View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3775_low_8 (Length: 332)

Name: NF3775_low_8
Description: NF3775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3775_low_8
NF3775_low_8
[»] chr3 (6 HSPs)
chr3 (32-332)||(7948725-7949025)
chr3 (32-93)||(27513655-27513716)
chr3 (45-98)||(41319316-41319368)
chr3 (44-98)||(13799505-13799558)
chr3 (56-101)||(34409359-34409403)
chr3 (56-100)||(12704674-12704717)
[»] chr5 (9 HSPs)
chr5 (32-107)||(38749556-38749630)
chr5 (43-98)||(38866454-38866510)
chr5 (59-99)||(4014795-4014835)
chr5 (56-107)||(43208291-43208341)
chr5 (28-78)||(18592093-18592143)
chr5 (32-78)||(41558647-41558693)
chr5 (56-96)||(11596472-11596511)
chr5 (58-98)||(28296329-28296368)
chr5 (46-98)||(32630742-32630793)
[»] chr2 (6 HSPs)
chr2 (46-101)||(18570970-18571024)
chr2 (56-108)||(7803433-7803484)
chr2 (35-83)||(28341865-28341913)
chr2 (54-98)||(40681983-40682026)
chr2 (33-79)||(12668417-12668463)
chr2 (46-98)||(37402091-37402143)
[»] chr7 (6 HSPs)
chr7 (44-98)||(38134411-38134464)
chr7 (41-98)||(1334899-1334956)
chr7 (33-98)||(32308121-32308185)
chr7 (56-93)||(36013815-36013852)
chr7 (45-78)||(19930947-19930980)
chr7 (57-85)||(32115414-32115442)
[»] chr4 (6 HSPs)
chr4 (32-98)||(18513234-18513299)
chr4 (43-98)||(14465298-14465352)
chr4 (55-110)||(44796978-44797032)
chr4 (56-110)||(5654608-5654661)
chr4 (28-98)||(35723373-35723443)
chr4 (44-107)||(56049869-56049930)
[»] chr6 (3 HSPs)
chr6 (43-100)||(30866148-30866204)
chr6 (32-78)||(9024169-9024215)
chr6 (38-96)||(9617437-9617494)
[»] chr1 (5 HSPs)
chr1 (35-100)||(6427349-6427413)
chr1 (32-101)||(26777370-26777439)
chr1 (56-101)||(24176817-24176862)
chr1 (39-107)||(19637760-19637827)
chr1 (46-98)||(40747780-40747831)
[»] scaffold0022 (1 HSPs)
scaffold0022 (35-107)||(99885-99956)
[»] scaffold0004 (1 HSPs)
scaffold0004 (46-101)||(100997-101052)
[»] chr8 (2 HSPs)
chr8 (39-98)||(10002163-10002222)
chr8 (45-81)||(14229557-14229593)


Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 32 - 332
Target Start/End: Complemental strand, 7949025 - 7948725
Alignment:
Q  32 tccgacacgactccgacacatacaattacattgaattatgtcatttttctcaaactattatcggtgttgatatgtctgtccgtttcatgtccatatccga 131  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7949025 tccgacacgactctgacacatacaattacattgaattatgtcatttttctcaaactattatcggtgttgatatgtctgtccgtttcatgtccatatccga 7948926  T
Q  132 gtcattgtttcataggttgtaattcataacaacaccacacaagtgaaacagttcttatagagaacacaaaaatgttaaatctaataacagaatcagttaa 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  7948925 gtcattgtttcataggttgtaattcataacaacaccacacaagtgaaacaattcttatagagaacataaaaatgttaaatctaataacagaatcagttaa 7948826  T
Q  232 ttctgtttatttagttacattttctgtttgttccatttccatatataaatctttgaatcattcacaaatcaattaatgaattcattcattatttcttcac 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  7948825 ttctgtttatttagttacattttctgtttgttccatttccatatataaatctttgaatcattcacaaatcaatcaatgaattcattcattatttcttcac 7948726  T
Q  332 t 332  Q
    |    
T  7948725 t 7948725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 27513655 - 27513716
Alignment:
Q  32 tccgacacgactccgacacatacaattacattgaattatgtcatttttctcaaactattatc 93  Q
    ||||||| ||| ||||||||||  |||||||||||| ||||||||||||||||| |||||||    
