View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3776_high_7 (Length: 264)

Name: NF3776_high_7
Description: NF3776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3776_high_7
NF3776_high_7
[»] chr2 (8 HSPs)
chr2 (122-246)||(14949574-14949693)
chr2 (20-97)||(12701951-12702029)
chr2 (25-97)||(12702196-12702269)
chr2 (23-97)||(12261092-12261167)
chr2 (21-97)||(2217873-2217950)
chr2 (25-123)||(21304326-21304425)
chr2 (21-83)||(25945864-25945927)
chr2 (21-84)||(36065480-36065544)
[»] chr4 (14 HSPs)
chr4 (21-123)||(55620191-55620294)
chr4 (21-123)||(55627495-55627598)
chr4 (21-97)||(1113234-1113311)
chr4 (21-121)||(24039250-24039351)
chr4 (23-97)||(17254714-17254789)
chr4 (21-83)||(51399254-51399317)
chr4 (21-97)||(1113443-1113520)
chr4 (21-97)||(8607800-8607877)
chr4 (21-97)||(24039515-24039592)
chr4 (21-97)||(29430171-29430248)
chr4 (21-97)||(36215673-36215750)
chr4 (21-90)||(43099355-43099424)
chr4 (21-83)||(49905766-49905829)
chr4 (21-97)||(48018634-48018711)
[»] chr1 (23 HSPs)
chr1 (21-96)||(52285079-52285154)
chr1 (21-97)||(7714196-7714273)
chr1 (21-97)||(47422127-47422204)
chr1 (21-122)||(52285318-52285420)
chr1 (21-97)||(39277848-39277925)
chr1 (21-130)||(19920496-19920606)
chr1 (21-121)||(45823053-45823154)
chr1 (24-120)||(16959107-16959204)
chr1 (21-97)||(28990323-28990400)
chr1 (21-97)||(39277606-39277683)
chr1 (25-97)||(47421915-47421988)
chr1 (22-97)||(27334369-27334445)
chr1 (21-120)||(30050181-30050281)
chr1 (22-97)||(36077121-36077197)
chr1 (21-118)||(30049918-30050016)
chr1 (21-97)||(10394154-10394231)
chr1 (21-97)||(10394396-10394473)
chr1 (25-97)||(16958866-16958939)
chr1 (21-97)||(28990564-28990641)
chr1 (21-97)||(45822811-45822888)
chr1 (22-97)||(49186024-49186100)
chr1 (21-97)||(36076909-36076986)
chr1 (21-95)||(15158349-15158424)
[»] chr3 (13 HSPs)
chr3 (21-97)||(49220348-49220425)
chr3 (21-123)||(31071180-31071283)
chr3 (25-97)||(49220138-49220211)
chr3 (20-123)||(11047243-11047347)
chr3 (26-123)||(31070947-31071045)
chr3 (21-97)||(28253706-28253783)
chr3 (21-118)||(18733945-18734042)
chr3 (21-97)||(52857000-52857077)
chr3 (40-124)||(18734154-18734238)
chr3 (21-76)||(46453140-46453196)
chr3 (23-83)||(4953392-4953453)
chr3 (21-97)||(11046992-11047068)
chr3 (21-97)||(26988829-26988906)
[»] chr8 (12 HSPs)
chr8 (21-123)||(36194893-36194996)
chr8 (21-124)||(36194624-36194728)
chr8 (21-122)||(31933272-31933374)
chr8 (21-117)||(12654967-12655064)
chr8 (21-124)||(31933537-31933641)
chr8 (21-97)||(13557405-13557482)
chr8 (21-119)||(12654703-12654802)
chr8 (21-83)||(21015198-21015261)
chr8 (21-97)||(18847391-18847467)
chr8 (21-83)||(10134646-10134709)
chr8 (40-97)||(13557164-13557221)
chr8 (26-97)||(18847605-18847677)
[»] chr7 (16 HSPs)
chr7 (20-97)||(8462871-8462949)
chr7 (21-97)||(32871633-32871711)
chr7 (21-97)||(6000503-6000580)
chr7 (23-97)||(4133105-4133180)
chr7 (25-97)||(43392322-43392395)
chr7 (21-83)||(16962882-16962945)
chr7 (21-90)||(6000713-6000783)
chr7 (22-123)||(25731916-25732018)
chr7 (21-97)||(18417482-18417559)
chr7 (21-93)||(32389708-32389781)
chr7 (21-76)||(24846289-24846345)
chr7 (21-84)||(30284182-30284246)
chr7 (21-83)||(30283956-30284018)
chr7 (23-83)||(24485803-24485864)
chr7 (21-97)||(37691719-37691796)
chr7 (21-84)||(472635-472699)
[»] chr5 (7 HSPs)
chr5 (21-83)||(18508788-18508851)
chr5 (21-97)||(9989980-9990056)
chr5 (21-119)||(8417561-8417660)
chr5 (21-93)||(9990189-9990262)
chr5 (20-123)||(18968767-18968871)
chr5 (21-83)||(35463829-35463892)
chr5 (21-97)||(18968533-18968610)
[»] chr6 (1 HSPs)
chr6 (20-97)||(1211660-1211738)
[»] scaffold0220 (1 HSPs)
scaffold0220 (21-83)||(26001-26064)


Alignment Details
Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 122 - 246
Target Start/End: Original strand, 14949574 - 14949693
Alignment:
Q  122 tatctttttcttcagtccttggcatgctcttcacgacctctctctatccacatttttgttgatttcttcaatttgcatgtgatc-ttccccattaaatta 220  Q
