View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_89 (Length: 313)
Name: NF3772_low_89
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_89 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 11 - 295
Target Start/End: Original strand, 43172315 - 43172600
Alignment:
| Q |
11 |
cagagagggaacatgtaactcttgtcaatgatgtagcttaaaaattgcataaggattgagagagtaagggaaattaacaaaacataacatatatagaaaa |
110 |
Q |
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| T |
43172315 |
cagagagggaacatgtaactcttgtcaatgatgtagcttaagaattgcataaggattgagagagtaagggaaattaacaaaacataacatatatagaaaa |
43172414 |
T |
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| Q |
111 |
gaatcttttttcttgccactatatggtaaattgtgaagggggataatgaaaaggaacgtgtgggtaatgccagagggatcgagtataatttgattaaaaa |
210 |
Q |
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| T |
43172415 |
taatcttttttcttgccactatatggtaaattgtgaagggggataatgaaaaggaacgtgtgggtaatgccagagggatcgagtatagtttgattaaaaa |
43172514 |
T |
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| Q |
211 |
atatttgttgtgacaacatgactccaacaacgtagttatttgtgattgatatcatggtagcttattgtgatttca-taaacctact |
295 |
Q |
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| T |
43172515 |
atatttgttgtgacaacatgcctccaacaacgtagttacttgtgattgatatcatggtagcttattgtgatttcagtaaacctact |
43172600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 43155244 - 43155299
Alignment:
| Q |
10 |
gcagagagggaacatgtaactcttgtcaatgatgtagcttaaaaattgcataagga |
65 |
Q |
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| T |
43155244 |
gcagagaaggaacatgtaagtcttttcaatgatgtagctaaagaattgcataagga |
43155299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 45228214 - 45228328
Alignment:
| Q |
11 |
cagagagggaacatgtaactcttgtcaatgatgtagcttaaaaattgcataaggattgagagagtaagggaaattaacaaaacataacatatatagaaaa |
110 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45228214 |
cagagagggaacatgtaactcttgtcgatgatgtagcttaagaattgcataaggattgagagagtaagggaaattaacaaaacataacatatatagaaaa |
45228313 |
T |
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| Q |
111 |
gaatcttttttcttg |
125 |
Q |
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| T |
45228314 |
gaatcttttttcttg |
45228328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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