View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3775_low_2 (Length: 565)
Name: NF3775_low_2
Description: NF3775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3775_low_2 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 512; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 13 - 548
Target Start/End: Complemental strand, 7767808 - 7767273
Alignment:
| Q |
13 |
catcagaaaagacccatcaaccaatctattctacacatcagttggcataggaactcctagaacaaatttcaatctagccattgatcttgctggagaaaat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7767808 |
catcagaaaagacccatcaaccaatctattctacacatcagttggcataggaactcctagaacaaatttcaatctagccattgatcttgctggagaaaat |
7767709 |
T |
|
| Q |
113 |
ctatggtatgattgtgacactcattataattcatcatcatacactcctattcaatgtggctcaacaagatgcacagatacttcatgtgttggctgcaatg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
7767708 |
ctatggtatgattgtgacactcattataattcatcatcatacactcctattcaatgtggctcaacaagatgtacagatactgcatgtgttggctgcaatg |
7767609 |
T |
|
| Q |
213 |
gcccattcaagccaggttgcacaaacaacacatgtgctgcttctgcaaccaactcattagctaaattcatttttggtggtggccttggtcaagatttcat |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7767608 |
gcccattcaagccaggttgcacaaacaacacatgtgctgcttctgcaaccaactcattagctaaattcatttttggtggtggccttggtgaagatttcat |
7767509 |
T |
|
| Q |
313 |
tttcatttctcaacaaaaagtttctggcttactctcaagttgcattgatattgatggattttcatctaccgctgaggatgattcaccactcaatggctta |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7767508 |
tttcatttctcaacaaaaagtttctggcttactctcaagttgcattgatattgatggattttcatctaccgctgaggatgattcaccactcaatggctta |
7767409 |
T |
|
| Q |
413 |
ccaaaaaatactaaaggaatttttggtcttgcaagatcaaacctttcactaccaactcagcttgcattgaaaaacaagcttcaacctaaattctctcttt |
512 |
Q |
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| T |
7767408 |
ccaaaaaacactaaaggaatttttggtcttgcaagatcaaacctttcactaccaactcaacttgcattgaaaaacaagcttcaaccaaaattctctcttt |
7767309 |
T |
|
| Q |
513 |
gtttgccttcttcaaacaaacaaggattcactaact |
548 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
7767308 |
gtttgccttcttcaaacaaacaaggattcactaact |
7767273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 548
Target Start/End: Complemental strand, 7775129 - 7774600
Alignment:
| Q |
19 |
aaaagacccatcaaccaatctattctacacatcagttggcataggaactcctagaacaaatttcaatctagccattgatcttgctggagaaaatctatgg |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
7775129 |
aaaagacccatcaaccaatctattctacacatcagttggcataggaactcctagaacaaatttcaatctagccattgatcttgctggagaaaacctttgg |
7775030 |
T |
|
| Q |
119 |
tatgattgtgacactcattataattcatcatcatacactcctattcaatgtggctcaacaagatgcacagatacttcatgtgttggctgcaatggcccat |
218 |
Q |
| |
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||||||||| |||||||||||||||||||||| |||| ||| ||| |||||||||| |||||| ||||| | ||||| |||| || |||||||||| |
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| T |
7775029 |
tatgattgtaacactcattataattcatcatcctacattccaattgcatgtggctcagaaagatgttcagatgttgcatgtattggttgtaatggcccat |
7774930 |
T |
|
| Q |
219 |
tcaagccaggttgcacaaacaacacatgtgctgcttctgcaaccaactcattagctaaattcatttttggtggtggccttggtcaagatttcattttcat |
318 |
Q |
| |
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|||| || |||||||||||||| |||||| ||||| ||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
7774929 |
tcaaacctggttgcacaaacaatacatgtcctgctactgcaaccaactcattagccaaattcatttttggtggtgaccttggtgaagatttcattttcat |
7774830 |
T |
|
| Q |
319 |
ttctcaacaaaaagtttctggcttactctcaagttgcattgatattgatggattttcatctaccgctgaggatgattcaccactcaatggcttaccaaaa |
418 |
Q |
| |
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||| |||||||||||||||||||| ||||||||||||||||| |||||| || || |||| | ||| || |||||||||||||| |||||||||||| |
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| T |
