View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_91 (Length: 311)
Name: NF3772_low_91
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_91 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 166 - 307
Target Start/End: Complemental strand, 45158020 - 45157879
Alignment:
| Q |
166 |
gtgaaggaaatgagaaatcccctgcatggaagaagataggtaccaaagagcttggaattcacaattcgtccattggacccgctgcccggaaggttctaaa |
265 |
Q |
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| T |
45158020 |
gtgaaggaaatgagaaatcccctgcatggaagaagataggtaccaaagagcttggaattcacaattcgtccattggacccgctgcccggaaggttctaaa |
45157921 |
T |
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| Q |
266 |
tgggctcaagaaaaggggtacatattattgttcatctcactc |
307 |
Q |
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| T |
45157920 |
tgggctcaagaaaaggggtacgtattattgttcttatcactc |
45157879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 45158167 - 45158100
Alignment:
| Q |
19 |
caattcgtgaagaaggcaagtgaaagcactcaacttaactcaattgttagtggtgaagaaatcaaggg |
86 |
Q |
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| T |
45158167 |
caattcgtgaagaaggcaagtgaaagcactcaacttaactcaattgttagtggtgaagaaatcaaggg |
45158100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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