View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3772_low_9 (Length: 629)

Name: NF3772_low_9
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3772_low_9
NF3772_low_9
[»] chr7 (21 HSPs)
chr7 (95-175)||(43002542-43002622)
chr7 (94-172)||(982217-982295)
chr7 (14-63)||(43002458-43002506)
chr7 (94-156)||(44105335-44105397)
chr7 (134-175)||(35648130-35648171)
chr7 (135-175)||(4061352-4061392)
chr7 (135-175)||(6244591-6244631)
chr7 (135-175)||(28493573-28493613)
chr7 (135-175)||(42327455-42327495)
chr7 (135-175)||(46536840-46536880)
chr7 (135-175)||(46614973-46615013)
chr7 (135-175)||(48312862-48312902)
chr7 (135-174)||(27827474-27827513)
chr7 (138-175)||(42264601-42264638)
chr7 (244-272)||(982346-982374)
chr7 (135-175)||(28957459-28957499)
chr7 (135-175)||(29993398-29993438)
chr7 (135-175)||(31031300-31031340)
chr7 (135-175)||(42328364-42328404)
chr7 (135-175)||(43158001-43158041)
chr7 (135-175)||(43338378-43338418)
[»] chr4 (22 HSPs)
chr4 (94-175)||(53443691-53443772)
chr4 (337-444)||(25506211-25506318)
chr4 (94-170)||(55494377-55494453)
chr4 (372-444)||(25871125-25871197)
chr4 (94-156)||(7140294-7140356)
chr4 (372-444)||(16748840-16748912)
chr4 (135-175)||(2942982-2943022)
chr4 (135-175)||(6245012-6245052)
chr4 (135-175)||(19801164-19801204)
chr4 (135-175)||(33984813-33984853)
chr4 (135-175)||(39839463-39839503)
chr4 (135-175)||(44449181-44449221)
chr4 (135-175)||(47633190-47633230)
chr4 (31-63)||(53443618-53443650)
chr4 (135-175)||(55345402-55345442)
chr4 (135-174)||(49334523-49334562)
chr4 (94-153)||(52909729-52909788)
chr4 (134-175)||(32013107-32013148)
chr4 (135-175)||(37113693-37113733)
chr4 (135-175)||(43375356-43375396)
chr4 (135-175)||(53284722-53284762)
chr4 (135-175)||(54999439-54999479)
[»] chr5 (24 HSPs)
chr5 (94-170)||(36960205-36960281)
chr5 (94-171)||(36944180-36944257)
chr5 (337-444)||(14591817-14591924)
chr5 (336-444)||(30917470-30917578)
chr5 (353-540)||(19828622-19828802)
chr5 (299-337)||(29155392-29155430)
chr5 (134-175)||(27812355-27812396)
chr5 (134-175)||(42423380-42423421)
chr5 (135-175)||(6788915-6788955)
chr5 (135-175)||(12282376-12282416)
chr5 (135-175)||(15499393-15499433)
chr5 (135-175)||(23591385-23591425)
chr5 (135-175)||(24172089-24172129)
chr5 (135-175)||(29524666-29524706)
chr5 (372-444)||(30916399-30916471)
chr5 (135-175)||(34589225-34589265)
chr5 (135-175)||(36761867-36761907)
chr5 (135-175)||(42710037-42710077)
chr5 (136-175)||(11783529-11783568)
chr5 (135-175)||(7614351-7614391)
chr5 (135-175)||(12939071-12939111)
chr5 (135-175)||(12953156-12953196)
chr5 (135-175)||(37530047-37530087)
chr5 (135-175)||(41733615-41733655)
[»] chr3 (15 HSPs)
chr3 (336-444)||(40396833-40396941)
chr3 (94-171)||(51981543-51981620)
chr3 (134-175)||(41990981-41991022)
chr3 (135-175)||(1362436-1362476)
chr3 (135-175)||(8320769-8320809)
chr3 (135-175)||(8880120-8880160)
chr3 (135-175)||(30317288-30317328)
chr3 (135-175)||(30741177-30741217)
chr3 (135-175)||(34435318-34435358)
chr3 (135-175)||(35406311-35406351)
chr3 (135-175)||(36238602-36238642)
chr3 (337-372)||(50232741-50232776)
chr3 (134-175)||(2557201-2557242)
chr3 (139-175)||(19275807-19275843)
chr3 (135-175)||(51063600-51063640)
[»] chr8 (13 HSPs)
chr8 (94-172)||(2772273-2772351)
chr8 (135-175)||(5838979-5839019)
chr8 (135-175)||(14912480-14912520)
chr8 (135-175)||(22215833-22215873)
chr8 (135-175)||(35397356-35397396)
chr8 (135-175)||(38745425-38745465)
chr8 (135-175)||(39734744-39734784)
chr8 (135-175)||(40530214-40530254)
chr8 (135-175)||(43800123-43800163)
chr8 (334-382)||(5957301-5957348)
chr8 (135-175)||(20696683-20696723)
chr8 (135-175)||(25099557-25099597)
chr8 (135-175)||(35159590-35159630)
[»] chr1 (18 HSPs)
chr1 (94-170)||(28344613-28344689)
chr1 (106-155)||(11333807-11333856)
chr1 (106-155)||(11491827-11491876)
chr1 (372-444)||(50052794-50052866)
chr1 (94-156)||(31655527-31655589)
chr1 (14-63)||(31655624-31655672)
chr1 (135-175)||(12015411-12015451)
chr1 (135-175)||(30358795-30358835)
chr1 (135-175)||(45900850-45900890)
chr1 (135-175)||(50585545-50585585)
chr1 (136-174)||(12769919-12769957)
chr1 (138-175)||(47325905-47325942)
chr1 (135-175)||(3569706-3569746)
chr1 (135-175)||(11824303-11824343)
chr1 (135-175)||(27748318-27748358)
chr1 (135-175)||(36740238-36740278)
chr1 (135-175)||(39326327-39326367)
chr1 (135-175)||(46312000-46312040)
[»] chr6 (5 HSPs)
chr6 (338-444)||(31121181-31121287)
chr6 (135-175)||(18368927-18368967)
chr6 (135-175)||(22708035-22708075)
chr6 (135-175)||(24118526-24118566)
chr6 (104-174)||(32441627-32441697)
[»] chr2 (12 HSPs)
chr2 (135-175)||(1875316-1875356)
chr2 (135-175)||(7455249-7455289)
chr2 (135-175)||(16495918-16495958)
chr2 (135-175)||(36935393-36935433)
chr2 (135-175)||(36985969-36986009)
chr2 (135-175)||(42520519-42520559)
chr2 (398-444)||(13007976-13008022)
chr2 (135-175)||(5774811-5774851)
chr2 (135-175)||(8876394-8876434)
chr2 (135-175)||(10034358-10034398)
