View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3772_low_53 (Length: 390)

Name: NF3772_low_53
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3772_low_53
NF3772_low_53
[»] chr4 (4 HSPs)
chr4 (28-175)||(11960667-11960817)
chr4 (321-390)||(37711141-37711210)
chr4 (321-390)||(54935246-54935310)
chr4 (321-390)||(54935070-54935135)
[»] chr6 (5 HSPs)
chr6 (174-257)||(33040656-33040739)
chr6 (321-390)||(9721141-9721205)
chr6 (321-359)||(9719233-9719271)
chr6 (321-390)||(9719034-9719098)
chr6 (321-361)||(23090998-23091038)
[»] chr5 (4 HSPs)
chr5 (24-149)||(39984476-39984606)
chr5 (321-359)||(8551621-8551659)
chr5 (319-361)||(12600703-12600745)
chr5 (321-390)||(14245223-14245287)
[»] chr1 (2 HSPs)
chr1 (321-390)||(26324017-26324086)
chr1 (112-176)||(50135026-50135090)
[»] scaffold0026 (1 HSPs)
scaffold0026 (320-363)||(1174-1217)
[»] chr8 (1 HSPs)
chr8 (321-384)||(4247699-4247761)
[»] chr3 (2 HSPs)
chr3 (321-363)||(6803400-6803442)
chr3 (321-361)||(42772047-42772087)
[»] chr7 (3 HSPs)
chr7 (321-362)||(28074106-28074147)
chr7 (321-361)||(25887195-25887235)
chr7 (24-103)||(45843043-45843123)
[»] chr2 (1 HSPs)
chr2 (321-361)||(36046402-36046442)


Alignment Details
Target: chr4 (Bit Score: 84; Significance: 8e-40; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 28 - 175
Target Start/End: Original strand, 11960667 - 11960817
Alignment:
Q  28 tttagaggtgccatggaaggaagcttgaaagtttggtaacg---gtgactaacaaagtaaacacgaggggaggtaaatgnnnnnnncaaactaaaggggg 124  Q
    |||||||||||||||||||||| ||||||||||||||||||   |||||||||| |||||||| | |||||||||||||        |||||| ||||||    
T  11960667 tttagaggtgccatggaaggaaccttgaaagtttggtaacgatggtgactaacagagtaaacatgcggggaggtaaatgtttttttaaaactagaggggg 11960766  T
Q  125 tgtgagtgtcattaagtaaaacctcaaggaaggtaaatgcaattttctctt 175  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  11960767 tgtgagtgtcattaagtaaaacctcaagggaggtaaatgtaattttctctt 11960817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 321 - 390
Target Start/End: Original strand, 37711141 - 37711210
Alignment:
Q  321 gtgtgtttggattggaggtttatgaggggaagagaggggagaggagggtttatttttcatttttaaatta 390  Q
    ||||||||||||||  |||||| ||||||||| || ||||| ||||||||| |||||| |||||||||||    
T  37711141 gtgtgtttggattgagggtttaggaggggaagggaagggaggggagggtttgtttttcttttttaaatta 37711210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 390
Target Start/End: Complemental strand, 54935310 - 54935246
Alignment:
Q  321 gtgtgtttggattggaggtttatgaggggaagagaggggagaggagggtttatttttcatttttaaatta 390  Q
    |||||||||||| |  |||||| ||||||||     ||||| ||||||||||||||||||||||||||||    
T  54935310 gtgtgtttggatggagggtttaggaggggaa-----gggaggggagggtttatttttcatttttaaatta 54935246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 390
Target Start/End: Original strand, 54935070 - 54935135
Alignment:
Q  321 gtgtgtttggattggaggtttatgaggggaagagaggggagaggagggtttatttttcatttttaaatta 390  Q
    ||||||||||||||  |||||| ||||||||| |||||    |||||||||| ||||| |||||||||||    
T  54935070 gtgtgtttggattgagggtttaggaggggaagggaggg----ggagggtttacttttcttttttaaatta 54935135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 174 - 257
Target Start/End: Original strand, 33040656 - 33040739
Alignment:
