View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_55 (Length: 389)
Name: NF3772_low_55
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_55 |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 19 - 377
Target Start/End: Complemental strand, 27045717 - 27045359
Alignment:
| Q |
19 |
gtattatggtaatactactgtggatggaaaagttgtgttaaaagttagtgagctcaatgaaatgccactctatgaaattgttaagttgatcaaagaggct |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27045717 |
gtattatggtaatactactgtggatggaaaagttgtgttaaaagttagtgagctcaatgaaatgccactctatgaaattgttaagttgatcaaagaggct |
27045618 |
T |
|
| Q |
119 |
aaaaagattgcttcctccactgattatgtcaaaaactcgatcgatcacactccgaagacggagcataagcaagattttagcatggacggtagcggtgcgg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27045617 |
aaaaagattgcttcctccactgattatgtcaaaaactcgatcgatcacactccggagacggagcataagcaagattttagcatggacggtagcggtgcgg |
27045518 |
T |
|
| Q |
219 |
taacgattctgactgagtggaagcatttaggttttgttgatgaaaatagtatagattttggagggtatgaatcagtgaattttgtaccagcaccatgcaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27045517 |
taacgattctgactgagtggaagcatttaggttttgttgatgaaaataatatagattttggagggtatgaatcagtgaattttgtaccagcaccatgcaa |
27045418 |
T |
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| Q |
319 |
catgtttgcgtctttagaagggtgcattttcgcatctcctggtaaacttgatgatgatg |
377 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27045417 |
catgtttgcgtctttggaagggtgcattttcgcatctcctggtaaacttgatgatgatg |
27045359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 52 - 330
Target Start/End: Complemental strand, 27098415 - 27098143
Alignment:
| Q |
52 |
tgtgttaaaagttagtgagctcaatgaaatgccactctatgaaattgttaagttgatcaaagaggctaaaaagattgcttcctccactgattatgtcaaa |
151 |
Q |
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|||||||||||||||||||||| |||||| |||||||||||||||| ||||| | |||| |||| ||||||| ||||||||| ||||||||| ||||||| |
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| T |
27098415 |
tgtgttaaaagttagtgagctcgatgaaaggccactctatgaaattattaagctcatcagagagactaaaaacattgcttccaccactgattttgtcaaa |
27098316 |
T |
|
| Q |
152 |
aactcgatcgatcacactccgaagacggagcataagcaagattttagcatggacggtagcggtgcggtaacgattctgactgagtggaagcatttaggtt |
251 |
Q |
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|| || ||| |||| | |||| | |||| | || | || |||| ||| ||||| |||||| ||||||| |||||||| |||||||||| |
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| T |
27098315 |
aattcaatc---aacacgttggagactaattataacgaggaatcaaggatggtaagtactggtgcagtaacggttctgacagagtggaaacatttaggtt |
27098219 |
T |
|
| Q |
252 |
ttgttgatgaaaatagtatagattttggagggtatgaatcagtgaattttgtaccagcaccatgcaacatgtttgcgtc |
330 |
Q |
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|| |||||| ||| | |||||||||| ||| | ||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
27098218 |
ttcttgatggaaa---tgtagattttggtgggaacgaagcagtgaatttagtaccagcaccatgcaacatgtttgcgtc |
27098143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 39 - 147
Target Start/End: Complemental strand, 27069706 - 27069598
Alignment:
| Q |
39 |
tggatggaaaagttgtgttaaaagttagtgagctcaatgaaatgccactctatgaaattgttaagttgatcaaagaggctaaaaagattgcttcctccac |
138 |
Q |
| |
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|||||| ||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||| |||| |||||| ||||||| ||| ||| | |||| |
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| T |
27069706 |
tggatgcaaaagttgttttaaaagtgagtgagctcgatgaaatgccactctatgaaattgttaagctgattaaagagactaaaaatatttctttcaccac |
27069607 |
T |
|
| Q |
139 |
tgattatgt |
147 |
Q |
| |
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||||||||| |
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| T |
27069606 |
tgattatgt |
27069598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 52 - 330
Target Start/End: Complemental strand, 27105414 - 27105142
Alignment:
| Q |
52 |
tgtgttaaaagttagtgagctcaatgaaatgccactctatgaaattgttaagttgatcaaagaggctaaaaagattgcttcctccactgattatgtcaaa |
151 |
Q |
| |
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||||||||||||||| |||||| |||||| |||||||||||||||| |||| | || | |||| ||||||| ||||||||| ||||||||| | ||||| |
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| T |
27105414 |
tgtgttaaaagttagcgagctcgatgaaaggccactctatgaaattattaacctaataagagagactaaaaacattgcttccaccactgattttatcaaa |
27105315 |
T |
|
| Q |
152 |
aactcgatcgatcacactccgaagacggagcataagcaagattttagcatggacggtagcggtgcggtaacgattctgactgagtggaagcatttaggtt |
251 |
Q |
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|| || ||| | ||| | ||||| | |||| | || | || ||| ||| |||||| |||||| ||||||| |||||||| |||||||||| |
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| T |