chr2 (135-171)||(18240073-18240109)
chr2 (135-171)||(38325047-38325083)
[»] scaffold0464 (1 HSPs)
scaffold0464 (138-175)||(5386-5423)
[»] scaffold0330 (1 HSPs)
scaffold0330 (135-175)||(7736-7776)
[»] scaffold0325 (1 HSPs)
scaffold0325 (135-175)||(19090-19130)


Alignment Details
Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 95 - 175
Target Start/End: Original strand, 43002542 - 43002622
Alignment:
Q  95 aattaaatagtcatgtacttttaggtcattttatatttataacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  43002542 aattaaatagtcatgtacttttaggtcattttatatttataacagctaattttaccaaacacactatttttaataagcaag 43002622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 94 - 172
Target Start/End: Original strand, 982217 - 982295
Alignment:
Q  94 aaattaaatagtcatgtacttttaggtcattttatatttataacagctaattttaccaaacacactgtttttaataagc 172  Q
    ||||||||| |||||||||||| | |||||||||||||||||||| |||||||||||||||||| | |||||| |||||    
T  982217 aaattaaattgtcatgtactttcaagtcattttatatttataacatctaattttaccaaacacattatttttattaagc 982295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 43002458 - 43002506
Alignment:
Q  14 agacaatacttgatttatcataggttttgatgaatattcattttcaaagg 63  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  43002458 agacaatacttgattt-tcataggttttgatgaatattcattttcaaagg 43002506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 44105335 - 44105397
Alignment:
Q  94 aaattaaatagtcatgtacttttaggtcattttatatttataacagctaattttaccaaacac 156  Q
    |||||||||  |||||||||||||  | ||| |||||||||||||||||| ||||||||||||    
T  44105335 aaattaaattatcatgtacttttatattattctatatttataacagctaaatttaccaaacac 44105397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 35648130 - 35648171
Alignment:
Q  134 taacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    |||||||||||||||||||||||| | |||||||||||||||    
T  35648130 taacagctaattttaccaaacacattatttttaataagcaag 35648171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 4061352 - 4061392
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  4061352 aacagctaattttaccaaacacattatttttaataagcaag 4061392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 6244591 - 6244631
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  6244591 aacagctaattttaccaaacacattatttttaataagcaag 6244631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 28493613 - 28493573
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  28493613 aacagctaattttaccaaacacattatttttaataagcaag 28493573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 42327495 - 42327455
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  42327495 aacagctaattttaccaaacacattatttttaataagcaag 42327455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 46536840 - 46536880
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  46536840 aacagctaattttaccaaacacattatttttaataagcaag 46536880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 46615013 - 46614973
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  46615013 aacagctaattttaccaaacacattatttttaataagcaag 46614973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 48312902 - 48312862
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  48312902 aacagctaattttaccaaacacattatttttaataagcaag 48312862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 174
Target Start/End: Original strand, 27827474 - 27827513
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaa 174  Q
    ||||||||||||||||||||||| | ||||||||||||||    
T  27827474 aacagctaattttaccaaacacattatttttaataagcaa 27827513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 175
Target Start/End: Complemental strand, 42264638 - 42264601
Alignment:
Q  138 agctaattttaccaaacacactgtttttaataagcaag 175  Q
    |||||||||||||||||||| | |||||||||||||||    
T  42264638 agctaattttaccaaacacattatttttaataagcaag 42264601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 244 - 272
Target Start/End: Original strand, 982346 - 982374
Alignment:
Q  244 tatggcttctttttaccaaacagagcctt 272  Q
    |||||||||||||||||||||||||||||    
T  982346 tatggcttctttttaccaaacagagcctt 982374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 28957499 - 28957459
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  28957499 aacaactaattttaccaaacacattatttttaataagcaag 28957459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 29993438 - 29993398
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||| ||| | |||||||||||||||    
T  29993438 aacagctaattttaccaaagacattatttttaataagcaag 29993398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 31031340 - 31031300
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  31031340 aacaactaattttaccaaacacattatttttaataagcaag 31031300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 42328404 - 42328364
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  42328404 aacaactaattttaccaaacacattatttttaataagcaag 42328364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 43158001 - 43158041
