View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3775_low_9 (Length: 313)
Name: NF3775_low_9
Description: NF3775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3775_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 301
Target Start/End: Original strand, 51320203 - 51320478
Alignment:
| Q |
17 |
aagaggaagctattgcccaatcccctgttgctgctgccatagaaatacaccttttatatgttcctggatattttgaacttcatattatcattacattccc |
116 |
Q |
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| T |
51320203 |
aagaggaagctattgcccaatcccctgttgctgctgccatagaaatacaccttttatatgttcctggatattttgaacttcatattatcattacattccc |
51320302 |
T |
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| Q |
117 |
aaacatgtataaaaaggatccaataaaatttgacttaaaattaactaaacaaacgttgttgatagatgatgaggtcgcactacaaaaatagacatcaagg |
216 |
Q |
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| T |
51320303 |
aaacatgtataaaaaggatccaataaaatttgacttaaa-ttaactaaacaaacgttgttgatagatgatgaggtcgcactacaaaaatagacatcaagg |
51320401 |
T |
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| Q |
217 |
ttcctgtgaaatatatatatagaaatacatacatacataggttgggatgttgttaaacaaacgtaccgtcctcaggagctgatga |
301 |
Q |
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| T |
51320402 |
ttcctgtgaaatatatagata----tac----atacataggttgggatgttgttaaacaaacgtaccgtcctcaggagctgatga |
51320478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 51344226 - 51344275
Alignment:
| Q |
33 |
ccaatcccctgttgctgctgccatagaaatacaccttttatatgttcctg |
82 |
Q |
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| T |
51344226 |
ccaatccccttttgctgctgccatacaaataatctttttatatgttcctg |
51344275 |
T |
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