T  27513655 tccgacaagacaccgacacatatgattacattgaataatgtcatttttctcaaattattatc 27513716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 41319316 - 41319368
Alignment:
Q  45 cgacacatacaattacattgaattatgtcatttttctcaaactattatcggtgt 98  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||| |||||    
T  41319316 cgacacatacaattacattgaattatgtcattttt-tcaaattattattggtgt 41319368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 98
Target Start/End: Complemental strand, 13799558 - 13799505
Alignment:
Q  44 ccgacacatacaattacattgaattatgtcatttttctcaaactattatcggtgt 98  Q
    ||||||||||  |||||| | |||||||||||||| |||||||||||||||||||    
T  13799558 ccgacacatattattacacttaattatgtcatttt-ctcaaactattatcggtgt 13799505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 34409359 - 34409403
Alignment:
Q  56 attacattgaattatgtcatttttctcaaactattatcggtgttga 101  Q
    ||||||||||||||||||| ||||||| || |||||||||||||||    
T  34409359 attacattgaattatgtca-ttttctcgaagtattatcggtgttga 34409403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 12704674 - 12704717
Alignment:
Q  56 attacattgaattatgtcatttttctcaaactattatcggtgttg 100  Q
    |||||||||||||||||||||||| ||||| ||||||| ||||||    
T  12704674 attacattgaattatgtcattttt-tcaaattattatccgtgttg 12704717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 107
Target Start/End: Original strand, 38749556 - 38749630
Alignment:
Q  32 tccgacacgactccgacacatacaattacattgaattatgtcatttttctcaaactattatcggtgttgatatgtc 107  Q
    |||||||| || || ||||||| ||||||||||||||||||||||||| ||||| |||||||||||| || |||||    
T  38749556 tccgacacaacaccaacacatataattacattgaattatgtcattttt-tcaaattattatcggtgtcgacatgtc 38749630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 38866510 - 38866454
Alignment:
Q  43 tccgacacatacaa-ttacattgaattatgtcatttttctcaaactattatcggtgt 98  Q
    ||||||||||| || ||||||||||||||||||||||| ||||| ||||||||||||    
T  38866510 tccgacacatataaattacattgaattatgtcatttttttcaaaatattatcggtgt 38866454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 4014795 - 4014835
Alignment:
Q  59 acattgaattatgtcatttttctcaaactattatcggtgtt 99  Q
    |||||||||||||||||||||||||||  ||||||||||||    
T  4014795 acattgaattatgtcatttttctcaaatcattatcggtgtt 4014835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 43208291 - 43208341
Alignment:
Q  56 attacattgaattatgtcatttttctcaaactattatcggtgttgatatgtc 107  Q
    ||||||||||||||||||| |||||||||| || ||||||||||||| ||||    
T  43208291 attacattgaattatgtca-ttttctcaaattactatcggtgttgatgtgtc 43208341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 18592143 - 18592093
Alignment:
Q  28 cgactccgacacgactccgacacatacaattacattgaattatgtcatttt 78  Q
    |||| |||||||||| ||| |||||| |||||||||||||||||| |||||    
T  18592143 cgacaccgacacgacaccggcacatataattacattgaattatgtaatttt 18592093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 41558647 - 41558693
Alignment:
Q  32 tccgacacgactccgacacatacaattacattgaattatgtcatttt 78  Q
    ||||||||||| | |||||||  ||||||||||||||||||||||||    
T  41558647 tccgacacgacactgacacatttaattacattgaattatgtcatttt 41558693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 11596472 - 11596511
Alignment:
Q  56 attacattgaattatgtcatttttctcaaactattatcggt 96  Q
    ||||||||||||||||||| |||||||||| ||||||||||    
T  11596472 attacattgaattatgtca-ttttctcaaattattatcggt 11596511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 28296368 - 28296329
