View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3773_low_5 (Length: 207)
Name: NF3773_low_5
Description: NF3773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3773_low_5 |
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| [»] chr8 (3 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 3 - 207
Target Start/End: Complemental strand, 8207996 - 8207792
Alignment:
| Q |
3 |
ttgctctcatacaatgggataattatatgcctttatattgctagtgaatttggagctaaaattgtgcccccaaaaagaattttgaggatgcttccggaac |
102 |
Q |
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| T |
8207996 |
ttgctctcatacaatgggataattatatgcctttatattgctagtgaatttggagctaaaattgtgcccccaaaaagaattttgaggatgcttccggaac |
8207897 |
T |
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| Q |
103 |
tctttgatcatcaagatcaaaatgttcgtgcatcctctaaagggctgactcttgaactttgtcgctggatcggtaaagaaaatgtaaaatcaatcttgtt |
202 |
Q |
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| T |
8207896 |
tctttgatcaccaagatcaaaatgttcgtgcatcctctaaagggctgactcttgaactttgccgctggatcggtaaagaaaatgtaaaatcaatcttgtt |
8207797 |
T |
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| Q |
203 |
tgaga |
207 |
Q |
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||||| |
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| T |
8207796 |
tgaga |
8207792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 3 - 207
Target Start/End: Complemental strand, 9941538 - 9941334
Alignment:
| Q |
3 |
ttgctctcatacaatgggataattatatgcctttatattgctagtgaatttggagctaaaattgtgcccccaaaaagaattttgaggatgcttccggaac |
102 |
Q |
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||||||||||| |||| |||||||| || ||| ||| |||||||||||||||||||||||| |||||||||||||||||||||| | | |||||||||| |
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| T |
9941538 |
ttgctctcatataatgatataattatctgtcttcatactgctagtgaatttggagctaaaatcgtgcccccaaaaagaattttgaaggttcttccggaac |
9941439 |
T |
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| Q |
103 |
tctttgatcatcaagatcaaaatgttcgtgcatcctctaaagggctgactcttgaactttgtcgctggatcggtaaagaaaatgtaaaatcaatcttgtt |
202 |
Q |
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| T |
9941438 |
tctttgatcaccaagatcaaaatgtcagtgcatcctctaaatggttgactcttgaactttgtcgctaggtctgtaaagataatgtaaaatcaatcttatt |
9941339 |
T |
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| Q |
203 |
tgaga |
207 |
Q |
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||||| |
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| T |
9941338 |
tgaga |
9941334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 43 - 196
Target Start/End: Complemental strand, 9335115 - 9334962
Alignment:
| Q |
43 |
ctagtgaatttggagctaaaattgtgcccccaaaaagaattttgaggatgcttccggaactctttgatcatcaagatcaaaatgttcgtgcatcctctaa |
142 |
Q |
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|||| ||||| ||||| |||||||||||| ||| ||||||||||| ||||||||||||||||| | |||| || |||| ||||||||||| |||| ||| |
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| T |
9335115 |
ctagagaattcggagcaaaaattgtgcccgcaataagaattttgaagatgcttccggaactctataatcaccatgatcgaaatgttcgtggctcctataa |
9335016 |
T |
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| Q |
143 |
agggctgactcttgaactttgtcgctggatcggtaaagaaaatgtaaaatcaat |
196 |
Q |
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| T |
9335015 |
atggttgattcttgaactttatcgctggatcagtaaagatgatgtaaaatcaat |
9334962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 41 - 207
Target Start/End: Complemental strand, 42363096 - 42362930
Alignment:
| Q |
41 |
tgctagtgaatttggagctaaaattgtgcccccaaaaagaattttgaggatgcttccggaactctttgatcatcaagatcaaaatgttcgtgcatcctct |
140 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| ||||||||| |
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| T |
42363096 |
tgctagtgaatttggatctaaaattgtgcccccaaaaagaattttgaaaatgcttccggaactcttcgatcaccaagatcaaaatgttcgcgcatcctct |
42362997 |
T |
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| Q |
141 |
aaagggctgactcttgaactttgtcgctggatcggtaaagaaaatgtaaaatcaatcttgtttgaga |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
42362996 |
aaagggctgactcttgaactttgtcgctggatcggtaaagataatgttaaatcaatcttgtttgaga |
42362930 |
T |
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