View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3775_low_12 (Length: 235)

Name: NF3775_low_12
Description: NF3775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3775_low_12
NF3775_low_12
[»] chr4 (14 HSPs)
chr4 (1-221)||(5573014-5573234)
chr4 (1-221)||(5585221-5585441)
chr4 (56-222)||(5557089-5557255)
chr4 (51-206)||(5603588-5603743)
chr4 (56-185)||(5562911-5563040)
chr4 (53-194)||(5856247-5856388)
chr4 (67-185)||(5611727-5611845)
chr4 (67-197)||(5849946-5850076)
chr4 (56-185)||(5888146-5888275)
chr4 (56-170)||(5551373-5551487)
chr4 (71-185)||(5897024-5897138)
chr4 (57-170)||(5891158-5891270)
chr4 (56-169)||(5854911-5855024)
chr4 (53-152)||(253677-253776)
[»] chr8 (2 HSPs)
chr8 (67-220)||(1481316-1481469)
chr8 (1-35)||(1481522-1481556)


Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 5573014 - 5573234
Alignment:
Q  1 tatggacctccattgactgaaaaaccagatggtaaaaggaatgatgagttgctatcttgttcaacagactggaattttttaagtgtagaattggggtttg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5573014 tatggacctccattgactgaaaaaccagatggtaaaaggaatgatgagttgctatcttgttcaacagactggaaatttttaagtgtagaattggggtttg 5573113  T
Q  101 tttttggtctcggaattgtcattggtcctctcatgttttggaagcaatggaggataagatattggaaactagtggataaaattctttgctggatcttttc 200  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5573114 tttttggtctcggaattgtcattggtcctctaatgttttggaagcaatggaggataagatattggaaactagtggataaaattctttgctggatcttttc 5573213  T
Q  201 aaggattcatcttgaatatgt 221  Q
    |||||||||||||||||||||    
T  5573214 aaggattcatcttgaatatgt 5573234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 5585221 - 5585441
Alignment:
Q  1 tatggacctccattgactgaaaaaccagatggtaaaaggaatgatgagttgctatcttgttcaacagactggaattttttaagtgtagaattggggtttg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5585221 tatggacctccattgactgaaaaaccagatggtaaaaggaatgatgagttgctatcttgttcaacagactggaaatttttaagtgtagaattggggtttg 5585320  T
Q  101 tttttggtctcggaattgtcattggtcctctcatgttttggaagcaatggaggataagatattggaaactagtggataaaattctttgctggatcttttc 200  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5585321 tttttggtctcggaattgtcattggtcctctaatgttttggaagcaatggaggataagatattggaaactagtggataaaattctttgctggatcttttc 5585420  T
Q  201 aaggattcatcttgaatatgt 221  Q
    |||||||||||||||||||||    
T  5585421 aaggattcatcttgaatatgt 5585441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 56 - 222
Target Start/End: Complemental strand, 5557255 - 5557089
Alignment:
Q  56 cttgttcaacagactggaattttttaagtgtagaattggggtttgtttttggtctcggaattgtcattggtcctctcatgttttggaagcaatggaggat 155  Q
    |||||||||  |||||||||||| ||||||||||| |||| ||||| |||||  ||||||| |||||| ||||  | ||||||||||||||||||||| |    
T  5557255 cttgttcaattgactggaattttataagtgtagaactgggatttgtgtttggattcggaatagtcatttgtcccataatgttttggaagcaatggagggt 5557156  T
Q  156 aagatattggaaactagtggataaaattctttgctggatcttttcaaggattcatcttgaatatgtt 222  Q
    ||  |||| |||||| ||||| |||||||||||||||||||||||||||||  ||||||||||||||    
T  5557155 aaattatttgaaacttgtggacaaaattctttgctggatcttttcaaggatgtatcttgaatatgtt 5557089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 51 - 206
Target Start/End: Complemental strand, 5603743 - 5603588
Alignment:
Q  51 gctatcttgttcaacagactggaattttttaagtgtagaattggggtttgtttttggtctcggaattgtcattggtcctctcatgttttggaagcaatgg 150  Q
    |||| |||||||||  |||||||||||| ||||||| |||||||| ||  ||||||| || ||||||||||||  |||  |||||||||||||||| |||    
T  5603743 gctagcttgttcaattgactggaattttataagtgtggaattgggattcatttttgggcttggaattgtcatttatcccatcatgttttggaagcattgg 5603644  T