Q  174 ttttattttcgatcaaacttatctcttcctcatgccaactcaaacaataatgtaaataggaaagtcatactgtgttaaagacta 257  Q
    ||||| |||| ||||||||||||||||||||||  ||| ||||||||||||||||||||||||| ||| || ||||||||||||    
T  33040656 ttttagtttccatcaaacttatctcttcctcatatcaattcaaacaataatgtaaataggaaagacatgctatgttaaagacta 33040739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 321 - 390
Target Start/End: Original strand, 9721141 - 9721205
Alignment:
Q  321 gtgtgtttggattggaggtttatgaggggaagagaggggagaggagggtttatttttcatttttaaatta 390  Q
    |||||||||||||| ||||||| ||||||||| ||||||||     ||||||||||||||||||||||||    
T  9721141 gtgtgtttggattgaaggtttaggaggggaagggaggggag-----ggtttatttttcatttttaaatta 9721205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 9719271 - 9719233
Alignment:
Q  321 gtgtgtttggattggaggtttatgaggggaagagagggg 359  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  9719271 gtgtgtttggattgagggtttatgaggggaagagagggg 9719233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 390
Target Start/End: Original strand, 9719034 - 9719098
Alignment:
Q  321 gtgtgtttggattggaggtttatgaggggaagagaggggagaggagggtttatttttcatttttaaatta 390  Q
    ||||||||||||||  |||||| ||||||||| ||||||||     | ||||||||||||||||||||||    
T  9719034 gtgtgtttggattgagggtttaggaggggaagggaggggag-----gatttatttttcatttttaaatta 9719098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 361
Target Start/End: Original strand, 23090998 - 23091038
Alignment:
Q  321 gtgtgtttggattggaggtttatgaggggaagagaggggag 361  Q
    |||||||||||||| ||||||| ||||||||| ||||||||    
T  23090998 gtgtgtttggattgaaggtttaggaggggaagggaggggag 23091038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 24 - 149
Target Start/End: Complemental strand, 39984606 - 39984476
Alignment:
Q  24 caattttagaggtgccatggaaggaagcttgaaagtttggtaac---ggtgactaacaaagtaaacacgaggggaggtaaatg--nnnnnnncaaactaa 118  Q
    |||||||||||||||||||||||||||| |  ||||||||||||   ||||||||||| ||||| || |||||||||||||||         |||| ||     
T  39984606 caattttagaggtgccatggaaggaagcatagaagtttggtaacggtggtgactaacagagtaagcatgaggggaggtaaatgtttttttttcaaattag 39984507  T
Q  119 agggggtgtgagtgtcattaagtaaaacctc 149  Q
    ||||||||| |||||||||||||||||||||    
T  39984506 agggggtgtaagtgtcattaagtaaaacctc 39984476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 8551659 - 8551621
Alignment:
Q  321 gtgtgtttggattggaggtttatgaggggaagagagggg 359  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  8551659 gtgtgtttggattgaaggtttaggaggggaagagagggg 8551621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 361
Target Start/End: Complemental strand, 12600745 - 12600703
Alignment:
Q  319 aagtgtgtttggattggaggtttatgaggggaagagaggggag 361  Q
    |||||||||||||||  ||||||| ||||||||||||||||||    
T  12600745 aagtgtgtttggatttaaggtttaggaggggaagagaggggag 12600703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 390
Target Start/End: Complemental strand, 14245287 - 14245223
Alignment:
Q  321 gtgtgtttggattggaggtttatgaggggaagagaggggagaggagggtttatttttcatttttaaatta 390  Q
    ||||||||||||||  |||||| ||||||||| ||||||||     ||||| ||||||||||||||||||    
T  14245287 gtgtgtttggattgagggtttaggaggggaagggaggggag-----ggtttgtttttcatttttaaatta 14245223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 321 - 390
