View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3776_high_5 (Length: 299)

Name: NF3776_high_5
Description: NF3776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3776_high_5
NF3776_high_5
[»] scaffold0272 (1 HSPs)
scaffold0272 (1-292)||(6197-6488)


Alignment Details
Target: scaffold0272 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 6197 - 6488
Alignment:
Q  1 ccttaaccggtgcccccggaacaccggttaacataaccctataagtaatgcataaacataagaaatatacacaccatattgctacatatttaatactgaa 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6197 ccttaaccggtgcccctggaacaccggttaacataaccctataagtaatgcagaaacataagaaatatacacaccatattgctacatatttaatactgaa 6296  T
Q  101 gatcgacatggaaaacatcaaatacttaaacaagatgtagagcatgtatatccccacgatcgctgcttctacgtttgtaaccatgtcgttgccgctcgcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6297 gatcgacatggaaaacatcaaatacttaaacaagatgtagagcatgtatatccccacgatcgctgcttctacgtttgtaaccatgtcgttgccgctcgcc 6396  T
Q  201 tccctcttctacatagactgttgtttctctatttctgcaggttacaaaagttgaagtaagattaaaccatatgagttgtgcattatttgtct 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6397 tccctcttctacatagactgttgtttctctatttctgcaggttacaaaagttgaagtaagattaaaccatatgagttgtgcattatttgtct 6488  T

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