View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3775_low_5 (Length: 399)
Name: NF3775_low_5
Description: NF3775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3775_low_5 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 17 - 399
Target Start/End: Complemental strand, 35840454 - 35840072
Alignment:
| Q |
17 |
atgaagtcactgtaggacgtgttccagagaaagctgatttagtgatcccggttgcaacaggtatacaagttcaagttgataaactgttatgtattttgat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35840454 |
atgaagtcactgtaggacgtgttccagagaaagctgatttagtgatcccggttgcaacaggtatacaagttcaagttgataaactgttatgtattttgat |
35840355 |
T |
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| Q |
117 |
tcttatttttcttacagttacaaacattttttccactgaaagaagctccttaatcttaatctactatgctttgtttatgttccagagaatcacaatgtaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35840354 |
tcttatttttcttacagttacaaacattttttccactgaaagaagctccttaatcttaatctactatgctttgtttatgttccagagaatcacaatgtaa |
35840255 |
T |
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| Q |
217 |
ttgaataaattgttttgtatttacagtgtcaggtgtgcatgcacgcattcggataaaacaagacaatcttcttgttatagatttggatagcaccaatgga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35840254 |
ttgaataaattgttttgtatttacagtgtcaggtgtgcatgcacgcattcggataaaacaagacaatcttcttgttatagatttggatagcaccaatgga |
35840155 |
T |
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| Q |
317 |
acattcattggtgacaaaaggctgaaacctggagtagttaccactgtatcttctgggagttatattacctttgctactcctct |
399 |
Q |
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| T |
35840154 |
acattcattggtgacaaaaggctgaaacctggagtagttaccactgtatcttctgggagttatattacttttggtactactct |
35840072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 17 - 399
Target Start/End: Complemental strand, 35897171 - 35896789
Alignment:
| Q |
17 |
atgaagtcactgtaggacgtgttccagagaaagctgatttagtgatcccggttgcaacaggtatacaagttcaagttgataaactgttatgtattttgat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35897171 |
atgaagtcactgtaggacgtgttccagagaaagctgatttagtgatcccggttgcaacaggtatacaagttcaagttgataaactgttatgtattttgat |
35897072 |
T |
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| Q |
117 |
tcttatttttcttacagttacaaacattttttccactgaaagaagctccttaatcttaatctactatgctttgtttatgttccagagaatcacaatgtaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35897071 |
tcttatttttcttacagttacaaacattttttccactgaaagaagctccttaatcttaatctactatgctttgtttatgttccagagaatcacaatgtaa |
35896972 |
T |
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| Q |
217 |
ttgaataaattgttttgtatttacagtgtcaggtgtgcatgcacgcattcggataaaacaagacaatcttcttgttatagatttggatagcaccaatgga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35896971 |
ttgaataaattgttttgtatttacagtgtcaggtgtgcatgcacgcattcggataaaacaagacaatcttcttgttatagatttggatagcaccaatgga |
35896872 |
T |
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| Q |
317 |
acattcattggtgacaaaaggctgaaacctggagtagttaccactgtatcttctgggagttatattacctttgctactcctct |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||| |
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| T |
35896871 |
acattcattggtgacaaaaggctgaaacctggagtagttaccactgtatcttctgggagttatattacttttggtactactct |
35896789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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