View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_95 (Length: 302)
Name: NF3772_low_95
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_95 |
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| [»] scaffold0481 (1 HSPs) |
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Alignment Details
Target: scaffold0481 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: scaffold0481
Description:
Target: scaffold0481; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 286
Target Start/End: Original strand, 8415 - 8691
Alignment:
| Q |
11 |
cagagagaatgaatagttcgtgagatttacacgacaaaatgtgtcgtgcacattagcannnnnnncttgagtatctctttcatcaacaacaagtannnnn |
110 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
8415 |
cagagagaatgaatagttcgtgggatttacacgacaaaatgtgtcgtgcacattagcatttttttcttgagtatctctttcatcaacaacaagtattttt |
8514 |
T |
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| Q |
111 |
nnn-cttcatcatacataaaaagattgacttttgcatgttaaacgccacctttacaattacgtgacgttgtttttagttgaattttattttttggttaaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8515 |
ttttcttcatcatacataaaaagattgacttttgcatgttaaacgccacctttacaattacgtgacgttgtttttagttgaattttattttttggttaaa |
8614 |
T |
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| Q |
210 |
atttacaagttctcttgatataagtatgtaactatgcactaaaacttaggccgtgttattatttatggaagtatttt |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8615 |
atttacaagttctcttgatataagtatgtaactatgcactaaaacttaggccgtgttattatttatggaagtatttt |
8691 |
T |
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Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 12992621 - 12992565
Alignment:
| Q |
12 |
agagagaatgaatagttcgtgagatttacacgacaaaatgtgtcgtgcacattagca |
68 |
Q |
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| T |
12992621 |
agagagaatgaatagttcgtgggatttgcacgacaaaatgtgtcgtgcacattagca |
12992565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 13067271 - 13067215
Alignment:
| Q |
12 |
agagagaatgaatagttcgtgagatttacacgacaaaatgtgtcgtgcacattagca |
68 |
Q |
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||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||| |
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| T |
13067271 |
agagagaatgaatagttcgtgggatttgcacgacaaaatgtgtcgtgcactttagca |
13067215 |
T |
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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 31671974 - 31671918
Alignment:
| Q |
12 |
agagagaatgaatagttcgtgagatttacacgacaaaatgtgtcgtgcacattagca |
68 |
Q |
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||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| |
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| T |
31671974 |
agagagaatgaatagttcgtgggatttgcacgacaaaatttgtcgtgcacattagca |
31671918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 15342738 - 15342687
Alignment:
| Q |
160 |
tttacaattacgtgacgttgtttttagttgaattttattttttggttaaaat |
211 |
Q |
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|||||||||| ||||||||||||||| |||||| ||||||||| | |||||| |
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| T |
15342738 |
tttacaattatgtgacgttgtttttaattgaatcttatttttttggtaaaat |
15342687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 15431803 - 15431752
Alignment:
| Q |
160 |
tttacaattacgtgacgttgtttttagttgaattttattttttggttaaaat |
211 |
Q |
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|||||||||| ||||||||||||||| |||||| ||||||||| | |||||| |
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| T |
15431803 |
tttacaattatgtgacgttgtttttaattgaatcttatttttttggtaaaat |
15431752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 15523107 - 15523056
Alignment:
| Q |
160 |
tttacaattacgtgacgttgtttttagttgaattttattttttggttaaaat |
211 |
Q |
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|||||||||| ||||||||||||||| |||||| ||||||||| | |||||| |
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| T |
15523107 |
tttacaattatgtgacgttgtttttaattgaatcttatttttttggtaaaat |
15523056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 36092359 - 36092415
Alignment:
| Q |
12 |
agagagaatgaatagttcgtgagatttacacgacaaaatgtgtcgtgcacattagca |
68 |
Q |
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||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| |
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| T |
36092359 |
agagagaatgaatagttcgtgggatttgcacaacaaaatgtgtcgtgcacattagca |
36092415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 157
Target Start/End: Complemental strand, 12226328 - 12226291
Alignment:
| Q |
120 |
catacataaaaagattgacttttgcatgttaaacgcca |
157 |
Q |
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|||||| ||||||||||||||||||||| ||||||||| |
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| T |
12226328 |
catacacaaaaagattgacttttgcatgctaaacgcca |
12226291 |
T |
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