View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3775_low_11 (Length: 250)

Name: NF3775_low_11
Description: NF3775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3775_low_11
NF3775_low_11
[»] chr4 (16 HSPs)
chr4 (1-243)||(5572650-5572892)
chr4 (1-243)||(5584857-5585099)
chr4 (153-243)||(5540787-5540877)
chr4 (10-141)||(5856598-5856729)
chr4 (25-139)||(253340-253452)
chr4 (3-139)||(5563240-5563376)
chr4 (4-121)||(5557456-5557573)
chr4 (3-139)||(5603938-5604074)
chr4 (10-121)||(3747444-3747555)
chr4 (1-53)||(5890965-5891017)
chr4 (4-64)||(5896745-5896805)
chr4 (4-121)||(5551691-5551808)
chr4 (3-68)||(5849668-5849732)
chr4 (4-121)||(5854590-5854707)
chr4 (4-88)||(5612057-5612141)
chr4 (4-64)||(5887894-5887954)
[»] chr8 (1 HSPs)
chr8 (3-121)||(1481680-1481798)


Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 5572892 - 5572650
Alignment:
Q  1 agctgcacaggaatttcaccagccaaagtgttatttgagaggtctaaggactccaattgtttcaagttccctatggaagatgggatttttcctgagagac 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5572892 agctgcacaggaatttcaccagtcaaagtgttatttgagaggtctaaggactccaattgtttcaagttccctatggaagatgggattttacctgagagac 5572793  T
Q  101 ggttgtttgaaatgttgagaatgtaaagtgctttgaagttccctattgaatatggtatttcgccttcaaaatggttggacgagaggtcgacggctgtgaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||| || || |||| ||||| ||  |||||    
T  5572792 ggttgtttgaaatgttgagaatgtaaagtgctttgaagttccctattgaatatggtataggtccttcaaaatgattcgatgagaagtcgatggaagtgaa 5572693  T
Q  201 gaccgttaaaattttaacgtactccatctgttgacctttgctt 243  Q
    ||| |||| |||||||||  | |||||||||||||||||||||    
T  5572692 gactgttagaattttaactaaatccatctgttgacctttgctt 5572650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 5585099 - 5584857
Alignment:
Q  1 agctgcacaggaatttcaccagccaaagtgttatttgagaggtctaaggactccaattgtttcaagttccctatggaagatgggatttttcctgagagac 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5585099 agctgcacaggaatttcaccagtcaaagtgttatttgagaggtctaaggactccaattgtttcaagttccctatggaagatgggattttacctgagagac 5585000  T
Q  101 ggttgtttgaaatgttgagaatgtaaagtgctttgaagttccctattgaatatggtatttcgccttcaaaatggttggacgagaggtcgacggctgtgaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||| || || |||| ||||| ||  |||||    
T  5584999 ggttgtttgaaatgttgagaatgtaaagtgctttgaagttccctattgaatatggtataggtccttcaaaatgattcgatgagaagtcgatggaagtgaa 5584900  T
Q  201 gaccgttaaaattttaacgtactccatctgttgacctttgctt 243  Q
    ||| |||| |||||||||  | |||||||||||||||||||||    
T  5584899 gactgttagaattttaactaaatccatctgttgacctttgctt 5584857  T

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Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 153 - 243
Target Start/End: Complemental strand, 5540877 - 5540787
Alignment:
Q  153 tggtatttcgccttcaaaatggttggacgagaggtcgacggctgtgaagaccgttaaaattttaacgtactccatctgttgacctttgctt 243  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5540877 tggtatttcgccttcaaaatggttggatgagaggtcgacggctgtgaagactgttaaaattttaacgtactccatctgttgacctttgctt 5540787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 141
Target Start/End: Original strand, 5856598 - 5856729
Alignment:
Q  10 ggaatttcaccagccaaagtgttatttgagaggtctaaggactccaattgtttcaagttccctatggaagatgggatttttcctgagagacggttgtttg 109  Q
    ||||||||||||  ||||| |||||||||||||||||| |||||||| ||||||||||| || || |||||||||||||  ||||||||||  |||||||    
T  5856598 ggaatttcaccaatcaaagagttatttgagaggtctaatgactccaactgtttcaagtttccaatagaagatgggatttcacctgagagacaattgtttg 5856697  T
Q  110 aaatgttgagaatgtaaagtgctttgaagttc 141  Q
    ||| ||||||||  | ||||||||||||||||    
T  5856698 aaaagttgagaacatgaagtgctttgaagttc 5856729  T