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  43158001 aacaactaattttaccaaacacattatttttaataagcaag 43158041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 43338378 - 43338418
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  43338378 aacaactaattttaccaaacacattatttttaataagcaag 43338418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 7e-29; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 94 - 175
Target Start/End: Original strand, 53443691 - 53443772
Alignment:
Q  94 aaattaaatagtcatgtacttttaggtcattttatatttataacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||| |||||||||||||||    
T  53443691 aaattaaatagtcatgtacttttaggtcattttatatatataacaactaattttatcaaacacactatttttaataagcaag 53443772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 337 - 444
Target Start/End: Original strand, 25506211 - 25506318
Alignment:
Q  337 gggagaggatccactccggtggaaatctcctcctgttttctcctgtgatataatctcaaccgtccatttcttttaaggacaccttaactaatcttagtcc 436  Q
    ||||||||||||||||| ||| |||| |||||| ||||||||||||||   ||||| | ||||||||||||||||| || ||||||| |||||| || ||    
T  25506211 gggagaggatccactccagtgaaaatttcctccagttttctcctgtgaatcaatcttagccgtccatttcttttaatgaaaccttaattaatctcagccc 25506310  T
Q  437 ttcattca 444  Q
    ||||||||    
T  25506311 ttcattca 25506318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 94 - 170
Target Start/End: Complemental strand, 55494453 - 55494377
Alignment:
Q  94 aaattaaatagtcatgtacttttaggtcattttatatttataacagctaattttaccaaacacactgtttttaataa 170  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||| |||| ||| | ||||||||||    
T  55494453 aaattaaattgtcatgtacttttaggtcattttatatttataacaactaatcttatcaaatacattatttttaataa 55494377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 372 - 444
Target Start/End: Original strand, 25871125 - 25871197
Alignment:
Q  372 ttttctcctgtgatataatctcaaccgtccatttcttttaaggacaccttaactaatcttagtccttcattca 444  Q
    ||||||||||||| ||||||| ||||||||||| ||||||| ||||||||||||||||| || | ||||||||    
T  25871125 ttttctcctgtgaaataatcttaaccgtccattccttttaatgacaccttaactaatctcagcctttcattca 25871197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 94 - 156
Target Start/End: Complemental strand, 7140356 - 7140294
Alignment:
Q  94 aaattaaatagtcatgtacttttaggtcattttatatttataacagctaattttaccaaacac 156  Q
    |||| |||| |||||||||||||| |||||||||||||||||| |||||| ||||||||||||    
T  7140356 aaataaaattgtcatgtacttttaagtcattttatatttataagagctaaatttaccaaacac 7140294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 444
Target Start/End: Original strand, 16748840 - 16748912
Alignment:
Q  372 ttttctcctgtgatataatctcaaccgtccatttcttttaaggacaccttaactaatcttagtccttcattca 444  Q
    ||||||||||||| ||||||| |  ||||||||  |||||| ||||||||||||||||| |||| ||||||||    
T  16748840 ttttctcctgtgaaataatcttagtcgtccattctttttaatgacaccttaactaatctcagtctttcattca 16748912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 2943022 - 2942982
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  2943022 aacagctaattttaccaaacacattatttttaataagcaag 2942982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 6245012 - 6245052
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  6245012 aacagctaattttaccaaacacattatttttaataagcaag 6245052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 19801204 - 19801164
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  19801204 aacagctaattttaccaaacacattatttttaataagcaag 19801164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 33984813 - 33984853
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  33984813 aacagctaattttaccaaacacattatttttaataagcaag 33984853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 39839503 - 39839463
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  39839503 aacagctaattttaccaaacacattatttttaataagcaag 39839463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 44449181 - 44449221
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  44449181 aacagctaattttaccaaacacattatttttaataagcaag 44449221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 47633230 - 47633190
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  47633230 aacagctaattttaccaaacacattatttttaataagcaag 47633190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 53443618 - 53443650
Alignment:
Q  31 tcataggttttgatgaatattcattttcaaagg 63  Q
    |||||||||||||||||||||||||||||||||    
T  53443618 tcataggttttgatgaatattcattttcaaagg 53443650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 55345402 - 55345442
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  55345402 aacagctaattttaccaaacacattatttttaataagcaag 55345442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 174
Target Start/End: Complemental strand, 49334562 - 49334523
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaa 174  Q
    ||||||||||||||||||||||| | ||||||||||||||    
T  49334562 aacagctaattttaccaaacacattatttttaataagcaa 49334523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 153
Target Start/End: Original strand, 52909729 - 52909788
