View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3772_low_6 (Length: 657)
Name: NF3772_low_6
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 607; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 18 - 648
Target Start/End: Complemental strand, 6486256 - 6485626
Alignment:
| Q |
18 |
acatttattctttagccgcttccggtgacttattatacaccggttcagacagcaagaacattcgtgtgtggaagaatcttcaagaatattgcggattcaa |
117 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6486256 |
acatttattctttagccgcatccggtgacttattatacaccggctcagacagcaagaacattcgtgtgtggaagaatcttcaagaatattgcggattcaa |
6486157 |
T |
|
| Q |
118 |
atccaacagtggactggtgaaagcaatcataatatccggtcaaaagatcttcactggtcaccaagacggtaaaatccgtgtttggaaagtttctctcaag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6486156 |
atccaacagtggactggtgaaagcaatcataatatccggtcaaaagatcttcactggtcaccaagacggtaaaatccgtgtttggaaagtctctctcaag |
6486057 |
T |
|
| Q |
218 |
aaccctagcgttcacaaacgtgccggaacattaccaacactcaaagacatcttcaaaagctcgattaaaccaagcaattatgtcgaggttagaaaacacc |
317 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6486056 |
aaccctagcgttcacaaacgtgctggaacattaccaacactcaaagacatcttcaaaagctcaattaaaccaagcaattatgtcgaggttagaaaacacc |
6485957 |
T |
|
| Q |
318 |
gaactgcattatggatcaaacattcggatgcagtttcatgcctaagcctttctccagacaaaacctacctctactctgcttcatgggacagaaccgtcaa |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6485956 |
gaactgcattatggatcaaacattcggatgcagtttcatgcctaagtctttctccagacaaaacctacctctactctgcttcatgggacagaaccgtcaa |
6485857 |
T |
|
| Q |
418 |
agtttggagaatcgccgattcaaagtgcttggaatccattacttcccatgaggatgcagttaacgccgtcgtttgtggaaacgacggaattgttttctct |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6485856 |
agtttggagaatcgccgattcaaagtgcttggaatccattacttcccatgaggatgcagttaacgccgtcgtttgtggaaacgacggaattgttttctct |
6485757 |
T |
|
| Q |
518 |
ggttcagcagacggaacagttaaagtgtggcgaagagaaccacgtggtaaagcaacaaaacatgtaatggttaaacaacttttaaaacaagaatgtgcag |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6485756 |
ggttcagcagacggaacagttaaagtgtggcgaagagaaccacgtggtaaagcaacaaaacatgtaatggttaaacaacttttaaaacaagaatgtgcag |
6485657 |
T |
|
| Q |
618 |
taactgctttagcaattgacagcacaggttc |
648 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
6485656 |
taactgctttagcaattgacagcacaggttc |
6485626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 6917703 - 6917655
Alignment:
| Q |
47 |
ttattatacaccggttcagacagcaagaacattcgtgtgtggaagaatc |
95 |
Q |
| |
|
||||||||||||||||| || || || ||||||||||| |||||||||| |
|
|
| T |
6917703 |
ttattatacaccggttctgatagtaaaaacattcgtgtttggaagaatc |
6917655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University