Target Start/End: Original strand, 26324017 - 26324086
Alignment:
Q  321 gtgtgtttggattggaggtttatgaggggaagagaggggagaggagggtttatttttcatttttaaatta 390  Q
    ||||||||||||||  |||||| ||||||||| |||||||| |||||||||  ||||| |||||||||||    
T  26324017 gtgtgtttggattgagggtttaggaggggaagggaggggaggggagggtttgattttcttttttaaatta 26324086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 50135090 - 50135026
Alignment:
Q  112 aaactaaagggggtgtgagtgtcattaagtaaaacctcaaggaaggtaaatgcaattttctcttt 176  Q
    |||||| |||||||||||||||| || |   ||||||||||| ||||||||| | ||||||||||    
T  50135090 aaactagagggggtgtgagtgtcttttaagcaaacctcaagggaggtaaatgtagttttctcttt 50135026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 363
Target Start/End: Original strand, 1174 - 1217
Alignment:
Q  320 agtgtgtttggattggaggtttatgaggggaagagaggggagag 363  Q
    |||||||||||||||  |||||| ||||||||||||||||||||    
T  1174 agtgtgtttggattgagggtttaggaggggaagagaggggagag 1217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 321 - 384
Target Start/End: Complemental strand, 4247761 - 4247699
Alignment:
Q  321 gtgtgtttggattggaggtttatgaggggaagagaggggagaggagggtttatttttcattttt 384  Q
    |||||||||||||| ||||||| ||||||||| || || ||||||||||||| ||||| |||||    
T  4247761 gtgtgtttggattgaaggtttaggaggggaaggga-ggtagaggagggtttacttttctttttt 4247699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 321 - 363
Target Start/End: Complemental strand, 6803442 - 6803400
Alignment:
Q  321 gtgtgtttggattggaggtttatgaggggaagagaggggagag 363  Q
    |||||||||||||| ||||||| |||||||||||||| |||||    
T  6803442 gtgtgtttggattgaaggtttaggaggggaagagaggagagag 6803400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 361
Target Start/End: Original strand, 42772047 - 42772087
Alignment:
Q  321 gtgtgtttggattggaggtttatgaggggaagagaggggag 361  Q
    |||||||||||||| ||||||| ||||||||| ||||||||    
T  42772047 gtgtgtttggattgaaggtttaagaggggaagggaggggag 42772087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 362
Target Start/End: Original strand, 28074106 - 28074147
Alignment:
Q  321 gtgtgtttggattggaggtttatgaggggaagagaggggaga 362  Q
    |||||||||||||| ||||||| ||||||||| |||||||||    
T  28074106 gtgtgtttggattgaaggtttaggaggggaagggaggggaga 28074147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 361
Target Start/End: Original strand, 25887195 - 25887235
Alignment:
Q  321 gtgtgtttggattggaggtttatgaggggaagagaggggag 361  Q
    ||||||||||||||  |||||||||||||||| ||||||||    
T  25887195 gtgtgtttggattgagggtttatgaggggaagggaggggag 25887235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 45843123 - 45843043
Alignment:
Q  24 caattttagaggtg-ccatggaaggaagcttgaaagtttggtaacggtgactaacaaagtaaacacgaggggaggtaaatg 103  Q
    |||||||| ||||| ||||||||||| | | ||| ||||||||||||| || |||| |||||||| ||| |||||| ||||    
T  45843123 caattttaaaggtggccatggaaggatgttggaatgtttggtaacggtcacaaacatagtaaacatgagtggaggtgaatg 45843043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 361
Target Start/End: Complemental strand, 36046442 - 36046402
Alignment:
Q  321 gtgtgtttggattggaggtttatgaggggaagagaggggag 361  Q
    ||||||||||||||  |||||||||||||||| ||||||||    
T  36046442 gtgtgtttggattgagggtttatgaggggaagggaggggag 36046402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University