View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3776_high_2 (Length: 472)
Name: NF3776_high_2
Description: NF3776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3776_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-165; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 2747359 - 2747036
Alignment:
| Q |
18 |
atgcaaagtttctataactatcaaaatcttcatcaatcataagcaatataataagtaggccaaattttctttgtgcaacttatattgtattgttgttgat |
117 |
Q |
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| T |
2747359 |
atgcaaagtttctataactatcaaaatcttcatcaatcataagcaata--ataagtaggccaaattttctttgtgcaacttatattgtaatgttgttgat |
2747262 |
T |
|
| Q |
118 |
tctctcttgtcactaattcaccattttattttaatggttgcagttggtatctttggatctttgtggtcatatttttgttgcttaatatcaatggtatgat |
217 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2747261 |
tctctcttgtcactaactcaccattttattttaatggttgcagttggtatctttggatctttgtggtcatatttatgttgcttaatatcaatggtatgat |
2747162 |
T |
|
| Q |
218 |
acaaagacttggaacaatagaagtcac-attatgtcattgtccaacaatcaaaattaagatttatgtttattgtttcaggttggcacacatacttttggg |
316 |
Q |
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| T |
2747161 |
acaaagacttggaacaatagaagtcacaattatgtcattgtccaacaatcaaaattaagatttatgtttattgtttcaggttggcacacatacttttggg |
2747062 |
T |
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| Q |
317 |
ttgctttcattcctgtcattgtaagt |
342 |
Q |
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|||||||||||||||||||||||||| |
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| T |
2747061 |
ttgctttcattcctgtcattgtaagt |
2747036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 75 - 215
Target Start/End: Complemental strand, 2755363 - 2755223
Alignment:
| Q |
75 |
ggccaaattttctttgtgcaacttatattgtattgttgttgattctctcttgtcactaattcaccattttattttaatggttgcagttggtatctttgga |
174 |
Q |
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| T |
2755363 |
ggccaaattttctttgttcagcctatagtgtaaagttatgtattctttgttgtcattaattcaccattttattttaatggttgcagttggtatctttgga |
2755264 |
T |
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| Q |
175 |
tctttgtggtcatatttttgttgcttaatatcaatggtatg |
215 |
Q |
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| T |
2755263 |
tctttgtggtcatatttttgttgcttaatgtcaatggtatg |
2755223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 229 - 342
Target Start/End: Complemental strand, 2754946 - 2754835
Alignment:
| Q |
229 |
gaacaatagaagtcac-attatgtcattgtccaacaatcaaaattaagatttatgtttattgtttcaggttggcacacatacttttgggttgctttcatt |
327 |
Q |
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|||||||||||||||| |||||| ||| || |||||||||||||||||| |||| || |||||||||||||||||||| |||||| ||||||||||| |
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| T |
2754946 |
gaacaatagaagtcacaattatgcaattttc---caatcaaaattaagatttctgttcatggtttcaggttggcacacatatttttggattgctttcatt |
2754850 |
T |
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| Q |
328 |
cctgtcattgtaagt |
342 |
Q |
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||||||||||||||| |
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| T |
2754849 |
cctgtcattgtaagt |
2754835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 392 - 439
Target Start/End: Complemental strand, 2747017 - 2746970
Alignment:
| Q |
392 |
tgctttaaatagaataggtcatagatctttatcgaacgacctgaacta |
439 |
Q |
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|||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
2747017 |
tgctttaaatagaataggtcatagatctttgtcgaaccacctgaacta |
2746970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 55322485 - 55322556
Alignment:
| Q |
144 |
tattttaatggttgcagttggtatctttggatctttgtggtcatatttttgttgcttaatatcaatggtatg |
215 |
Q |
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|||||| ||||||||||||||||||||||| ||||||||||||| || |||||| | ||||||||||||||| |
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| T |
55322485 |
tattttcatggttgcagttggtatctttggctctttgtggtcatcttcttgttgttaaatatcaatggtatg |
55322556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 269 - 342
Target Start/End: Complemental strand, 27383629 - 27383556
Alignment:
| Q |
269 |
aattaagatttatgtttattgtttcaggttggcacacatacttttgggttgctttcattcctgtcattgtaagt |
342 |
Q |
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||||||||| | ||| ||||||| ||| |||||||||||| |||||| |||||||||||| ||||||||||||| |
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| T |
27383629 |
aattaagatgtttgtgtattgttccagattggcacacatatttttggtttgctttcattcatgtcattgtaagt |
27383556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 55323178 - 55323230
Alignment:
| Q |
290 |
tttcaggttggcacacatacttttgggttgctttcattcctgtcattgtaagt |
342 |
Q |
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||||||||||||| ||||| || ||| |||||||| ||||||| ||||||||| |
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| T |
55323178 |
tttcaggttggcatacatatttctggattgctttcgttcctgttattgtaagt |
55323230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 342
Target Start/End: Original strand, 1094688 - 1094745
Alignment:
| Q |
285 |
tattgtttcaggttggcacacatacttttgggttgctttcattcctgtcattgtaagt |
342 |
Q |
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||||||| ||| ||||||| |||| |||||| |||| ||||||| ||||||||||||| |
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| T |
1094688 |
tattgttccagattggcacgcatatttttggtttgcattcattcatgtcattgtaagt |
1094745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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