View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3775_high_12 (Length: 227)
Name: NF3775_high_12
Description: NF3775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3775_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 38556012 - 38555802
Alignment:
| Q |
1 |
caattaaaaaacaaatatagtatgttttttgctaattaattaagtaatgttatctcaaaataacaataattaagttttgaatggtataacaaacttgttt |
100 |
Q |
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| T |
38556012 |
caattaaaaaacaaatatcgtatgttttttgctaattaattaagtaatgttatctcaaaataataataattaagttttgaatggtataacaaacttgttt |
38555913 |
T |
|
| Q |
101 |
aagatatcaatcaataatccaaaattccgtaatggtgtatgaatgtagacatcaaataacagacaataaacatgacgatttcgtcctttaaacaaatgac |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38555912 |
aagatatcaattaataatccaaaattccgtaatggtgtatgaatgtagacatcaaataacagacaataaacatgacgatttcgtcctttaaacaaatgac |
38555813 |
T |
|
| Q |
201 |
gatgatacatg |
211 |
Q |
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||||||||||| |
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| T |
38555812 |
gatgatacatg |
38555802 |
T |
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