Alignment:
Q  94 aaattaaatagtcatgtacttttaggtcattttatatttataacagctaattttaccaaa 153  Q
    |||||||||  ||||||| |||||| ||||||||||||||||| |||||| |||| ||||    
T  52909729 aaattaaattatcatgtaattttagatcattttatatttataaaagctaaatttatcaaa 52909788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 32013107 - 32013148
Alignment:
Q  134 taacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||| |||||||||||||||||| | |||||||||||||||    
T  32013107 taacaactaattttaccaaacacattatttttaataagcaag 32013148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 37113733 - 37113693
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  37113733 aacatctaattttaccaaacacattatttttaataagcaag 37113693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 43375356 - 43375396
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  43375356 aacaactaattttaccaaacacattatttttaataagcaag 43375396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 53284722 - 53284762
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  53284722 aacaactaattttaccaaacacattatttttaataagcaag 53284762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 54999479 - 54999439
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  54999479 aacaactaattttaccaaacacattatttttaataagcaag 54999439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 3e-28; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 94 - 170
Target Start/End: Original strand, 36960205 - 36960281
Alignment:
Q  94 aaattaaatagtcatgtacttttaggtcattttatatttataacagctaattttaccaaacacactgtttttaataa 170  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  36960205 aaattaaattgtcatgtacttttaggtcattttatatttataacagctaattttaccaaacacattatttttaataa 36960281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 94 - 171
Target Start/End: Complemental strand, 36944257 - 36944180
Alignment:
Q  94 aaattaaatagtcatgtacttttaggtcattttatatttataacagctaattttaccaaacacactgtttttaataag 171  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||| | |||||||||||    
T  36944257 aaattaaattgtcatgtactttgaggtcattttatatttataacagctaattttatcaaacacattatttttaataag 36944180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 337 - 444
Target Start/End: Original strand, 14591817 - 14591924
Alignment:
Q  337 gggagaggatccactccggtggaaatctcctcctgttttctcctgtgatataatctcaaccgtccatttcttttaaggacaccttaactaatcttagtcc 436  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||| | || |||||| ||||||| |||| || ||  |||||||| ||    
T  14591817 gggagaggatccactccagtggaaatttcctcctgttttctcctgtgaaataatcttagccatccattccttttaatgacatctgaataaatcttagccc 14591916  T
Q  437 ttcattca 444  Q
    ||||||||    
T  14591917 ttcattca 14591924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 336 - 444
Target Start/End: Complemental strand, 30917578 - 30917470
Alignment:
Q  336 ggggagaggatccactccggtggaaatctcctcctgttttctcctgtgatataatctcaaccgtccatttcttttaaggacaccttaactaatcttagtc 435  Q
    |||||||||||||||||  |||||||| | ||||| |||||||  |||| ||||||| | ||||||||||||||||| |||| ||||| ||||||||  |    
T  30917578 ggggagaggatccactctagtggaaattttctcctattttctcgagtgaaataatcttagccgtccatttcttttaatgacatcttaattaatcttaacc 30917479  T
Q  436 cttcattca 444  Q
    |||||||||    
T  30917478 cttcattca 30917470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 353 - 540
Target Start/End: Original strand, 19828622 - 19828802
Alignment:
Q  353 cggtggaaatctcctcctgttttctcctgtgatataatctcaaccgtccatttcttttaaggacaccttaactaatcttagtccttcattcannnnnnnn 452  Q
    |||||||||| ||||| ||||||||||||||| ||||||| | ||||||||   ||||||  ||| |||||||||| |||| ||||||||||            
T  19828622 cggtggaaatttcctcatgttttctcctgtgaaataatcttagccgtccatccattttaataacatcttaactaattttagcccttcattcattttttt- 19828720  T
Q  453 nnnngtactaagttcattcatttgtttccttcccttcctcaggctgtttcatttccttcctttcctcaccccattcattccctcacaa 540  Q
         ||| |||||||||||||| |||||||| |||||||| | |||||| ||||||||  |||||||| |||||||| | |||||||    
T  19828721 -----tac-aagttcattcatttctttccttctcttcctcacgttgtttcgtttccttctcttcctcacaccattcatccactcacaa 19828802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 337
Target Start/End: Original strand, 29155392 - 29155430
Alignment:
Q  299 caagggagagattttgatttactaacattgagaataggg 337  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  29155392 caagggagagattttgatttactaacaatgagaataggg 29155430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 27812396 - 27812355
Alignment:
Q  134 taacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    |||||||||||||||||||||||| | |||||||||||||||    
T  27812396 taacagctaattttaccaaacacattatttttaataagcaag 27812355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 42423380 - 42423421
Alignment:
Q  134 taacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    |||||||||||||||||||||||| | |||||||||||||||    
T  42423380 taacagctaattttaccaaacacattatttttaataagcaag 42423421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 6788955 - 6788915