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Target: chr4; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 139
Target Start/End: Complemental strand, 253452 - 253340
Alignment:
Q  25 aaagtgttatttgagaggtctaaggactccaattgtttcaagttccctatggaagatgggatttttcctgagagacggttgtttgaaatgttgagaatgt 124  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||  |||  |||||  |||||||||| |||||||   |    
T  253452 aaagagttatttgagaggtctaaggactctaattgtttcaagttccctatagaagacgggatttcgcct--gagaccattgtttgaaaagttgagagcat 253355  T
Q  125 aaagtgctttgaagt 139  Q
    ||||| |||||||||    
T  253354 aaagttctttgaagt 253340  T

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Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 5563240 - 5563376
Alignment:
Q  3 ctgcacaggaatttcaccagccaaagtgttatttgagaggtctaaggactccaattgtttcaagttccctatggaagatgggatttttcctgagagacgg 102  Q
    |||||||||||| | |||| ||| || ||||||||||||||| ||||||||||| ||||||| |||||| || |  ||||| ||||  || ||||||       
T  5563240 ctgcacaggaatcttaccaaccagagagttatttgagaggtccaaggactccaactgtttcaggttcccgatagttgatggaatttcaccagagagagca 5563339  T
Q  103 ttgtttgaaatgttgagaatgtaaagtgctttgaagt 139  Q
    |||||||||| ||||||||  ||||||||||||||||    
T  5563340 ttgtttgaaaagttgagaacataaagtgctttgaagt 5563376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 121
Target Start/End: Original strand, 5557456 - 5557573
Alignment:
Q  4 tgcacaggaatttcaccagccaaagtgttatttgagaggtctaaggactccaattgtttcaagttccctatggaagatgggatttttcctgagagacggt 103  Q
    ||||| |||||||||||| |||| | ||||||||||||||| ||||||||||| ||||||| |||||| || |  ||||||||||  || ||||||   |    
T  5557456 tgcactggaatttcaccaaccaatgagttatttgagaggtccaaggactccaactgtttcaggttcccaatagttgatgggatttcaccagagagagcat 5557555  T
Q  104 tgtttgaaatgttgagaa 121  Q
    ||||||||| ||||||||    
T  5557556 tgtttgaaaagttgagaa 5557573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 5603938 - 5604074
Alignment:
Q  3 ctgcacaggaatttcaccagccaaagtgttatttgagaggtctaaggactccaattgtttcaagttccctatggaagatgggatttttcctgagagacgg 102  Q
    ||||||||||||| ||||| ||| |  ||||||||||||||| || |||||||| ||||||| |||||| |  |  ||||||||||  ||  ||||||      
T  5603938 ctgcacaggaattccaccaaccagaaagttatttgagaggtccaaagactccaactgtttcaggttcccaacagttgatgggatttcaccatagagacca 5604037  T
Q  103 ttgtttgaaatgttgagaatgtaaagtgctttgaagt 139  Q
    |||||||||| ||||||||  ||||||||||||||||    
T  5604038 ttgtttgaaaagttgagaacataaagtgctttgaagt 5604074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 121
Target Start/End: Original strand, 3747444 - 3747555
Alignment:
Q  10 ggaatttcaccagccaaagtgttatttgagaggtctaaggactccaattgtttcaagttccctatggaagatgggatttttcctgagagacggttgtttg 109  Q
    |||||||||||| |||| | ||||||||||||||| |||||||| || ||||||||||| ||||| |  ||||| ||||  || ||||||  ||||||||    
T  3747444 ggaatttcaccaaccaatgagttatttgagaggtccaaggactctaactgtttcaagtttcctatagttgatggaatttcaccagagagattgttgtttg 3747543  T
Q  110 aaatgttgagaa 121  Q
    ||| ||||||||    
T  3747544 aaaagttgagaa 3747555  T

