View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_60 (Length: 380)
Name: NF3772_low_60
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_60 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 375
Target Start/End: Original strand, 14926183 - 14926539
Alignment:
| Q |
19 |
tataggagtgttgttttgaattgaagtttctttagtattgtgaaagggcatatatcttcctattggtaaaggatccaaagtataaaatcacttggggaag |
118 |
Q |
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| T |
14926183 |
tataggagtgttgttttgaattgaagtttctttagtattgtgaaagggcatatatcttcctattggtaaaggatccaaagtataaaatcacttggggaag |
14926282 |
T |
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| Q |
119 |
tgacataatgattcaaatatttgtaatgcaagcttttgtatatgacgaggagttacttactgaacacaataatgaaatgtgaattggggttnnnnnnngt |
218 |
Q |
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| T |
14926283 |
tgacataatgattcaaatatttgtaatgcaagcttttgtatatgacgaggagttacttactgaacacaataatgaaatgtgaattggggttaaaaaaagt |
14926382 |
T |
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| Q |
219 |
gtccaaataaaatccatcaccccccattgttttgcgtgaaaaagtttacacaaatttagcattcaaagttgtgtttgaagggtcaatatccttcttcctc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14926383 |
gtccaaataaaatccatcaccccccattgttttgcgtgaaaaagtttacacaaatttagcattcaaagttgtgtttgaagggtcaatatccttcttcctc |
14926482 |
T |
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| Q |
319 |
aattacccaaaatatcctcctcactttccctaaacttgcatagtatcctttgcttct |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14926483 |
aattacccaaaatatcctcctcactttccctaaacttgcatagtatcctttgtttct |
14926539 |
T |
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