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  6788955 aacagctaattttaccaaacacattatttttaataagcaag 6788915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 12282376 - 12282416
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  12282376 aacagctaattttaccaaacacattatttttaataagcaag 12282416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 15499393 - 15499433
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  15499393 aacagctaattttaccaaacacattatttttaataagcaag 15499433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 23591385 - 23591425
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  23591385 aacagctaattttaccaaacacattatttttaataagcaag 23591425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 24172089 - 24172129
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  24172089 aacagctaattttaccaaacacattatttttaataagcaag 24172129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 29524706 - 29524666
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  29524706 aacagctaattttaccaaacacattatttttaataagcaag 29524666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 372 - 444
Target Start/End: Original strand, 30916399 - 30916471
Alignment:
Q  372 ttttctcctgtgatataatctcaaccgtccatttcttttaaggacaccttaactaatcttagtccttcattca 444  Q
    |||||||||||||  ||||||||||| | |||||||||||| |||| ||||||| |||| |  ||||||||||    
T  30916399 ttttctcctgtgagctaatctcaaccattcatttcttttaatgacagcttaactcatctcaacccttcattca 30916471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 34589265 - 34589225
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  34589265 aacagctaattttaccaaacacattatttttaataagcaag 34589225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 36761867 - 36761907
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  36761867 aacagctaattttaccaaacacattatttttaataagcaag 36761907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 42710037 - 42710077
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  42710037 aacagctaattttaccaaacacattatttttaataagcaag 42710077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 175
Target Start/End: Complemental strand, 11783568 - 11783529
Alignment:
Q  136 acagctaattttaccaaacacactgtttttaataagcaag 175  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  11783568 acagctaattttaccaaacacattatttttaataagcaag 11783529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 7614391 - 7614351
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    |||||||||||||| |||||||| | |||||||||||||||    
T  7614391 aacagctaattttatcaaacacattatttttaataagcaag 7614351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 12939111 - 12939071
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  12939111 aacaactaattttaccaaacacattatttttaataagcaag 12939071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 12953196 - 12953156
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  12953196 aacaactaattttaccaaacacattatttttaataagcaag 12953156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 37530087 - 37530047
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | ||||||| |||||||    
T  37530087 aacagctaattttaccaaacacattatttttaacaagcaag 37530047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 41733655 - 41733615
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||| ||||||||||||||||| | |||||||||||||||    
T  41733655 aacagttaattttaccaaacacattatttttaataagcaag 41733615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 3e-28; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 336 - 444
Target Start/End: Complemental strand, 40396941 - 40396833
Alignment:
Q  336 ggggagaggatccactccggtggaaatctcctcctgttttctcctgtgatataatctcaaccgtccatttcttttaaggacaccttaactaatcttagtc 435  Q
    |||||||||||||||||| |||||||| | ||||||||||||||||||| ||||||| | || |||||| ||||||| |||| ||||| |||||||||||    
T  40396941 ggggagaggatccactccagtggaaattttctcctgttttctcctgtgaaataatcttagccatccattccttttaatgacatcttaattaatcttagtc 40396842  T
Q  436 cttcattca 444  Q
    |||||||||    
T  40396841 cttcattca 40396833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 94 - 171
Target Start/End: Original strand, 51981543 - 51981620
Alignment:
Q  94 aaattaaatagtcatgtacttttaggtcattttatatttataacagctaattttaccaaacacactgtttttaataag 171  Q
    |||||||||  |||||||||||||||||||||||||||||||||  | ||||||| |||||||| | |||||||||||    
T  51981543 aaattaaattatcatgtacttttaggtcattttatatttataactaccaattttatcaaacacattatttttaataag 51981620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 41991022 - 41990981
Alignment:
Q  134 taacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    |||||||||||||||||||||||| | |||||||||||||||    
T  41991022 taacagctaattttaccaaacacattatttttaataagcaag 41990981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 1362436 - 1362476
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  1362436 aacagctaattttaccaaacacattatttttaataagcaag 1362476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 8320809 - 8320769