    |||||||||||||||| |    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14949574 tatctttttcttcagtgc----catgctcttcacgacctct--ctatccacatttttgttgatttcttcaatttgcatgtgatctttccccattaaatta 14949667  T
Q  221 ggatcgggaggcttatcgtgcttagt 246  Q
    |||||||||||||||| |||||||||    
T  14949668 ggatcgggaggcttattgtgcttagt 14949693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 12702029 - 12701951
Alignment:
Q  20 aatactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    |||||||||||| ||||||||| |||||||| ||| | |||||| ||||| |||||||||||||||| |||||||||||    
T  12702029 aatactttaaatgaagttaagggacctaaacggaccttttattacttatgggaccaaaccgatacttgaaatcaagtta 12701951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 12702196 - 12702269
Alignment:
Q  25 tttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    ||||||||||||||||| |||||||| ||| | |||||| ||||| |||||||||||||||| | |||||||||    
T  12702196 tttaaataaagttaagggacctaaacggaccttttattacttatgggaccaaaccgatacttgatatcaagtta 12702269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 12261092 - 12261167
Alignment:
Q  23 actttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    ||||||||||||||||||| | |||||| ||| | |||||  ||||| |||||||||||||||| |||||||||||    
T  12261092 actttaaataaagttaagggagctaaacggaccttttattgcttatgtgaccaaaccgatacttgaaatcaagtta 12261167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 2217873 - 2217950
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    ||||||||||||||||||||| || ||||| ||| | |||||| ||||| |||||||||  ||||| |||||||||||    
T  2217873 atactttaaataaagttaagggacataaacggacattttattacttatgggaccaaaccattacttgaaatcaagtta 2217950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 123
Target Start/End: Complemental strand, 21304425 - 21304326
Alignment:
Q  25 tttaaataaagttaag-gacctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaagccta 123  Q
    |||||||||||||||| || ||||||  || | |||||| ||||| ||||||||||||| || ||||||||||| |  |||||  || ||||||||||||    
T  21304425 tttaaataaagttaagcgatctaaacgaacattttattacttatgggaccaaaccgatatttgaaatcaagttaagggatcaattgagcatttaagccta 21304326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 25945927 - 25945864
Alignment:
Q  21 atactttaaataaagttaa-ggacctaaacagacttcttattatttatgagaccaaaccgatac 83  Q
    ||||||||||||||||||| |||||||||||||  | |||||| ||||| ||||||| ||||||    
T  25945927 atactttaaataaagttaagggacctaaacagatcttttattacttatgggaccaaagcgatac 25945864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 36065480 - 36065544
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatact 84  Q
    ||||||| ||||||||||||| ||| |||| ||| | |||||| ||||||||||||| |||||||    
T  36065480 atactttcaataaagttaagggaccaaaacggaccttttattacttatgagaccaaaacgatact 36065544  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 123
Target Start/End: Complemental strand, 55620294 - 55620191
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaag 119  Q
    ||||||| ||||||||||||| |||||||||||||| |||||| ||||| |||||||||||||||| ||||||||||| |  | ||||||| ||||||||    
T  55620294 atacttttaataaagttaagggacctaaacagactttttattacttatgggaccaaaccgatacttgaaatcaagttaagggaccaaaagagcatttaag 55620195  T
Q  120 ccta 123  Q
    ||||    
T  55620194 ccta 55620191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 123
Target Start/End: Complemental strand, 55627598 - 55627495
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaag 119  Q
    ||||||| ||||||||||||| |||||||||||||| |||||| ||||| |||||||||||||||| ||||||||||| |  | ||||||| ||||||||    
T  55627598 atacttttaataaagttaagggacctaaacagactttttattacttatgggaccaaaccgatacttgaaatcaagttaagggaccaaaagagcatttaag 55627499  T
Q  120 ccta 123  Q
    ||||    
T  55627498 ccta 55627495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 1113311 - 1113234
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    ||||||||||||||||||||| |||||||||||||| |||||| ||||| |||||| ||||||||| |||||||||||    
T  1113311 atactttaaataaagttaagggacctaaacagactttttattacttatgggaccaacccgatacttgaaatcaagtta 1113234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 24039351 - 24039250
