View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3772_low_76 (Length: 339)
Name: NF3772_low_76
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_76 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 32 - 326
Target Start/End: Original strand, 12162451 - 12162745
Alignment:
| Q |
32 |
atgaagattcagattcttaaagtatcgaagggttaagacaacaataactaaaaatatatatcaaaaagatgggtacatagaatccatcttaacactaata |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
12162451 |
atgaagattcagattcttaaagtatcgaagggttaacacaataataactaaaaatatatataaaaaagatgggtacatagaatccattttaacactaata |
12162550 |
T |
|
| Q |
132 |
ctactaaaatnnnnnnnncaaaggtagtgtcaacattttccagctaataagctcacttactttaaataatttcattcatgaatagtttgctgtctttatc |
231 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12162551 |
ctactaaaataaaaaaaacaaaggtagtgtcaacattttccagctaataagctcacttactttaaataatttcattcatgaatagtttgctgtctttatc |
12162650 |
T |
|
| Q |
232 |
aaatacatatccacgttccttgaataaacaacttgtgtcacattggtccaaaaagcatactgaattattcaaaggcaggccattatttgtatcct |
326 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12162651 |
aaatacatatccacgttccatgaataaacaacttgtgtcacattggtccaaaaagcatactgaattattcaaaggcaggccattatttgtatcct |
12162745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 195
Target Start/End: Original strand, 12210153 - 12210191
Alignment:
| Q |
157 |
agtgtcaacattttccagctaataagctcacttacttta |
195 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
12210153 |
agtgtcaacattttccagctaatatgctcacttacttta |
12210191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 319
Target Start/End: Original strand, 12210236 - 12210282
Alignment:
| Q |
273 |
attggtccaaaaagcatactgaattattcaaaggcaggccattattt |
319 |
Q |
| |
|
||||||||||||| ||| || | |||||||||||||||||||||||| |
|
|
| T |
12210236 |
attggtccaaaaaacatgctcacttattcaaaggcaggccattattt |
12210282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University