View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3775_low_7 (Length: 337)
Name: NF3775_low_7
Description: NF3775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3775_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 20 - 329
Target Start/End: Original strand, 42743825 - 42744133
Alignment:
| Q |
20 |
aaccaccttgcgacattgtaatactttttatttgaaagaatgaatacaggagatacatgtctc--tctcttaattattgcttcccattctatgatgtgtt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
42743825 |
aaccaccttgcgacattgtaatactttttatttgaaagaatgaatacaggagatacatgtctctctctcttaattattgcttccctttctatgatgtgtt |
42743924 |
T |
|
| Q |
118 |
ggaaaatgtgttcaaaacttatttatctgagttagtttgattcaatgttaattatcaaagatatatatgtggattttcctagtaattaaagaacactttg |
217 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
42743925 |
ggaaaatgtgttcaaaacttatttgtctgagttagtttgattcaatgttaattatcaaagatatatatgtggcttttcctag----taaagaacactttg |
42744020 |
T |
|
| Q |
218 |
gtgatgcattcta-gaataaaatgaagtgcaacccagctgctgccacccttctatttgctgtgtaagccatttccgttgttgcttgagctcggtcattgt |
316 |
Q |
| |
|
|||||||||||| ||| ||||| |||||||| |||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
42744021 |
atgatgcattctatgaaaaaaataaagtgcaatccagctgctgccacccttctctttgctgtctaagtcatttccgttgttgcttgagctcggtcattgt |
42744120 |
T |
|
| Q |
317 |
ccccatctctgct |
329 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
42744121 |
ccccatttctgct |
42744133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University