| T |
92882 |
tctatctgattttcatctaagtttaatttcagctaaaatgtggtgctattgtcgactggtatacttaccgatgtcttacttgtacggaaagaggtttgtc |
92783 |
T |
|
| Q |
133 |
ggtcctatcacaccactcatcttacagttgagagaagaactccatacccaaccttatgaaaaaactaattggacgaaatcacgccacctatgtgcaaagg |
232 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||| ||||| |||||||||| ||| ||| |||| ||| ||||||||||||||||||||| |
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| T |
92782 |
ggtccaatcacaccactcgtcttacagttgagagaagaacttcatactcaaccttatggtaaagttaactggaaaaaagcacgccacctatgtgcaaagg |
92683 |
T |
|
| Q |
233 |
ttagaatctttatctttaatttatcacaatgtgtgaaattacacatcctttttaacataggagggataatgatccattttatgtctc-ataggaagatct |
331 |
Q |
| |
|
| || ||||| ||| ||||| || ||| ||| |||| |||||||| || |||||| || ||||||||||| ||||||||||| ||| | |||||||| | |
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| T |
92682 |
tgaggctctttgtctctaattcatgacagtgtatgaatttacacat-ctctttaacgtatgagggataatgttccattttatg-ctcaacaggaagatat |
92585 |
T |
|
| Q |
332 |
ttactatccccatcctttgatacaagatctgatatgggatagctt |
376 |
Q |
| |
|
|||||||| |||||||||||||||||| | |||||||||||||| |
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| T |
92584 |
ctactatcctcatcctttgatacaagatttaatatgggatagctt |
92540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 5e-41; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 60 - 233
Target Start/End: Complemental strand, 5670533 - 5670360
Alignment:
| Q |
60 |
tacagctaaaatgtggtgttattgtcggttagtatacatgccgatgtcttacttgtacgggaagaggtttgtaggtcctatcacaccactcatcttacag |
159 |
Q |
| |
|
|||||||| ||||| |||||||||||| || ||||||||||| |||||||||||||| |||||||||||||| ||||| || ||||||||||||||| || |
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|
| T |
5670533 |
tacagctagaatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatgggaagaggtttgtcggtccaataacaccactcatcttaaag |
5670434 |
T |
|
| Q |
160 |
ttgagagaagaactccatacccaaccttatgaaaaaactaattggacgaaatcacgccacctatgtgcaaaggt |
233 |
Q |
| |
|
|||||||||||||||| ||| ||| |||||||||| ||||||| ||| |||||| |||||||||||||| |
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| T |
5670433 |
ttgagagaagaactccttacagaacattatgaaaaagttaattggcaaaaagtacgccatctatgtgcaaaggt |
5670360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 61 - 233
Target Start/End: Complemental strand, 5722646 - 5722474
Alignment:
| Q |
61 |
acagctaaaatgtggtgttattgtcggttagtatacatgccgatgtcttacttgtacgggaagaggtttgtaggtcctatcacaccactcatcttacagt |
160 |
Q |
| |
|
||||||| ||||| |||||||||||| || ||||||||||| |||||||||||||| || ||||||||||| ||||| ||||||||| | |||||| ||| |
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|
| T |
5722646 |
acagctagaatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatggaaagaggtttgtcggtccaatcacaccattgatcttaaagt |
5722547 |
T |
|
| Q |
161 |
tgagagaagaactccatacccaaccttatgaaaaaactaattggacgaaatcacgccacctatgtgcaaaggt |
233 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||| ||||||| ||| ||| ||||||||||||||||| |
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|
| T |
5722546 |
tgagagaagaactccttacagaaccttatgaaaaagttaattggcaaaaagtacgtcacctatgtgcaaaggt |
5722474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 61 - 233
Target Start/End: Complemental strand, 5692306 - 5692134
Alignment:
| Q |
61 |
acagctaaaatgtggtgttattgtcggttagtatacatgccgatgtcttacttgtacgggaagaggtttgtaggtcctatcacaccactcatcttacagt |
160 |
Q |
| |
|
||||||| ||||| |||||||||||| || ||||||||||| |||||||||||||| || ||||||||||| ||||| ||||||||| | | |||| ||| |
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|
| T |
5692306 |
acagctagaatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatggaaagaggtttgtcggtccaatcacaccattgaccttaaagt |
