View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3773_high_2 (Length: 220)
Name: NF3773_high_2
Description: NF3773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3773_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 37445622 - 37445781
Alignment:
| Q |
18 |
gtataaacacatactctcttcgtcccacacttgtttatttcatacaaattaagaaatcgtaaataatcattttggtctctaaatgtgtattatgtgagac |
117 |
Q |
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| T |
37445622 |
gtataaacacatactctcttcgtcccacacttgtttatttcatacaaattaagaaagcgtaaataatcattttggtctctaaatgtgtattatgtgagac |
37445721 |
T |
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| Q |
118 |
catgtcactatagtctatagtaactgtctatatcgaaattataaacatatcctcaaatga |
177 |
Q |
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| T |
37445722 |
catgtcactatagtctatagtaactgtctatatcgaaattataaacatatcctcaaatga |
37445781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 37449504 - 37449464
Alignment:
| Q |
30 |
actctcttcgtcccacacttgtttatttcatacaaattaag |
70 |
Q |
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| T |
37449504 |
actctcttcgtcccacacttgtttatttcatacaaattaag |
37449464 |
T |
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