Q  151 aggataagatattggaaactagtggataaaattctttgctggatcttttcaaggat 206  Q
    ||| |||  ||||||||||| ||||| |||| |||||||||||| || ||||||||    
T  5603643 agggtaaagtattggaaacttgtggacaaaactctttgctggattttctcaaggat 5603588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 56 - 185
Target Start/End: Complemental strand, 5563040 - 5562911
Alignment:
Q  56 cttgttcaacagactggaattttttaagtgtagaattggggtttgtttttggtctcggaattgtcattggtcctctcatgttttggaagcaatggaggat 155  Q
    |||||||||  |||||||||||||||||||| |||||||| ||||||||||| ||||||||  || ||||||| ||| ||||||||||| |||||||  |    
T  5563040 cttgttcaattgactggaattttttaagtgtggaattgggatttgtttttgggctcggaatcatcgttggtcccctcttgttttggaagaaatggagagt 5562941  T
Q  156 aagatattggaaactagtggataaaattct 185  Q
    ||| ||||||||||| || || ||||||||    
T  5562940 aagttattggaaactcgtagacaaaattct 5562911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 194
Target Start/End: Complemental strand, 5856388 - 5856247
Alignment:
Q  53 tatcttgttcaacagactggaattttttaagtgtagaattggggtttgtttttggtctcggaattgtcattggtcctctcatgttttggaagcaatggag 152  Q
    ||||||||| ||  || ||||||||||||||||| ||| | || ||| ||||||| || |||| ||| ||||||||  ||||||||||||||||||||||    
T  5856388 tatcttgtttaattgattggaattttttaagtgtggaactaggatttatttttgggcttggaagtgttattggtcccatcatgttttggaagcaatggag 5856289  T
Q  153 gataagatattggaaactagtggataaaattctttgctggat 194  Q
    | || | |||||||||||  |||| |||||||||||||||||    
T  5856288 ggtaggttattggaaactcatggacaaaattctttgctggat 5856247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 185
Target Start/End: Complemental strand, 5611845 - 5611727
Alignment:
Q  67 gactggaattttttaagtgtagaattggggtttgtttttggtctcggaattgtcattggtcctctcatgttttggaagcaatggaggataagatattgga 166  Q
    |||||||||||||||||||| || ||||| ||||||||||| ||||||||  |||| ||||||||  ||||||||||| |||||||  |||| |||||||    
T  5611845 gactggaattttttaagtgtggagttgggatttgtttttgggctcggaatcatcatcggtcctcttttgttttggaagaaatggagagtaagttattgga 5611746  T
Q  167 aactagtggataaaattct 185  Q
    |||| || || ||||||||    
T  5611745 aactcgtagacaaaattct 5611727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 197
Target Start/End: Original strand, 5849946 - 5850076
Alignment:
Q  67 gactggaattttttaagtgtagaattggggtttgtttttggtctcggaattgtcattggtcctctcatgttttggaagcaatggaggataagatattgga 166  Q
    |||||||||||||||||||| || ||||| ||||||||||| ||||||||| ||||   ||| ||| ||||||||||| |||||||  |||| |||||||    
T  5849946 gactggaattttttaagtgtggagttgggatttgtttttgggctcggaattatcatcactcccctcttgttttggaagaaatggagagtaagttattgga 5850045  T
Q  167 aactagtggataaaattctttgctggatctt 197  Q
    |||| || || |||||||| || ||||||||    
T  5850046 aactcgtagacaaaattctatgttggatctt 5850076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 56 - 185
Target Start/End: Original strand, 5888146 - 5888275
Alignment:
Q  56 cttgttcaacagactggaattttttaagtgtagaattggggtttgtttttggtctcggaattgtcattggtcctctcatgttttggaagcaatggaggat 155  Q
    |||||||||  || ||||||||||||||||| |||||||| ||| ||||||| || |||||  || ||||||| ||| ||||||||||| |||||||  |    
T  5888146 cttgttcaattgaatggaattttttaagtgtggaattgggatttatttttggacttggaatcatcgttggtcccctcttgttttggaagaaatggagagt 5888245  T
Q  156 aagatattggaaactagtggataaaattct 185  Q
    ||| ||||||||||| || || ||||||||    
T  5888246 aagttattggaaactcgtagacaaaattct 5888275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 56 - 170
Target Start/End: Complemental strand, 5551487 - 5551373
Alignment:
Q  56 cttgttcaacagactggaattttttaagtgtagaattggggtttgtttttggtctcggaattgtcattggtcctctcatgttttggaagcaatggaggat 155  Q