7774829 |
ttcacaacaaaaagtttctggcttgctctcaagttgcattgacattgatagacttccatcattcactggagaggattcaccactcaacggcttaccaaaa |
7774730 |
T |
|
| Q |
419 |
aatactaaaggaatttttggtcttgcaagatcaaacctttcactaccaactcagcttgcattgaaaaacaagcttcaacctaaattctctctttgtttgc |
518 |
Q |
| |
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| |||||||||||| |||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||| || ||||||||||||||||| | |
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| T |
7774729 |
atcactaaaggaattattggtctttcaagatcaaacctttcactaccaacacaacttgcattgaaaaacaagcttccacacaaattctctctttgtttac |
7774630 |
T |
|
| Q |
519 |
cttcttcaaacaaacaaggattcactaact |
548 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
7774629 |
cttcttcaaacaaacaaggattcactaact |
7774600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 204 - 253
Target Start/End: Original strand, 7725737 - 7725786
Alignment:
| Q |
204 |
gctgcaatggcccattcaagccaggttgcacaaacaacacatgtgctgct |
253 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||||||| |||| |
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| T |
7725737 |
gctgcaatggccctttcaaaccaggttgcacaaacaacacatgtggtgct |
7725786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 7698626 - 7698673
Alignment:
| Q |
19 |
aaaagacccatcaaccaatctattctacacatcagttggcataggaac |
66 |
Q |
| |
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||||||||||| ||||||||| |||||||| ||||||||||| ||||| |
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| T |
7698626 |
aaaagacccattaaccaatcttttctacacctcagttggcattggaac |
7698673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 253
Target Start/End: Complemental strand, 7746758 - 7746709
Alignment:
| Q |
204 |
gctgcaatggcccattcaagccaggttgcacaaacaacacatgtgctgct |
253 |
Q |
| |
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|||||||||||| ||||| ||||||||| ||||||||||||||| |||| |
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| T |
7746758 |
gctgcaatggccatttcaaaccaggttgctcaaacaacacatgtggtgct |
7746709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 166; Significance: 1e-88; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 20 - 548
Target Start/End: Original strand, 10971 - 11484
Alignment:
| Q |
20 |
aaagacccatcaaccaatctattctacacatcagttggcataggaactcctagaacaaatttcaatctagccattgatcttgctggagaaaatctatggt |
119 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| ||| ||| ||||| ||||||||||| || |||||||| |||| |
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| T |
10971 |
aaagacccatcaaccaatcttttctacacatcagttggcataggaacacctcgaaaaaatt-----------attgatcttgcaggtgaaaatctttggt |
11059 |
T |
|
| Q |
120 |
atgattgtgacactcattataattcatcatcatacactcctattcaatgtggctcaacaagatgcacagatacttcatgtgttggctgcaatggcccatt |
219 |
Q |
| |
|
|||||||||||||||| || ||||||||||| || ||| ||| |||||||||||| || ||| |||||| | |||| |||| ||||||||||| || |
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| T |
11060 |
atgattgtgacactcactacaattcatcatcctattttccaattgaatgtggctcaaaaaaatgtccagatattacatgcattggttgcaatggcccctt |
11159 |
T |
|
| Q |
220 |
caagccaggttgcacaaacaacacatgtgctgcttctgcaaccaactcattagctaaattcatttttggtggtggccttggtcaagatttcattttcatt |
319 |
Q |
| |
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||| ||||||||||||||||| |||||| ||||| | ||| ||||||||| || ||||||||||| ||||||||| ||| ||||| |||| || | |
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| T |
11160 |
caaaccaggttgcacaaacaatacatgtcctgctaatacaatcaactcatttgccaaattcattttcaatggtggcctcggtgaagatatcatatttgtc |
11259 |
T |
|
| Q |
320 |
tctcaacaaaaagtttctggcttactctcaagttgcattgatattgatggattttcatctaccgctgaggatgattcaccactcaatggcttaccaaaaa |
419 |
Q |
| |
|
|||||||||||||| |||||| || || | ||| ||||| |||||||| ||| | || | | || ||||||||||||||||||||||||| |||| |