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  8320809 aacagctaattttaccaaacacattatttttaataagcaag 8320769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 8880120 - 8880160
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  8880120 aacagctaattttaccaaacacattatttttaataagcaag 8880160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 30317328 - 30317288
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  30317328 aacagctaattttaccaaacacattatttttaataagcaag 30317288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 30741217 - 30741177
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  30741217 aacagctaattttaccaaacacattatttttaataagcaag 30741177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 34435358 - 34435318
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  34435358 aacagctaattttaccaaacacattatttttaataagcaag 34435318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 35406311 - 35406351
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  35406311 aacagctaattttaccaaacacattatttttaataagcaag 35406351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 36238602 - 36238642
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  36238602 aacagctaattttaccaaacacattatttttaataagcaag 36238642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 372
Target Start/End: Complemental strand, 50232776 - 50232741
Alignment:
Q  337 gggagaggatccactccggtggaaatctcctcctgt 372  Q
    |||||||||||||||||||||||||| |||||||||    
T  50232776 gggagaggatccactccggtggaaatttcctcctgt 50232741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 2557242 - 2557201
Alignment:
Q  134 taacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||| |||||||| | |||||||||||||||    
T  2557242 taacagctaattttatcaaacacattatttttaataagcaag 2557201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 19275807 - 19275843
Alignment:
Q  139 gctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||| | |||||||||||||||    
T  19275807 gctaattttaccaaacacattatttttaataagcaag 19275843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 51063600 - 51063640
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  51063600 aacaactaattttaccaaacacattatttttaataagcaag 51063640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 5e-27; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 94 - 172
Target Start/End: Complemental strand, 2772351 - 2772273
Alignment:
Q  94 aaattaaatagtcatgtacttttaggtcattttatatttataacagctaattttaccaaacacactgtttttaataagc 172  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||    
T  2772351 aaattaaattgtcatgtacttttaggtcattttatatttataacagctagttttaccaaacacattatttttaataagc 2772273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 5838979 - 5839019
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  5838979 aacagctaattttaccaaacacattatttttaataagcaag 5839019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 14912480 - 14912520
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  14912480 aacagctaattttaccaaacacattatttttaataagcaag 14912520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 22215833 - 22215873
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  22215833 aacagctaattttaccaaacacattatttttaataagcaag 22215873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 35397396 - 35397356
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  35397396 aacagctaattttaccaaacacattatttttaataagcaag 35397356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 38745465 - 38745425
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  38745465 aacagctaattttaccaaacacattatttttaataagcaag 38745425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 39734744 - 39734784
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  39734744 aacagctaattttaccaaacacattatttttaataagcaag 39734784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 40530214 - 40530254
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  40530214 aacagctaattttaccaaacacattatttttaataagcaag 40530254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 43800163 - 43800123
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  43800163 aacagctaattttaccaaacacattatttttaataagcaag 43800123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 334 - 382
Target Start/End: Complemental strand, 5957348 - 5957301
Alignment:
Q  334 agggggagaggatccactccggtggaaatctcctcctgttttctcctgt 382  Q
    |||||||| |||||| |||||||||| ||||| ||||||||||||||||    
T  5957348 agggggagtggatcctctccggtggagatctc-tcctgttttctcctgt 5957301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 20696723 - 20696683
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||| ||||    
T  20696723 aacagctaattttaccaaacacattatttttaataaccaag 20696683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 25099597 - 25099557
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||| ||||    
T  25099597 aacagctaattttaccaaacacattatttttaataaacaag 25099557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 35159630 - 35159590
