View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_56 (Length: 389)
Name: NF3772_low_56
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 6 - 375
Target Start/End: Original strand, 26966451 - 26966825
Alignment:
| Q |
6 |
agtcataactttgattt-aaaaagatagatagatgacagtagtaggttttgggcatcccaattcaaataacagatccaattgtctttgctacttgagtca |
104 |
Q |
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| T |
26966451 |
agtcataactttgattttaaaaagatggatagatcacagtagtaggttttgggcatcccaattcaaataacagatccaattgtctttgctacttgagtca |
26966550 |
T |
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| Q |
105 |
agcaaactcattgatgggaagcaaaattaactacattaattacactattagctatctaaacaaacaactctttgcaagctcagcaaaatagtgaaccaca |
204 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
26966551 |
agcaaactcattcatgggaagcaaaattaactacattaattacactattagctatctaaacaaactactctttgcaagctcagcaaaatagtgaaccaca |
26966650 |
T |
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| Q |
205 |
ttgagatatatgaacttcaaatagtaacataagctcaaaaatatgatacaaagattaaacaattaacatttttgctcataaaatgattatat----nnnn |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26966651 |
ttgagatatatgaacttcaaatagtaacataagctcaaaaatatgatacaaagattaaacaattaacatttttgctcataaaatgattatataaaaaaaa |
26966750 |
T |
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| Q |
301 |
nnnngtagtactaaccggtgaatgacggcaactggaaaaaggggagtgaaaaatgagagagaggaaggaaaaata |
375 |
Q |
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|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26966751 |
agaagtagtactaaccagtgaatgacggcaactggaagaaggggagtgaaaaatgagagagaggaaggaaaaata |
26966825 |
T |
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