    |||||||||  |||||||||||||||||||| || ||||| ||||||||||| || |||||  ||||  |||| ||| ||||||||||| |||||||  |    
T  5551487 cttgttcaattgactggaattttttaagtgtggagttgggatttgtttttgggcttggaatcatcatctgtcccctcttgttttggaagaaatggagagt 5551388  T
Q  156 aagatattggaaact 170  Q
    ||| |||||||||||    
T  5551387 aagctattggaaact 5551373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 71 - 185
Target Start/End: Original strand, 5897024 - 5897138
Alignment:
Q  71 ggaattttttaagtgtagaattggggtttgtttttggtctcggaattgtcattggtcctctcatgttttggaagcaatggaggataagatattggaaact 170  Q
    |||||||||||||||| |||||||| ||| ||||||| || |||||  || ||||||| ||| ||||||||||| |||||||  |||| |||||||||||    
T  5897024 ggaattttttaagtgtggaattgggatttatttttggacttggaatcatcgttggtcccctcttgttttggaagaaatggagagtaagttattggaaact 5897123  T
Q  171 agtggataaaattct 185  Q
     || || ||||||||    
T  5897124 cgtagacaaaattct 5897138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 57 - 170
Target Start/End: Original strand, 5891158 - 5891270
Alignment:
Q  57 ttgttcaacagactggaattttttaagtgtagaattggggtttgtttttggtctcggaattgtcattggtcctctcatgttttggaagcaatggaggata 156  Q
    ||||||||  || ||||||||||||||||| || ||||| |||||||||||  |||||||  |||||||||| ||| || |||||||| |||||||  ||    
T  5891158 ttgttcaattgattggaattttttaagtgtggagttgggatttgtttttgggttcggaatcatcattggtcccctcttg-tttggaagaaatggagagta 5891256  T
Q  157 agatattggaaact 170  Q
    || |||||||||||    
T  5891257 agttattggaaact 5891270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 169
Target Start/End: Original strand, 5854911 - 5855024
Alignment:
Q  56 cttgttcaacagactggaattttttaagtgtagaattggggtttgtttttggtctcggaattgtcattggtcctctcatgttttggaagcaatggaggat 155  Q
    |||||||||  |||||||||||||| ||| | || ||||| ||||||||||| ||||||||  ||||||||||   | |||||||||||| ||||||  |    
T  5854911 cttgttcaattgactggaattttttgagtatggagttgggatttgtttttgggctcggaatcatcattggtcccaccttgttttggaagcgatggagagt 5855010  T
Q  156 aagatattggaaac 169  Q
    | | ||||||||||    
T  5855011 atgttattggaaac 5855024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 152
Target Start/End: Original strand, 253677 - 253776
Alignment:
Q  53 tatcttgttcaacagactggaattttttaagtgtagaattggggtttgtttttggtctcggaattgtcattggtcctctcatgttttggaagcaatggag 152  Q
    ||||||||||||  || ||||||||||||||| | ||| | || ||||||||||| || |||||| |||||||| | || || |||| ||| ||||||||    
T  253677 tatcttgttcaattgattggaattttttaagtatggaacttggatttgtttttgggcttggaattttcattggttcccttatatttttgaaacaatggag 253776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 67 - 220
Target Start/End: Complemental strand, 1481469 - 1481316
Alignment:
Q  67 gactggaattttttaagtgtagaattggggtttgtttttggtctcggaattgtcattggtcctctcatgttttggaagcaatggaggataagatattgga 166  Q
    |||||||||||| ||||||| ||||| || ||| |||| || || |||||  |||| | |||| |||||| |||||||||||||||| |||| ||||||     
T  1481469 gactggaattttctaagtgtggaattaggatttattttcggactaggaatcatcatcgttcctatcatgtcttggaagcaatggagggtaaggtattggc 1481370  T
Q  167 aactagtggataaaattctttgctggatcttttcaaggattcatcttgaatatg 220  Q
    || | ||||| |||||||||||||||||||||||||||||  ||||||||||||    
T  1481369 aagttgtggacaaaattctttgctggatcttttcaaggatgaatcttgaatatg 1481316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 1481556 - 1481522
Alignment:
Q  1 tatggacctccattgactgaaaaaccagatggtaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  1481556 tatggacctccattgactgaaaaaccagatggtaa 1481522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University