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  35159630 aacaactaattttaccaaacacattatttttaataagcaag 35159590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 94 - 170
Target Start/End: Original strand, 28344613 - 28344689
Alignment:
Q  94 aaattaaatagtcatgtacttttaggtcattttatatttataacagctaattttaccaaacacactgtttttaataa 170  Q
    ||||||||| ||||| |||||||| ||||||||||||||||||||| ||||||||||||||||| | ||||||||||    
T  28344613 aaattaaattgtcatatacttttaagtcattttatatttataacagttaattttaccaaacacattatttttaataa 28344689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 106 - 155
Target Start/End: Original strand, 11333807 - 11333856
Alignment:
Q  106 catgtacttttaggtcattttatatttataacagctaattttaccaaaca 155  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11333807 catgtacttttaggtcattttatatttataacagctaaatttaccaaaca 11333856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 106 - 155
Target Start/End: Original strand, 11491827 - 11491876
Alignment:
Q  106 catgtacttttaggtcattttatatttataacagctaattttaccaaaca 155  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11491827 catgtacttttaggtcattttatatttataacagctaaatttaccaaaca 11491876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 372 - 444
Target Start/End: Original strand, 50052794 - 50052866
Alignment:
Q  372 ttttctcctgtgatataatctcaaccgtccatttcttttaaggacaccttaactaatcttagtccttcattca 444  Q
    ||||||||||||| ||||||||| || |||||| ||||||| |||| ||||| ||||||||||||||||||||    
T  50052794 ttttctcctgtgaaataatctcagccatccattccttttaatgacatcttaattaatcttagtccttcattca 50052866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 94 - 156
Target Start/End: Complemental strand, 31655589 - 31655527
Alignment:
Q  94 aaattaaatagtcatgtacttttaggtcattttatatttataacagctaattttaccaaacac 156  Q
    |||| |||| |||||||| ||||||||||||||||||||||||||| ||| ||||||||||||    
T  31655589 aaataaaattgtcatgtaattttaggtcattttatatttataacagttaaatttaccaaacac 31655527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 31655672 - 31655624
Alignment:
Q  14 agacaatacttgatttatcataggttttgatgaatattcattttcaaagg 63  Q
    ||||||||| |||||| ||||||||||||||||||||| |||||||||||    
T  31655672 agacaatacgtgattt-tcataggttttgatgaatatttattttcaaagg 31655624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 12015411 - 12015451
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  12015411 aacagctaattttaccaaacacattatttttaataagcaag 12015451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 30358795 - 30358835
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  30358795 aacagctaattttaccaaacacattatttttaataagcaag 30358835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 45900850 - 45900890
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  45900850 aacagctaattttaccaaacacattatttttaataagcaag 45900890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 50585585 - 50585545
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  50585585 aacagctaattttaccaaacacattatttttaataagcaag 50585545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 136 - 174
Target Start/End: Complemental strand, 12769957 - 12769919
Alignment:
Q  136 acagctaattttaccaaacacactgtttttaataagcaa 174  Q
    |||||||||||||||||||||| | ||||||||||||||    
T  12769957 acagctaattttaccaaacacattatttttaataagcaa 12769919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 175
Target Start/End: Complemental strand, 47325942 - 47325905
Alignment:
Q  138 agctaattttaccaaacacactgtttttaataagcaag 175  Q
    |||||||||||||||||||| | |||||||||||||||    
T  47325942 agctaattttaccaaacacattatttttaataagcaag 47325905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 3569746 - 3569706
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  3569746 aacaactaattttaccaaacacattatttttaataagcaag 3569706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 11824303 - 11824343
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  11824303 aacatctaattttaccaaacacattatttttaataagcaag 11824343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 27748318 - 27748358
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||| ||| | |||||||||||||||    
T  27748318 aacagctaattttaccaaatacattatttttaataagcaag 27748358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 36740238 - 36740278
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    |||||||||||||| |||||||| | |||||||||||||||    
T  36740238 aacagctaattttatcaaacacattatttttaataagcaag 36740278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 39326327 - 39326367
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||| ||||    
T  39326327 aacagctaattttaccaaacacattatttttaataaacaag 39326367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 46312040 - 46312000
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||| | | |||||||||||||||    
T  46312040 aacagctaattttaccaaacatattatttttaataagcaag 46312000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 338 - 444
