View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_97 (Length: 301)
Name: NF3772_low_97
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_97 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 47506884 - 47506610
Alignment:
| Q |
1 |
aaggttatgttaataatggtggatactcacttcatccatgtgagcacactgccccgtgggtttcgggagtgacaaatttgaatgaatagcagcaagagaa |
100 |
Q |
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| T |
47506884 |
aaggttatgttaataatggtggatactcacttcatccatgtgagcacactgccccgtgggtttcgggagtgacaaatttgaatgaatagcagcaagagaa |
47506785 |
T |
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| Q |
101 |
gagaaagggacagtcaaagcattgggatttgtgaatatcaaactctcttattataccataagatcgatgattgaattgaaacagacacacttttaatttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
47506784 |
gagaaagggacagtcaaagcattgggatttgtgaatatcaaa--ctcttattataccataa----gatgattgaattgaaacagacacacttttaatttg |
47506691 |
T |
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| Q |
201 |
ttgaaataagtggtatgggagttagtggttgtggggtatataaactcgttattataagtgtgtcagaaagaaattttttat |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47506690 |
ttgaaataagtggtatgggagttagtggttgtggggtatataaactcgttattataagtgtgtcagaaagaaattttttat |
47506610 |
T |
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