View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_54 (Length: 389)
Name: NF3772_low_54
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 175 - 380
Target Start/End: Original strand, 46078091 - 46078296
Alignment:
| Q |
175 |
ttatagcgaaatgtttcatatgaaaattcggtaaattaagttcccataatgtatatatacattatcaaagttgaaaagcaactaggtcaagttgctacat |
274 |
Q |
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| T |
46078091 |
ttatagcgaaatgtttcatatgaaaattcggtaaattaagttcccataatgtatatatacattatcaaagttgaaaagcaactaggtcaagttgctacat |
46078190 |
T |
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| Q |
275 |
taatttaatttccaaatataagttaacatactttggatatgacacaatcaagcacacctttttcttcaaaactccaaaaccaaaatcaaattttgattgt |
374 |
Q |
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| T |
46078191 |
taatttaatttccaaatataagttaacatactttggatatgacacaatcaagcacacctttttcttcaaaactccaaaaccaaaatcaaattttgattgt |
46078290 |
T |
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| Q |
375 |
ctctgc |
380 |
Q |
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|||||| |
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| T |
46078291 |
ctctgc |
46078296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 46077942 - 46078000
Alignment:
| Q |
18 |
acaaatagcatcttctttccatttatgaatcaaacgagacacggattgtgttactctat |
76 |
Q |
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| T |
46077942 |
acaaatagtatcttctttccatttatgaataaaacgagacacggattgtgctactctat |
46078000 |
T |
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