View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_92 (Length: 310)
Name: NF3772_low_92
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_92 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 12 - 296
Target Start/End: Original strand, 43867369 - 43867653
Alignment:
| Q |
12 |
gtgagatgaaagcaacctaaggagaggggacctcaaatagcagacattattgaattattatacatgtaacacaacaaatatgtcttactcaaaaatttaa |
111 |
Q |
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| T |
43867369 |
gtgagatgaaagcaacctaaggagaggggacctcaaatagcagacattattgaattattatacatgtaacacaacaaatatgtcttactcaaaaatttaa |
43867468 |
T |
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| Q |
112 |
tgcacaaaccctaatgggtccataagaaatcctataattaaaaagacaaccaattagaattcagagaataagattaacttcaactctctagccaatcaac |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43867469 |
tgcacaaaccctaatgggtccataagaaatcctataattaaaaagacaaccaattagaattcagagaataagattaacttcaactctctagccaatcaac |
43867568 |
T |
|
| Q |
212 |
actaagatcataccaattggtgggtcccattaacctccattaatattcctgtagcaaattaccaaaagtgcatgggcagagagaa |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43867569 |
actaagatcataccaattggtgggtcccattaacctccattaatattcctgtagcaaattaccaaaagtgcatgggcagagagaa |
43867653 |
T |
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