View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_71 (Length: 359)
Name: NF3772_low_71
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_71 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 55220990 - 55220647
Alignment:
| Q |
1 |
gtaaaccaacacaaaagttccgatcatttcagcacctagggcagagcctttgctgtaaccggaagctacagagttagcaccgccgcctaggtggttgtaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
55220990 |
gtaaaccaacacaaaagttccgatcatttcagcacctagggcagagcctttgctgtaaccggaagctacaaagttagcaccgccgcctaggtggttgtaa |
55220891 |
T |
|
| Q |
101 |
gggtgtttcatgaaagccttcaccaacccaacgccacagatagcacctaaacactgtgctaccatgtataacaccgctcttatgagagacactttacgag |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55220890 |
gggtgtttcatgaatgccttcaccaacccaacgccacagatagcacctaaacactgtgctaccatgtataacaccgctcttatgagagacactttacgag |
55220791 |
T |
|
| Q |
201 |
ccaagaaaaggccgaatgtgaccgcagggttaatgtggccaccggagataccggcagtgcagtagacaaggacaaaaatcatgccaccaaaggaccatgc |
300 |
Q |
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| T |
55220790 |
ccaagaaaaggccgaatgtgaccgcagggttaatgtggccaccggagataccggcagtgcagtagacaaggacaaagatcatgccaccaaaggaccatgc |
55220691 |
T |
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| Q |
301 |
tacgcctaaaaggccaacaccgtcacatggagcagtttgttttt |
344 |
Q |
| |
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| T |
55220690 |
tatgcctaaaaggccaacaccgtcacatggagcagtttgttttt |
55220647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 293
Target Start/End: Original strand, 40835616 - 40835658
Alignment:
| Q |
251 |
ccggcagtgcagtagacaaggacaaaaatcatgccaccaaagg |
293 |
Q |
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| T |
40835616 |
ccggcagtgcagtagacaagaacaaagatcatgccaccaaagg |
40835658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 243
Target Start/End: Complemental strand, 42796442 - 42796312
Alignment:
| Q |
113 |
aaagccttcaccaacccaacgccacagatagcacctaaacactgtgctaccatgtataacaccgctcttatgagagacactttacgagccaagaaaaggc |
212 |
Q |
| |
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|||||||| ||||||||||| ||| ||||| ||||||||||| || |||||||| | | ||||| || | |||||| ||||||||||| || || | |
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| T |
42796442 |
aaagccttaaccaacccaactccagcaatagctcctaaacactgagccaccatgtacataattgctctgatcaaagacaccttacgagccaaaaatagcc |
42796343 |
T |
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| Q |
213 |
cgaatgtgaccgcagggttaatgtggccacc |
243 |
Q |
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| T |
42796342 |
caaatgtcactgctgggttaatgtgaccacc |
42796312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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