Alignment:
Q  21 atactttaaataaagttaa-ggacctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaag 119  Q
    |||||||||||||| |||| ||||||||||  |||| |||||| ||||| |||||||||||||||| ||||||||||| |  |||||  |||||||||||    
T  24039351 atactttaaataaaattaaaggacctaaacgaactttttattacttatgggaccaaaccgatacttgaaatcaagttaagggatcaattgaacatttaag 24039252  T
Q  120 cc 121  Q
    ||    
T  24039251 cc 24039250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 17254714 - 17254789
Alignment:
Q  23 actttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    ||||||||||||||||||| |||||||| ||| | |||||| |||||||| |||||| |||||| |||||||||||    
T  17254714 actttaaataaagttaagggacctaaacggacattttattacttatgagatcaaaccaatacttgaaatcaagtta 17254789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 51399317 - 51399254
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatac 83  Q
    ||||||||||||||||||||| |||||||||||||| |||||| ||||| ||||||| ||||||    
T  51399317 atactttaaataaagttaagggacctaaacagactttttattacttatgggaccaaagcgatac 51399254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 1113443 - 1113520
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    ||||||||||| ||||||||| |||||||||||| | ||| |||||||| ||||||| | |||||| |||||||||||    
T  1113443 atactttaaatgaagttaagggacctaaacagaccttttaatatttatgggaccaaatcaatacttgaaatcaagtta 1113520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 8607877 - 8607800
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    ||||||||||||||||||||| || ||||| ||| | |||||| ||||| || ||||||||||||| |||||||||||    
T  8607877 atactttaaataaagttaagggacttaaacggaccttttattacttatgggatcaaaccgatacttgaaatcaagtta 8607800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 24039515 - 24039592
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    |||||| |||||||||||||| ||||||||  || | |||||| ||||||||||||||| |||||| |||||||||||    
T  24039515 atacttaaaataaagttaagggacctaaacgaaccttttattacttatgagaccaaaccaatacttgaaatcaagtta 24039592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 29430171 - 29430248
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    |||||||||||||| |||||| | ||||||| || | |||||| ||||| ||||||||| ||||||||||||||||||    
T  29430171 atactttaaataaaattaagggatctaaacataccttttattacttatgggaccaaaccaatacttaaaatcaagtta 29430248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 36215750 - 36215673
Alignment:
Q  21 atactttaaataaagttaaggac-ctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    ||||||||||||||||||||||  |||||| ||| | |||||| ||||| |||||||||||||||| |||| ||||||    
T  36215750 atactttaaataaagttaaggaatctaaacggaccttttattacttatgggaccaaaccgatacttgaaattaagtta 36215673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 43099424 - 43099355
Alignment:
Q  21 atactttaaataaagttaaggacctaaacagacttcttattatttatgagaccaaaccgatacttaaaat 90  Q
    ||||||||||||||||||||||||||||| ||| | |||||| |||||  | |||||||||| |||||||    
T  43099424 atactttaaataaagttaaggacctaaacggaccttttattacttatggaatcaaaccgatatttaaaat 43099355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 49905829 - 49905766
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatac 83  Q
    ||||||||||||||||||||| |||||||| ||| | |||||| ||||||||||||| ||||||    
T  49905829 atactttaaataaagttaagggacctaaacggaccttttattacttatgagaccaaagcgatac 49905766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 48018711 - 48018634
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    |||||||||||||| |||||| | |||||||||  | |||||| || || ||||||||||||| || |||||||||||    
T  48018711 atactttaaataaaattaagggatctaaacagatattttattacttttgggaccaaaccgatattttaaatcaagtta 48018634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 52285154 - 52285079
Alignment:
Q  21 atactttaaataaagttaaggacctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtt 96  Q
    ||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||| ||||||||||| |||||    