5692207 |
T |
|
| Q |
161 |
tgagagaagaactccatacccaaccttatgaaaaaactaattggacgaaatcacgccacctatgtgcaaaggt |
233 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||| ||||||| ||| |||||| |||||||||||||| |
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|
| T |
5692206 |
tgagagaagaactccttacagaaccttatgaaaaagttaattggcaaaaagtacgccatctatgtgcaaaggt |
5692134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 5692005 - 5691949
Alignment:
| Q |
322 |
aggaagatctttactatccccatcctttgatacaagatctgatatgggatagcttat |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
5692005 |
aggaagatctttactatccccatcctttgatacaagatctaatatgggatagtttat |
5691949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 5670128 - 5670072
Alignment:
| Q |
322 |
aggaagatctttactatccccatcctttgatacaagatctgatatgggatagcttat |
378 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
5670128 |
aggaagatctttactatccacatcctttgatacaagatctaatatgggatagtttat |
5670072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 5722392 - 5722336
Alignment:
| Q |
322 |
aggaagatctttactatccccatcctttgatacaagatctgatatgggatagcttat |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
5722392 |
aggaagatctttactatccccatcctttgatacaagatctattatgggatagtttat |
5722336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 66 - 233
Target Start/End: Original strand, 13052377 - 13052544
Alignment:
| Q |
66 |
taaaatgtggtgttattgtcggttagtatacatgccgatgtcttacttgtacgggaagaggtttgtaggtcctatcacaccactcatcttacagttgaga |
165 |
Q |
| |
|
||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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|
| T |
13052377 |
taaaatgtggtgttattgtcgattgacatacatgcctatgtcttacttgtacgggaagaggtttgtgggtcgaatcacaccactcatcttacagttgaga |
13052476 |
T |
|
| Q |
166 |
gaagaactccatacccaaccttatgaaaaaactaattggacgaaatcacgccacctatgtgcaaaggt |
233 |
Q |
| |
|
|||||| | |||| |||||||| |||||| | ||||| |||||||| |||| |||||||||||| |
|
|
| T |
13052477 |
gaagaaattcataatcaaccttacgaaaaagttgattggttcaaatcacgtcaccaatgtgcaaaggt |
13052544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 287 - 376
Target Start/End: Original strand, 13052576 - 13052671
Alignment:
| Q |
287 |
acataggagggataa-tgatccattttatgtc---tcata--ggaagatctttactatccccatcctttgatacaagatctgatatgggatagctt |
376 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
13052576 |
acataggagggataaatgatccattttatgtcgtctcatacaggaagatctttactatcctcatcctttgatacaagatctgatatgggatagctt |
13052671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 62 - 205
Target Start/End: Complemental strand, 12137849 - 12137706
Alignment:
| Q |
62 |
cagctaaaatgtggtgttattgtcggttagtatacatgccgatgtcttacttgtacgggaagaggtttgtaggtcctatcacaccactcatcttacagtt |
161 |
Q |
| |
|
||||||||||||||||||| ||||| || ||||||||||| |||||||||||||| || ||||| ||||| ||| | |||||||| |||||||||||||| |
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|
| T |
12137849 |
cagctaaaatgtggtgttactgtcgattggtatacatgcctatgtcttacttgtatggaaagagatttgtgggttcaatcacaccgctcatcttacagtt |
12137750 |
T |
|
| Q |
162 |
gagagaagaactccatacccaaccttatgaaaaaactaattgga |
205 |
Q |
| |
|
||||||||||||| |||| ||||||||| |||| |||||||| |
|
|
| T |
12137749 |
gagagaagaactctatactgaaccttatgcaaaagttaattgga |
12137706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 1942043 - 1941994
Alignment:
| Q |
98 |
tgccgatgtcttacttgtacgggaagaggtttgtaggtcctatcacacca |
147 |
Q |
| |
|
|||| |||| |||||||||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
1942043 |
tgccaatgtgttacttgtacggaaagaggtttgttggtccaatcacacca |
1941994 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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