View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3774_low_1 (Length: 417)
Name: NF3774_low_1
Description: NF3774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3774_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 131; Significance: 8e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 11 - 207
Target Start/End: Complemental strand, 39305324 - 39305122
Alignment:
| Q |
11 |
catcatcagtacgtttagtgattctgtttgaatattggcatatgattgaatttggacttgttgtgcatattcac---tcagtgcaacttttgtgcaattt |
107 |
Q |
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| T |
39305324 |
catcataagtacgttgagtgattctgtttgaatattggcatatgattgaatttagacttgttgtgcatattcactaattagtgcaacttttgtgcaattt |
39305225 |
T |
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| Q |
108 |
atcattttccttgtcaatattacacga----caatgacaaacaaaagcttcaagatcattttattttgaaaagtggcnnnnnnncattacattaattgta |
203 |
Q |
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| T |
39305224 |
atcattttccttgtcaatattacacgacaatcaatgacaaacaaaagcttcaagatcattttattttgaaaagtggc-aaaaaacattacattaattgta |
39305126 |
T |
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| Q |
204 |
tgtg |
207 |
Q |
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|||| |
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| T |
39305125 |
tgtg |
39305122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 298 - 402
Target Start/End: Complemental strand, 39305031 - 39304927
Alignment:
| Q |
298 |
ccaaacataaaattagcttggtcttactcattcataccaatgccctatggaatcaatctgatcttgcggtcgtaattgtttttgaatcgaatttggagag |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
39305031 |
ccaaacataaaattagcttggtcttactcattcataccaatgccctatggaatcaatctgatcttgctgtcgtaattgtttttgaatcgaatttggagag |
39304932 |
T |
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| Q |
398 |
aaagg |
402 |
Q |
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| T |
39304931 |
aaagg |
39304927 |
T |
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