Alignment:
Q  58 tacattgaattatgtcatttttctcaaactattatcggtgt 98  Q
    ||||||||||||||||| |||||||||| ||||||||||||    
T  28296368 tacattgaattatgtca-ttttctcaaattattatcggtgt 28296329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 32630742 - 32630793
Alignment:
Q  46 gacacatacaattacattgaattatgtcatttttctcaaactattatcggtgt 98  Q
    |||||||| |||||||||||||||| | | |||||||||| ||||||||||||    
T  32630742 gacacatataattacattgaattatat-aattttctcaaattattatcggtgt 32630793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 101
Target Start/End: Complemental strand, 18571024 - 18570970
Alignment:
Q  46 gacacatacaattacattgaattatgtcatttttctcaaactattatcggtgttga 101  Q
    ||||||||  ||||||||||||||||||| |||||||||| |||||||||||||||    
T  18571024 gacacatatgattacattgaattatgtca-ttttctcaaattattatcggtgttga 18570970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 7803433 - 7803484
Alignment:
Q  56 attacattgaattatgtcatttttctcaaactattatcggtgttgatatgtct 108  Q
    |||| ||||||||||||||| ||| |||||||||||||||||||| |||||||    
T  7803433 attatattgaattatgtcatcttt-tcaaactattatcggtgttggtatgtct 7803484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 28341865 - 28341913
Alignment:
Q  35 gacacgactccgacacatacaattacattgaattatgtcatttttctca 83  Q
    |||||||| ||||||  || |||||||||||||||||||||||||||||    
T  28341865 gacacgacaccgacatctataattacattgaattatgtcatttttctca 28341913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 40682026 - 40681983
Alignment:
Q  54 caattacattgaattatgtcatttttctcaaactattatcggtgt 98  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||    
T  40682026 caattacattgaattatgtca-ttttctcaaattattatcggtgt 40681983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 12668417 - 12668463
Alignment:
Q  33 ccgacacgactccgacacatacaattacattgaattatgtcattttt 79  Q
    |||||||||| ||||||| || ||||||| |||||||||||||||||    
T  12668417 ccgacacgacaccgacacttataattacactgaattatgtcattttt 12668463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 37402091 - 37402143
Alignment:
Q  46 gacacatacaattacattgaattatgtcatttttctcaaactattatcggtgt 98  Q
    ||||||||  |||||||||||||||||||||||| | ||| ||| ||||||||    
T  37402091 gacacatatgattacattgaattatgtcattttttttaaattataatcggtgt 37402143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 38134411 - 38134464
Alignment:
Q  44 ccgacacatacaattacattgaattatgtcatttttctcaaactattatcggtgt 98  Q
    ||||||||||  ||||||||||||||||||| |||||||||| ||||||||||||    
T  38134411 ccgacacatatgattacattgaattatgtca-ttttctcaaattattatcggtgt 38134464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 1334899 - 1334956
Alignment:
Q  41 actccgacacatacaattacattgaattatgtcatttttctcaaactattatcggtgt 98  Q
    ||||| ||||||| || |||||||||||||||||||||| ||||| |||||| |||||    
T  1334899 actccaacacatataaatacattgaattatgtcatttttttcaaattattattggtgt 1334956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 98
Target Start/End: Complemental strand, 32308185 - 32308121
Alignment:
Q  33 ccgacacgactccgacacatacaattacattgaattatgtcatttttctcaaactattatcggtgt 98  Q
    |||||||||| | |||||||||||||||| |||||||||| | |||||||||| ||||| ||||||    
T  32308185 ccgacacgacactgacacatacaattacactgaattatgtga-ttttctcaaattattagcggtgt 32308121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 36013815 - 36013852
Alignment:
Q  56 attacattgaattatgtcatttttctcaaactattatc 93  Q