T  52285154 atactttaaataaagttaaggacctaaacggactttttattacttatgagaccaaaccaatacttaaaattaagtt 52285079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 7714273 - 7714196
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    ||||||||||||||||||||| ||||| |||||||| |||||| ||||| ||||||||||||||||||||||||||||    
T  7714273 atactttaaataaagttaagggacctagacagactttttattacttatgggaccaaaccgatacttaaaatcaagtta 7714196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 47422127 - 47422204
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    ||||||||||||||||||||| |||||||||||| |||||||| ||||| |||||||||||||||| |||||||||||    
T  47422127 atactttaaataaagttaagggacctaaacagacctcttattacttatgggaccaaaccgatacttgaaatcaagtta 47422204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 52285318 - 52285420
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaag 119  Q
    ||||||||||||||||||||| |||||||||||| | |||||| ||||  |||||||  ||||||||||||||||||| |  | ||||||||||||||||    
T  52285318 atactttaaataaagttaagggacctaaacagaccttttattacttataggaccaaattgatacttaaaatcaagttaagggaccaaaagaacatttaag 52285417  T
Q  120 cct 122  Q
    |||    
T  52285418 cct 52285420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 39277848 - 39277925
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    ||||||||||||||||||||| |||||||| ||||| |||||| ||||| |||||||||||||||| |||||||||||    
T  39277848 atactttaaataaagttaagggacctaaacggactttttattacttatgggaccaaaccgatacttgaaatcaagtta 39277925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 130
Target Start/End: Complemental strand, 19920606 - 19920496
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaag 119  Q
    ||||||||||||||||||||| |||||||| ||  | |||||| ||||| |||||||||||||||| ||||||||||| |  |||||  || ||||||||    
T  19920606 atactttaaataaagttaagggacctaaacggatcttttattacttatgggaccaaaccgatacttgaaatcaagttaagggatcaattgagcatttaag 19920507  T
Q  120 cctatcttttt 130  Q
    ||||| |||||    
T  19920506 cctattttttt 19920496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 45823053 - 45823154
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaag 119  Q
    ||||||||||||||||||||| |||||||| ||||| |||||| ||||| ||||||||| ||| || ||||||||||| |  |||||  |||||||||||    
T  45823053 atactttaaataaagttaagggacctaaacggactttttattacttatgggaccaaaccaatatttgaaatcaagttaagggatcaattgaacatttaag 45823152  T
Q  120 cc 121  Q
    ||    
T  45823153 cc 45823154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 120
Target Start/End: Original strand, 16959107 - 16959204
Alignment:
Q  24 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaagc 120  Q
    |||||||||||||||||| ||||||||| | || |||||| ||||| |||||||||||||||| ||||||||| |    ||||||||| |||||||||    
T  16959107 ctttaaataaagttaagggacctaaacataatttttattacttatgggaccaaaccgatacttgaaatcaagtcaaaggatcaaaagagcatttaagc 16959204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 28990400 - 28990323
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    ||||||||||||||||||||| |||||| | ||| | |||||| ||||| |||||||||||||||| |||||||||||    
T  28990400 atactttaaataaagttaagggacctaagcggaccttttattacttatgggaccaaaccgatacttgaaatcaagtta 28990323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 39277683 - 39277606
Alignment:
Q  21 atactttaaataaagttaa-ggacctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    ||||||||||||||||||| |||||||||| ||||| |||||| ||||| |||||||| ||||||| |||| ||||||    
T  39277683 atactttaaataaagttaagggacctaaacggactttttattacttatgggaccaaactgatacttgaaattaagtta 39277606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 47421988 - 47421915
Alignment:
Q  25 tttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    ||||||||||||||||| |||||||||||| | |||||| ||||| ||||||||||||| || |||||||||||    
T  47421988 tttaaataaagttaagggacctaaacagacattttattacttatgggaccaaaccgatatttgaaatcaagtta 47421915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 27334445 - 27334369
Alignment:
