View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_99 (Length: 300)
Name: NF3772_low_99
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_99 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 113 - 291
Target Start/End: Complemental strand, 9630527 - 9630349
Alignment:
| Q |
113 |
actaattactctcctatatggtttagggagatcaagcatcaatagttgaaagtgtaattgattacatcaacgagttacatcaactactacaatgcctaga |
212 |
Q |
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| T |
9630527 |
actaattactctcctatatggtttagggagatcaagcatcaatagttgaaagtgtaattgattacatcaacgagttacatcaactactacaatgcctaga |
9630428 |
T |
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| Q |
213 |
atccaagaaacaaagaaaagtttacaatgaagtaccaagtccaagacctttaccaccaagtcctagaataatctaccca |
291 |
Q |
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| T |
9630427 |
atccaagaaacaaagaaaagtttacaatgaagtaccaagtccaagacctttaccaccaagtcctagaataatcttccca |
9630349 |
T |
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Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 136 - 258
Target Start/End: Original strand, 41257573 - 41257695
Alignment:
| Q |
136 |
tagggagatcaagcatcaatagttgaaagtgtaattgattacatcaacgagttacatcaactactacaatgcctagaatccaagaaacaaagaaaagttt |
235 |
Q |
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| T |
41257573 |
tagggagatcaagcatcaataattggaggtgtagttgattacatcacagagttgcaacaactactccaagcccttgaagccaagaaacaaagaaaagtat |
41257672 |
T |
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| Q |
236 |
acaatgaagtaccaagtccaaga |
258 |
Q |
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| T |
41257673 |
acagtgaagtactaagtccaaga |
41257695 |
T |
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