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|
| T |
11260 |
gatcaacaaaaagtttttggcttgctttctacttgtattgacattgatggttttccgtcattcaccgacaatgattcaccactcaatggcttacctaaaa |
11359 |
T |
|
| Q |
420 |
atactaaaggaatttttggtcttgcaagatcaaacctttcactaccaactcagcttgcattgaaaaacaagcttcaacctaaattctctctttgtttgcc |
519 |
Q |
| |
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|||| ||||||||| ||||||||||||||||||| |||||| || || ||||| |||| ||||||||||| ||||||||||||||||||||| || |
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| T |
11360 |
ataccaaaggaattattggtcttgcaagatcaaaatattcact----acacaacttgccttgagaaacaagcttccacctaaattctctctttgtttacc |
11455 |
T |
|
| Q |
520 |
ttcttcaaacaaacaaggattcactaact |
548 |
Q |
| |
|
||| |||||||||||||||||||| |||| |
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| T |
11456 |
ttcctcaaacaaacaaggattcacaaact |
11484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 3e-65; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 258 - 548
Target Start/End: Complemental strand, 21268565 - 21268275
Alignment:
| Q |
258 |
caaccaactcattagctaaattcatttttggtggtggccttggtcaagatttcattttcatttctcaacaaaaagtttctggcttactctcaagttgcat |
357 |
Q |
| |
|
|||||||||||| || |||||||||||||||||| ||||| | ||||||| ||||||||||| ||||||||||||| |||||| ||||| ||||||| |
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| T |
21268565 |
caaccaactcatcagtcaaattcatttttggtggtaaccttgatgaagatttgattttcatttcacaacaaaaagtttatggcttgctctcttgttgcat |
21268466 |
T |
|
| Q |
358 |
tgatattgatggattttcatctaccgctgaggatgattcaccactcaatggcttaccaaaaaatactaaaggaatttttggtcttgcaagatcaaacctt |
457 |
Q |
| |
|
| | | | || || |||| ||| ||||||| | ||||||||||||||||||| || ||||||||| ||| ||||||||||||||||||| |
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| T |
21268465 |
tcacaggagtagacttccatcattaactggcagtgattcataattcaatggcttaccaaaaaacaccaaaggaattattgttcttgcaagatcaaacctt |
21268366 |
T |
|
| Q |
458 |
tcactaccaactcagcttgcattgaaaaacaagcttcaacctaaattctctctttgtttgccttcttcaaacaaacaaggattcactaact |
548 |
Q |
| |
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|||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21268365 |
tcactaccaactcaacttgcattgaaaaacaaggttcaacctagattctctctttgtttgccttcttcaaacaaacaaggattcactaact |
21268275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 402 - 548
Target Start/End: Original strand, 54302743 - 54302890
Alignment:
| Q |
402 |
tcaatggcttaccaaaaaatactaaaggaatttttggtcttgcaagatcaaacctttcactaccaactcagcttgcattgaaaaacaagcttcaacctaa |
501 |
Q |
| |
|
|||||||||||||| |||| || ||||||||| ||| ||||| |||||||||| | | ||||||||| || |||||||||||||||||||||| |||||| |
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| T |
54302743 |
tcaatggcttaccagaaaacaccaaaggaattattgttcttgtaagatcaaacatattactaccaacacaacttgcattgaaaaacaagcttccacctaa |
54302842 |
T |
|
| Q |
502 |
att-ctctctttgtttgccttcttcaaacaaacaaggattcactaact |
548 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
54302843 |
attcctctctttgtttgccttcttcaaacaaacaaagattcactaact |
54302890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 342
Target Start/End: Original strand, 54302596 - 54302687
Alignment:
| Q |
250 |
tgcttctgcaaccaactcattagctaaattcatttttggtggtggccttggtcaagatttcattttcatttctcaacaaaaagtttctggctt |
342 |
Q |
| |
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|||| ||||||| |||||||| | |||||| ||||||||| | ||||| | ||||||| ||||||||||| |||||||||||||||||||| |
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| T |
54302596 |
tgctactgcaactaactcattccc-aaattcctttttggtgttaaccttgatgaagatttaattttcatttcacaacaaaaagtttctggctt |
54302687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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