View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3774_low_2 (Length: 276)
Name: NF3774_low_2
Description: NF3774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3774_low_2 |
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| [»] scaffold0771 (1 HSPs) |
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Alignment Details
Target: scaffold0771 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: scaffold0771
Description:
Target: scaffold0771; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 10 - 256
Target Start/End: Original strand, 3523 - 3765
Alignment:
| Q |
10 |
tgaaatgtagcaagtggtgctgtttacatgtagttgttgcaatgcatgcatgtcacattatgttatagtcccacatcgactaatatgataatataggaat |
109 |
Q |
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| T |
3523 |
tgaaatgtagcaagtggtgctgtttacatgtagttgttgcaatgc----atgtcacattatgttattgtcccacatcgactaatatgataatataggaat |
3618 |
T |
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| Q |
110 |
aattgggagctataagaatagaagaataacaagtgaaagagcatgatccttcaggcagaaatgggatatgatgagtggttgagtctcgcacataatatgc |
209 |
Q |
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| T |
3619 |
aattgggagctataagaatagaagaataccaagtgaaagagcatgatccttcaggcagaaatgggatatgatgagaggttgagtctcgcacataatatgc |
3718 |
T |
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| Q |
210 |
gtgttgggtgttcgccccaagcctggttacgacaattgggcactctc |
256 |
Q |
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| T |
3719 |
gagttgggtgttcgccccaagcctggttacgacaattgggcactctc |
3765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 10 - 256
Target Start/End: Original strand, 13951383 - 13951625
Alignment:
| Q |
10 |
tgaaatgtagcaagtggtgctgtttacatgtagttgttgcaatgcatgcatgtcacattatgttatagtcccacatcgactaatatgataatataggaat |
109 |
Q |
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| T |
13951383 |
tgaaatgtagcaagtggtgctgtttacatgtagttgttgcaatgc----atgtcacattatgttattgtcccacatcgactaatatgataatataggaat |
13951478 |
T |
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| Q |
110 |
aattgggagctataagaatagaagaataacaagtgaaagagcatgatccttcaggcagaaatgggatatgatgagtggttgagtctcgcacataatatgc |
209 |
Q |
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| T |
13951479 |
aattgggagctataagaatagaagaataccaagtgaaagagcatgatccttcaggcagaaatgggatatgatgagaggttgagtctcgcacataatatgc |
13951578 |
T |
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| Q |
210 |
gtgttgggtgttcgccccaagcctggttacgacaattgggcactctc |
256 |
Q |
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| T |
13951579 |
gagttgggtgttcgccccaagcctggttacgacaattgggcactctc |
13951625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 20 - 260
Target Start/End: Original strand, 20199006 - 20199243
Alignment:
| Q |
20 |
caagtggtgctgtttacatgtagttgttgcaatgcatgcatgtcacattatgttatagtcccacatcgactaatatgataatataggaataattggga-g |
118 |
Q |
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| T |
20199006 |
caagtggtgctgtttacatgtagttgcagcaatgcgtg----tgacgttatttcatagtcccacatcgattaaaatgagaatataggaataattgggttg |
20199101 |
T |
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| Q |
119 |
ctataagaatagaagaataacaagtgaaagagcatgatccttcaggcagaaatgggatatgatgagtggttgagtctcgcacataatatgcgtgttgggt |
218 |
Q |
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| T |
20199102 |
ctataagaatagaagattaacaagtgaaaaagcatgatccttcaggcagaaacgggatatgatgagtggttgagtctcgcacataatatgcgagttgggt |
20199201 |
T |
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| Q |
219 |
gttcgccccaagcctggttacgacaattgggcactctcattt |
260 |
Q |
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| T |
20199202 |
gttcgccccaagcctggttacgacaattgggcactctcattt |
20199243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 54 - 258
Target Start/End: Original strand, 20903426 - 20903630
Alignment:
| Q |
54 |
catgcatgtcacattatgttatagtcccacatcgactaatatgataatataggaataattggga-gctataagaatagaagaataacaagtgaaagagca |
152 |
Q |
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| T |
20903426 |
catgcatgtgacgttatgttatagtcccacatcgagtaaaatgagaatataggaataattgggttgctataagaatagaagattaacaagtaaaaaggca |
20903525 |
T |
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| Q |
153 |
tgatccttcaggcagaaatgggatatgatgagtggttgagtctcgcacataatatgcgtgttgggtgttcgccccaagcctggttacgacaattgggcac |
252 |
Q |
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| T |
20903526 |
tgatccttcaggcagaaacgggatatgatgagtggttgagtctcgca-ataatatgcgagttgggtgttcgccccaagcctggttacgacaattgggcac |
20903624 |
T |
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| Q |
253 |
tctcat |
258 |
Q |
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| T |
20903625 |
tctcat |
20903630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 35 - 199
Target Start/End: Original strand, 20206481 - 20206649
Alignment:
| Q |
35 |
acatgtagttgttgcaatgcatgcatgtcacattatgttatagtcccacatcgactaatatgataatataggaataattgggag-------ctataagaa |
127 |
Q |
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| T |
20206481 |
acatgtagttgttgcaatgcgtg----tcacgttatgttatagtcccacattgaataatatgacaatataggaataattggggggggggggctataagaa |
20206576 |
T |
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| Q |
128 |
tagaagaataacaagtgaaagagcatgatccttcaggcagaaatgggatatgatgagtgg-ttgagtctcgca |
199 |
Q |
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| T |
20206577 |
tagaagattagcaagtgataaatcatgatccttcaggcagaaatgggatatgatgactggtttgagtctcgca |
20206649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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