View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3775_low_4 (Length: 410)
Name: NF3775_low_4
Description: NF3775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3775_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 51295116 - 51294866
Alignment:
| Q |
18 |
aaggaaagggaatccagtgctttttctgtaggtataccaaagttacagattcgcactagaaaagtagaacgttataaggtagacaccaaatgatctagct |
117 |
Q |
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| T |
51295116 |
aaggaaagggaatccagtgctttttctgtaggtataccaaagttacagattcgcactagaaaagtagaacgttataaggtagacaccaaatgatctagct |
51295017 |
T |
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| Q |
118 |
atatgactgcaaagttaatttcattcatgtgatgtgcttactagaaattgctagatatgccgtaaataacctaaaccctaaatatttccttaacatnnnn |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
51295016 |
atatgactgcaaagttaatttcattcatgtgatgtgcttactagaaattgctagatatgtcttaaataacctaaaccctaaatatttccttaacataaaa |
51294917 |
T |
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| Q |
218 |
nnngctaaccaaaataaaacaagacggagttgttacataataaaatattgg |
268 |
Q |
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| T |
51294916 |
aaagctaaccaaaataaaacaagacggagttgttacataataaaatattgg |
51294866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 347 - 405
Target Start/End: Complemental strand, 51294784 - 51294728
Alignment:
| Q |
347 |
ttattttgatattcaatgtcattgtaatcatattagtataccctatccatctctctgtg |
405 |
Q |
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| T |
51294784 |
ttattttgatattcaatgtcattgtaatcatattag--taccctatccatctctttgtg |
51294728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 202
Target Start/End: Complemental strand, 2597963 - 2597910
Alignment:
| Q |
149 |
atgtgcttactagaaattgctagatatgccgtaaataacctaaaccctaaatat |
202 |
Q |
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|||||||||||||||||| || ||| | || |||||||||||||| |||||||| |
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| T |
2597963 |
atgtgcttactagaaattacttgatgtaccttaaataacctaaactctaaatat |
2597910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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