    |||||||||||||||||||||||||||||| |||||||    
T  36013815 attacattgaattatgtcatttttctcaaattattatc 36013852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 19930947 - 19930980
Alignment:
Q  45 cgacacatacaattacattgaattatgtcatttt 78  Q
    ||||||||| ||||||||||||||||||||||||    
T  19930947 cgacacatataattacattgaattatgtcatttt 19930980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 85
Target Start/End: Original strand, 32115414 - 32115442
Alignment:
Q  57 ttacattgaattatgtcatttttctcaaa 85  Q
    |||||||||||||||||||||||||||||    
T  32115414 ttacattgaattatgtcatttttctcaaa 32115442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 18513234 - 18513299
Alignment:
Q  32 tccgacacgactccgacacatacaattacattgaattatgtcatttttctcaaactattatcggtgt 98  Q
    |||||||| || | ||||||||  ||||||||||||||||||| |||||||||| ||||||||||||    
T  18513234 tccgacacaacactgacacatatgattacattgaattatgtca-ttttctcaaattattatcggtgt 18513299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 98
Target Start/End: Original strand, 14465298 - 14465352
Alignment:
Q  43 tccgacacatacaattacattgaattatgtcatttttctcaaactattatcggtgt 98  Q
    |||||||||||  |||| |||||||||||||| |||||||||| ||||||||||||    
T  14465298 tccgacacatatgattaaattgaattatgtca-ttttctcaaattattatcggtgt 14465352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 55 - 110
Target Start/End: Original strand, 44796978 - 44797032
Alignment:
Q  55 aattacattgaattatgtcatttttctcaaactattatcggtgttgatatgtctgt 110  Q
    |||||||||||||||||| | |||||||||| |||| |||||||||| ||||||||    
T  44796978 aattacattgaattatgtta-ttttctcaaattattgtcggtgttgacatgtctgt 44797032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 110
Target Start/End: Original strand, 5654608 - 5654661
Alignment:
Q  56 attacattgaattatgtcatttttctcaaactattatcggtgttgatatgtctgt 110  Q
    ||||||||||||||||||| |||||||||| ||||||| |||| || ||||||||    
T  5654608 attacattgaattatgtca-ttttctcaaattattatcagtgtcgacatgtctgt 5654661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 35723373 - 35723443
Alignment:
Q  28 cgactccgacacgactccgacacatacaattacattgaattatgtcatttttctcaaactattatcggtgt 98  Q
    |||| |||| ||||| | |||||||| ||||||||||||||||||   |||||||||| ||||| ||||||    
T  35723373 cgacaccgatacgacactgacacatataattacattgaattatgtgtattttctcaaattattagcggtgt 35723443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 56049930 - 56049869
Alignment:
Q  44 ccgacacatacaattacattgaattatgtcatttttctcaaactattatcggtgttgatatgtc 107  Q
    ||||||||||  ||||||||||| |||||||  ||||||||| |||||||||||| ||| ||||    
T  56049930 ccgacacatatgattacattgaactatgtca--tttctcaaattattatcggtgtcgatgtgtc 56049869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 30866148 - 30866204
Alignment:
Q  43 tccgacacatacaattacattgaattatgtcatttttctcaaactattatcggtgttg 100  Q
    ||||||||||| |||||||||||||||||| | |||||||||| ||||| ||||||||    
T  30866148 tccgacacatataattacattgaattatgtga-ttttctcaaattattagcggtgttg 30866204  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 9024169 - 9024215
Alignment:
Q  32 tccgacacgactccgacacatacaattacattgaattatgtcatttt 78  Q
    ||||||||||| | ||||||||  |||||||||||||||||||||||    
T  9024169 tccgacacgacactgacacatatgattacattgaattatgtcatttt 9024215  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 9617494 - 9617437
Alignment:
Q  38 acgactccgacacatacaattacattgaattatgtcatttttctcaaactattatcggt 96  Q
    ||||| |||||||||| |||||||||||||||||| | |||||||||| ||||| ||||    
T  9617494 acgacaccgacacatataattacattgaattatgtga-ttttctcaaattattaccggt 9617437  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 6427413 - 6427349
Alignment:
Q  35 gacacgactccgacacatacaattacattgaattatgtcatttttctcaaactattatcggtgttg 100  Q
    |||||||| || ||||||| |||||||||||||||||| | |||||||||| ||||| ||||||||    
T  6427413 gacacgacaccaacacatataattacattgaattatgtga-ttttctcaaattattagcggtgttg 6427349  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 26777370 - 26777439
Alignment:
Q  32 tccgacacgactccgacacatacaattacattgaattatgtcatttttctcaaactattatcggtgttga 101  Q
    ||||||||||| || ||||||   |||||||| ||||| ||||||||| ||||| |||||||||||||||    
T  26777370 tccgacacgacacccacacatgtgattacattcaattaagtcatttttttcaaattattatcggtgttga 26777439  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 24176862 - 24176817
Alignment:
Q  56 attacattgaattatgtcatttttctcaaactattatcggtgttga 101  Q
    |||||||| ||| ||||||||||||||||| | |||||||||||||    
T  24176862 attacattaaatcatgtcatttttctcaaaattttatcggtgttga 24176817  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 19637827 - 19637760
Alignment:
Q  39 cgactccgacacatacaattacattgaattatgtcatttttctcaaactattatcggtgttgatatgtc 107  Q
    |||| ||||||||||  |||||||||||| |||||| |||||| ||| |||||||||||| ||| ||||    
T  19637827 cgacaccgacacatatgattacattgaataatgtca-ttttcttaaattattatcggtgtcgatgtgtc 19637760  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 40747780 - 40747831
Alignment:
Q  46 gacacatacaattacattgaattatgtcatttttctcaaactattatcggtgt 98  Q
    ||||| || |||||||||||||||||||| |||||||||| ||||||| ||||    
T  40747780 gacacctataattacattgaattatgtca-ttttctcaaattattatccgtgt 40747831  T

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Target: scaffold0022 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 99956 - 99885
Alignment:
Q  35 gacacgactccgacacatacaattacattgaattatgtcatttttctcaaactattatcggtgttgatatgtc 107  Q
    |||||||| || ||||||| |||||||||||||||||| | |||||| ||| |||||||||||| || |||||    
T  99956 gacacgacaccaacacatataattacattgaattatgtta-ttttctaaaattattatcggtgtcgacatgtc 99885  T

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Target: scaffold0004 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 101
Target Start/End: Complemental strand, 101052 - 100997
Alignment:
Q  46 gacacatacaattacattgaattatgtcatttttctcaaactattatcggtgttga 101  Q
    |||||||| |||||||||||||||||||||||||   ||| ||| |||||||||||    
T  101052 gacacatataattacattgaattatgtcattttttaaaaaatatcatcggtgttga 100997  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 10002163 - 10002222
Alignment:
Q  39 cgactccgacacatacaattacattgaattatgtcatttttctcaaactattatcggtgt 98  Q
    |||| |||||||||   |||||||| ||||||||||||||| ||||| ||||||||||||    
T  10002163 cgacaccgacacatgtgattacattaaattatgtcatttttttcaaattattatcggtgt 10002222  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 14229593 - 14229557
Alignment:
Q  45 cgacacatacaattacattgaattatgtcatttttct 81  Q
    |||||||| | ||||||||||||||||||||||||||    
T  14229593 cgacacatgcgattacattgaattatgtcatttttct 14229557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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