View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_78 (Length: 336)
Name: NF3772_low_78
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_78 |
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| [»] scaffold0060 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 21280814 - 21281001
Alignment:
| Q |
18 |
taatgtagttccaaatcaatgtttcttgaattacttattcaagtgtgaaccactaaactagaaaattgatatgacagnnnnnnnnnnnnnnnnnnnnnnn |
117 |
Q |
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| T |
21280814 |
taatgtagttccaaatcaatgtttcttgaattacttattcaagtgtgaaccactaaactagaaaattgatatgacagaagagaaaaagaaaaataataaa |
21280913 |
T |
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| Q |
118 |
caagaacgaggtgaaggtaaagattacacacctgatcagtggtgcaacagtagtgaaatgtggattaaaggtttccgtgagtttgaaa |
205 |
Q |
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| T |
21280914 |
caaggacgaggtgaaggtaaagattacacacctgatcagtggtgcaacagtagtaaaatgtggattaaaggtttccgtgagtttgaaa |
21281001 |
T |
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Target: scaffold0060 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 151 - 260
Target Start/End: Complemental strand, 16717 - 16608
Alignment:
| Q |
151 |
gatcagtggtgcaacagtagtgaaatgtggattaaaggtttccgtgagtttgaaagagaagaagtgcatttgatgtaattattatggaaaatggtaaata |
250 |
Q |
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| T |
16717 |
gatcaatggtacaacaatagtacaatatggattaaaggtttctgtgagttccaaggagaagaagtacatttcgtgtaattattaagttaaatgctaaata |
16618 |
T |
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| Q |
251 |
ttgtgaatat |
260 |
Q |
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| T |
16617 |
ttgtgaatat |
16608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 125 - 183
Target Start/End: Complemental strand, 22585 - 22527
Alignment:
| Q |
125 |
gaggtgaaggtaaagattacacacctgatcagtggtgcaacagtagtgaaatgtggatt |
183 |
Q |
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| T |
22585 |
gaggtgaaggtcaagatgacatacctgatcagtggtgcagcagtagtaaaatgtggatt |
22527 |
T |
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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 260
Target Start/End: Complemental strand, 21638198 - 21638103
Alignment:
| Q |
165 |
cagtagtgaaatgtggattaaaggtttccgtgagtttgaaagagaagaagtgcatttgatgtaattattatggaaaatggtaaatattgtgaatat |
260 |
Q |
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| T |
21638198 |
cagtagtacaatgtggatgaaaggtttttgtatgttcgaaggagaagaagtgcatttcgtgtaattattgacgaaaatgctaaatattgtgaatat |
21638103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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