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Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 5891017 - 5890965
Alignment:
Q  1 agctgcacaggaatttcaccagccaaagtgttatttgagaggtctaaggactc 53  Q
    ||||||||||||||||||||| |||||| ||||||||||||||| ||||||||    
T  5891017 agctgcacaggaatttcaccaaccaaagagttatttgagaggtccaaggactc 5890965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 5896805 - 5896745
Alignment:
Q  4 tgcacaggaatttcaccagccaaagtgttatttgagaggtctaaggactccaattgtttca 64  Q
    ||||| |||||||||||| |||||| ||||||||||||||| |||||||| | ||||||||    
T  5896805 tgcaccggaatttcaccaaccaaagagttatttgagaggtccaaggactctagttgtttca 5896745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 121
Target Start/End: Original strand, 5551691 - 5551808
Alignment:
Q  4 tgcacaggaatttcaccagccaaagtgttatttgagaggtctaaggactccaattgtttcaagttccctatggaagatgggatttttcctgagagacggt 103  Q
    |||||||| ||| ||||| |||| | |||||||||||||||||| ||||| || ||||||| |||||| || |  ||||||||||  || |||| ||  |    
T  5551691 tgcacaggtattacaccaaccaaggagttatttgagaggtctaatgactctaactgtttcaggttcccaatagttgatgggatttcaccggagataccat 5551790  T
Q  104 tgtttgaaatgttgagaa 121  Q
    |||| |||| ||||||||    
T  5551791 tgttcgaaaagttgagaa 5551808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 5849732 - 5849668
Alignment:
Q  3 ctgcacaggaatttcaccagccaaagtgttatttgagaggtctaaggactccaattgtttcaagtt 68  Q
    ||||||||||||| ||||| |||||| ||||||||||||||| |||||||| |  |||||||||||    
T  5849732 ctgcacaggaatt-caccaaccaaagagttatttgagaggtccaaggactctagctgtttcaagtt 5849668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 121
Target Start/End: Complemental strand, 5854707 - 5854590
Alignment:
Q  4 tgcacaggaatttcaccagccaaagtgttatttgagaggtctaaggactccaattgtttcaagttccctatggaagatgggatttttcctgagagacggt 103  Q
    |||||||| ||| ||||| |||| | |||||||||||||||||| ||||| || ||||||| |||||| || |  ||||||||||  || |||| |   |    
T  5854707 tgcacaggtattacaccaaccaaggagttatttgagaggtctaatgactctaactgtttcaggttcccgatagttgatgggatttcaccagagaaagcat 5854608  T
Q  104 tgtttgaaatgttgagaa 121  Q
    ||||||||| ||||||||    
T  5854607 tgtttgaaaagttgagaa 5854590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 88
Target Start/End: Original strand, 5612057 - 5612141
Alignment:
Q  4 tgcacaggaatttcaccagccaaagtgttatttgagaggtctaaggactccaattgtttcaagttccctatggaagatgggattt 88  Q
    |||| ||||||||||||| |||| | ||| ||||||| ||| |||||||| || ||||||| |||||| || |  ||||||||||    
T  5612057 tgcagaggaatttcaccaaccaaggagttgtttgagaagtccaaggactctaactgtttcaggttcccaatagttgatgggattt 5612141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 5887954 - 5887894
Alignment:
Q  4 tgcacaggaatttcaccagccaaagtgttatttgagaggtctaaggactccaattgtttca 64  Q
    |||| ||||||||||||| |||| | ||| ||||||||||| |||||||| || |||||||    
T  5887954 tgcagaggaatttcaccaaccaaggagttgtttgagaggtccaaggactctaactgtttca 5887894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 121
Target Start/End: Original strand, 1481680 - 1481798
Alignment:
Q  3 ctgcacaggaatttcaccagccaaagtgttatttgagaggtctaaggactccaattgtttcaagttccctatggaagatgggatttttcctgagagacgg 102  Q
    |||||||||||||| |||   ||||| |||||||||||||||||||||||| || ||||||| |||||| || |  ||||||||||  || |||| |       
T  1481680 ctgcacaggaattttaccgaacaaagagttatttgagaggtctaaggactctaactgtttcaggttcccaatagtcgatgggatttcaccggagaaagca 1481779  T
Q  103 ttgtttgaaatgttgagaa 121  Q
    |||||||||| ||||||||    
T  1481780 ttgtttgaaaagttgagaa 1481798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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