Target Start/End: Complemental strand, 31121287 - 31121181
Alignment:
Q  338 ggagaggatccactccggtggaaatctcctcctgttttctcctgtgatataatctcaaccgtccatttcttttaaggacaccttaactaatcttagtcct 437  Q
    |||||||||| ||| | |||||||| |||||| ||||||||||||||   ||||| | ||||||||||||||||| || ||||||| |||||| || |||    
T  31121287 ggagaggatctacttcagtggaaatttcctccagttttctcctgtgaatcaatcttagccgtccatttcttttaatgaaaccttaattaatctcagccct 31121188  T
Q  438 tcattca 444  Q
    |||||||    
T  31121187 tcattca 31121181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 18368967 - 18368927
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  18368967 aacagctaattttaccaaacacattatttttaataagcaag 18368927  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 22708035 - 22708075
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  22708035 aacagctaattttaccaaacacattatttttaataagcaag 22708075  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 24118566 - 24118526
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  24118566 aacagctaattttaccaaacacattatttttaataagcaag 24118526  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 104 - 174
Target Start/End: Complemental strand, 32441697 - 32441627
Alignment:
Q  104 gtcatgtacttttaggtcattttatatttataacagctaattttaccaaacacactgtttttaataagcaa 174  Q
    |||||||| |||||||| ||||||||||||||| || |||||||  |||| | | | ||||||||||||||    
T  32441697 gtcatgtatttttaggttattttatatttataagagttaattttgtcaaatatattatttttaataagcaa 32441627  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 1875356 - 1875316
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  1875356 aacagctaattttaccaaacacattatttttaataagcaag 1875316  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 7455249 - 7455289
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  7455249 aacagctaattttaccaaacacattatttttaataagcaag 7455289  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 16495958 - 16495918
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  16495958 aacagctaattttaccaaacacattatttttaataagcaag 16495918  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 36935433 - 36935393
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  36935433 aacagctaattttaccaaacacattatttttaataagcaag 36935393  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 36986009 - 36985969
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  36986009 aacagctaattttaccaaacacattatttttaataagcaag 36985969  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 42520519 - 42520559
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  42520519 aacagctaattttaccaaacacattatttttaataagcaag 42520559  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 398 - 444
Target Start/End: Complemental strand, 13008022 - 13007976
Alignment:
Q  398 gtccatttcttttaaggacaccttaactaatcttagtccttcattca 444  Q
    ||||||| ||||||| |||||||||||| ||||||| ||||||||||    
T  13008022 gtccattccttttaatgacaccttaactgatcttagcccttcattca 13007976  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 5774811 - 5774851
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  5774811 aacaactaattttaccaaacacattatttttaataagcaag 5774851  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 8876394 - 8876434
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  8876394 aacaactaattttaccaaacacattatttttaataagcaag 8876434  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 10034358 - 10034398
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  10034358 aacaactaattttaccaaacacattatttttaataagcaag 10034398  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 18240073 - 18240109
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataag 171  Q
    ||||||||||||||||||||||| | |||||||||||    
T  18240073 aacagctaattttaccaaacacattatttttaataag 18240109  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 38325047 - 38325083
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataag 171  Q
    ||||||||||||||||||||||| | |||||||||||    
T  38325047 aacagctaattttaccaaacacattatttttaataag 38325083  T

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Target: scaffold0464 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 175
Target Start/End: Original strand, 5386 - 5423
Alignment:
Q  138 agctaattttaccaaacacactgtttttaataagcaag 175  Q
    |||||||||||||||||||| | |||||||||||||||    
T  5386 agctaattttaccaaacacattatttttaataagcaag 5423  T

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Target: scaffold0330 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 7736 - 7776
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  7736 aacaactaattttaccaaacacattatttttaataagcaag 7776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 19090 - 19130
Alignment:
Q  135 aacagctaattttaccaaacacactgtttttaataagcaag 175  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  19090 aacaactaattttaccaaacacattatttttaataagcaag 19130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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