View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_7 (Length: 647)
Name: NF3772_low_7
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_7 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 21 - 333
Target Start/End: Complemental strand, 22405317 - 22405007
Alignment:
| Q |
21 |
caatcaaatgaaaatgagtctgtagatggaagtattgcgtaatttataataataataatgttgtttgtaactcattcctaaacaatataaatgtttagta |
120 |
Q |
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| T |
22405317 |
caatcaaatgaaaatgagtctttagatggaagtattgcgtaatttataataataataatgttgtttgtaactcattcctaaacaatataaatgtttagta |
22405218 |
T |
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| Q |
121 |
tatcttatggtaattcaatttccttagacttactttcccccgataacatttataataaaaata---atattttagattcattcaataattaattaatgta |
217 |
Q |
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| T |
22405217 |
tatcttatggtaatacaatttcctaagacttac-ttcccccgataacatttataataaaaaaatatatattttagattcattcaa----taattaatgta |
22405123 |
T |
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| Q |
218 |
tctgacctttttataaaccaattactttagttattcaacgaacctcaaaaattgtctttggttataaatgtaaccagaaatagtatttaaactcaatgaa |
317 |
Q |
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||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22405122 |
tctgatatttttataaatcagttactttagttattcaacgaacctcaaaaattgtctttggttataaatgtaaccagaaagagtatttaaactcaatgaa |
22405023 |
T |
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| Q |
318 |
aatatataatactata |
333 |
Q |
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|||||||||||||||| |
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| T |
22405022 |
aatatataatactata |
22405007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 227 - 288
Target Start/End: Complemental strand, 55121245 - 55121183
Alignment:
| Q |
227 |
tttataaaccaattactttagttattcaacgaacctcaaaaattg-tctttggttataaatgt |
288 |
Q |
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|||||||||||| ||| |||||||||||| |||||| |||||||| | |||| |||||||||| |
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| T |
55121245 |
tttataaaccaaatacattagttattcaatgaacctaaaaaattgttttttgtttataaatgt |
55121183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 227 - 334
Target Start/End: Original strand, 53722 - 53829
Alignment:
| Q |
227 |
tttataaaccaattactttagttattcaacgaacctcaaaaattgtctttggttataaatgtaaccagaaatagtatttaaactcaatgaaaatatataa |
326 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| | |
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| T |
53722 |
tttataaaccagttactttagttattcaacgaacctcaaaagttgtctttggttataaatgtaacgagaaagagtatttatactcaatgaaaatatatta |
53821 |
T |
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| Q |
327 |
tactataa |
334 |
Q |
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|||||||| |
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| T |
53822 |
tactataa |
53829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 227 - 334
Target Start/End: Complemental strand, 40919373 - 40919266
Alignment:
| Q |
227 |
tttataaaccaattactttagttattcaacgaacctcaaaaattgtctttggttataaatgtaaccagaaatagtatttaaactcaatgaaaatatataa |
326 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| | |
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| T |
40919373 |
tttataaaccagttactttagttattcaacgaacctcaaaagttgtctttggttataaatgtaacgagaaagagtatttatactcaatgaaaatatatta |
40919274 |
T |
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| Q |
327 |
tactataa |
334 |
Q |
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|||||||| |
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| T |
40919273 |
tactataa |
40919266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 297
Target Start/End: Original strand, 30429117 - 30429207
Alignment:
| Q |
207 |
taattaatgtatctgacctttttataaaccaattactttagttattcaacgaacctcaaaaattgtctttggttataaatgtaaccagaaa |
297 |
Q |
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||||||||||||||||||||| |||| || | ||| |||||||||||| ||||| || |||| | |||| |||||||||| |||||||| |
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| T |
30429117 |
taattaatgtatctgacctttatatagactagatacattagttattcaataaacctaaacaattttttttgcttataaatgtgaccagaaa |
30429207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 211 - 295
Target Start/End: Complemental strand, 16829289 - 16829205
Alignment:
| Q |
211 |
taatgtatctgacctttttataaaccaattactttagttattcaacgaacctcaaaaattgtctttggttataaatgtaaccaga |
295 |
Q |
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||||||||||||||||| ||||||| | ||| |||| ||||||| |||| | |||| || | |||| |||||||||| |||||| |
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| T |
16829289 |
taatgtatctgacctttatataaactagatacattagatattcaatgaacttaaaaagttatttttgcttataaatgtgaccaga |
16829205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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