27105314 |
aattcaatcaa---cacgttggagacgaattataaagaggaatccaggatgctaagtaccggtgcagtaacggttctgacagagtggaaacatttaggtt |
27105218 |
T |
|
| Q |
252 |
ttgttgatgaaaatagtatagattttggagggtatgaatcagtgaattttgtaccagcaccatgcaacatgtttgcgtc |
330 |
Q |
| |
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|| |||||| |||| |||||||||| ||| ||||| |||||||||| |||||||||||||||||| |||||||||| |
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| T |
27105217 |
ttcttgatggaaatg---tagattttggtgggcatgaagcagtgaatttagtaccagcaccatgcaacttgtttgcgtc |
27105142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 23 - 156
Target Start/End: Complemental strand, 27056613 - 27056480
Alignment:
| Q |
23 |
tatggtaatactactgtggatggaaaagttgtgttaaaagttagtgagctcaatgaaatgccactctatgaaattgttaagttgatcaaagaggctaaaa |
122 |
Q |
| |
|
||||| ||| ||||| | |||| ||| ||||| |||||||| ||||||||||| ||||||||||||||||||||||||||| |||| |||||| |||||| |
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| T |
27056613 |
tatggaaattctactatagatgtaaatgttgttttaaaagtgagtgagctcaacgaaatgccactctatgaaattgttaagctgattaaagagactaaaa |
27056514 |
T |
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| Q |
123 |
agattgcttcctccactgattatgtcaaaaactc |
156 |
Q |
| |
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| T |
27056513 |
atattgctttcattgctgattatgtcacaaactc |
27056480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 27041345 - 27041208
Alignment:
| Q |
19 |
gtattatggtaatactactgtggatggaaaagttgtgttaaaagttagtgagctcaatgaaatgccactctatgaaattgttaagttgatcaaagaggct |
118 |
Q |
| |
|
||||||||| ||| ||||| | |||| ||| ||||| |||||||| ||||||||||| ||||||||||||||||||| ||||| |||| |||||| || |
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| T |
27041345 |
gtattatggaaattctactatagatgtaaatgttgttttaaaagtgagtgagctcaacgaaatgccactctatgaaaccattaagctgattaaagagact |
27041246 |
T |
|
| Q |
119 |
aaaaagattgcttcctccactgattatgtcaaaaactc |
156 |
Q |
| |
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||||| ||||||| | | |||||||||| | |||||| |
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| T |
27041245 |
aaaaatattgctttcactgctgattatgttacaaactc |
27041208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 27062659 - 27062522
Alignment:
| Q |
19 |
gtattatggtaatactactgtggatggaaaagttgtgttaaaagttagtgagctcaatgaaatgccactctatgaaattgttaagttgatcaaagaggct |
118 |
Q |
| |
|
||||||||| ||| |||| | |||| ||||||||| |||||||| ||||| ||| ||||||||||||||||| |||| |||||| |||| |||||| || |
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| T |
27062659 |
gtattatggcaattctaccatagatgcaaaagttgttttaaaagtgagtgaactcgatgaaatgccactctataaaatcgttaagctgattaaagagact |
27062560 |
T |
|
| Q |
119 |
aaaaagattgcttcctccactgattatgtcaaaaactc |
156 |
Q |
| |
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||||| ||||||| | | |||||||||| | |||||| |
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| T |
27062559 |
aaaaatattgctttcactgctgattatgtaagaaactc |
27062522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 27085782 - 27085645
Alignment:
| Q |
19 |
gtattatggtaatactactgtggatggaaaagttgtgttaaaagttagtgagctcaatgaaatgccactctatgaaattgttaagttgatcaaagaggct |
118 |
Q |
| |
|
||||||||| ||| ||| | | |||| ||| ||||| |||||||| |||| |||||| ||||||||||||||||||| ||||| |||| |||||| || |
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|
| T |
27085782 |
gtattatgggaattctattatagatgtaaatgttgttttaaaagtgagtgtgctcaacgaaatgccactctatgaaaccattaagctgattaaagagact |
27085683 |
T |
|
| Q |
119 |
aaaaagattgcttcctccactgattatgtcaaaaactc |
156 |
Q |
| |
|
||||| ||||||| | | |||||||||| | |||||| |
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| T |
27085682 |
aaaaatattgctttcactgctgattatgttacaaactc |
27085645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 327
Target Start/End: Complemental strand, 27062411 - 27062354
Alignment:
| Q |
270 |
tagattttggagggtatgaatcagtgaattttgtaccagcaccatgcaacatgtttgc |
327 |
Q |
| |
|
||||||||||||| ||||||| |||||||||| |||| ||||||||||| ||| |||| |
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|
| T |
27062411 |
tagattttggaggttatgaattagtgaattttctacctgcaccatgcaagatgcttgc |
27062354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 325
Target Start/End: Complemental strand, 19414212 - 19414159
Alignment:
| Q |
272 |
gattttggagggtatgaatcagtgaattttgtaccagcaccatgcaacatgttt |
325 |
Q |
| |
|
||||||||||| | |||| |||| ||||||||| ||||||||||||||||||| |
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|
| T |
19414212 |
gattttggaggatttgaagcagttaattttgtaatagcaccatgcaacatgttt |
19414159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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