Q  22 tactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    |||||||||||||||||||| |||||||| ||  | |||||| ||||||||||||| |||||||| |||||||||||    
T  27334445 tactttaaataaagttaagggacctaaacggatcttttattacttatgagaccaaatcgatacttgaaatcaagtta 27334369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 30050181 - 30050281
Alignment:
Q  21 atactttaaataaagttaag-gacctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaag 119  Q
    |||||||||||||||||||| ||| ||| | ||||| |||||| || || |||||||||||||||| |||||||||||    | ||||||||||||||||    
T  30050181 atactttaaataaagttaagagacataatcggactttttattacttgtgcgaccaaaccgatacttgaaatcaagttaatggaccaaaagaacatttaag 30050280  T
Q  120 c 120  Q
    |    
T  30050281 c 30050281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 36077121 - 36077197
Alignment:
Q  22 tactttaaataaagttaagga-cctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    |||||||||||||||||| || ||||||||||| | |||||| ||||| || ||||||||||||| |||||||||||    
T  36077121 tactttaaataaagttaatgaacctaaacagaccttttattacttatgggagcaaaccgatacttgaaatcaagtta 36077197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 30050016 - 30049918
Alignment:
Q  21 atactttaaataaagttaaggacct-aaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaa 118  Q
    |||||||||||||||||||||  || |||| ||||| ||||||  ||||||||||||||||||||| |||| |||||| |  | ||||||| |||||||    
T  30050016 atactttaaataaagttaagggactcaaacggactttttattacatatgagaccaaaccgatacttgaaataaagttaagggaccaaaagagcatttaa 30049918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 10394231 - 10394154
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    ||||||||||||||||||||| | ||||||  || | |||||| ||||| |||||||||||||||| |||||||||||    
T  10394231 atactttaaataaagttaagggatctaaacgaaccttttattacttatgggaccaaaccgatacttgaaatcaagtta 10394154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 10394396 - 10394473
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    ||||||||||||||||||||| |||||||| ||| | ||| |||||||| ||||||| | |||||| |||||||||||    
T  10394396 atactttaaataaagttaagggacctaaacggaccttttaatatttatgggaccaaaacaatacttgaaatcaagtta 10394473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 16958939 - 16958866
Alignment:
Q  25 tttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    ||||||||||||||||| |||||||  ||| | |||||||||||| ||||||||||| |||| |||||||||||    
T  16958939 tttaaataaagttaagggacctaaatggaccttttattatttatgggaccaaaccgacacttgaaatcaagtta 16958866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 28990564 - 28990641
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    ||||||||||| ||||||||| |||||||| ||| | |||||| ||||| ||||||||| |||||| |||||||||||    
T  28990564 atactttaaatgaagttaagggacctaaacggaccttttattacttatgggaccaaaccaatacttgaaatcaagtta 28990641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 45822888 - 45822811
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    ||||||||||||||||||||| |||||||| ||||| |||||| ||||| |||||||  ||||||| |||| ||||||    
T  45822888 atactttaaataaagttaaggaacctaaacggactttttattacttatgggaccaaattgatacttgaaattaagtta 45822811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 49186100 - 49186024
Alignment:
Q  22 tactttaaataaagttaa-ggacctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    |||||||||||||||||| |||| ||||| ||| | |||||| |||| ||||||||| ||||||| |||||||||||    
T  49186100 tactttaaataaagttaaaggacgtaaacggaccttttattacttataagaccaaactgatacttgaaatcaagtta 49186024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 36076986 - 36076909
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    ||||||||||||||||||||| ||||||||  || | |||||| ||||| || ||| ||||||||| |||||||||||    
T  36076986 atactttaaataaagttaagggacctaaacgaaccttttattacttatgggatcaagccgatacttgaaatcaagtta 36076909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 15158424 - 15158349
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagt 95  Q
    |||||| ||||||| |||||| ||||||||  || | |||||| ||||| |||||||||||||||| |||||||||    
T  15158424 atacttgaaataaatttaagggacctaaacgaaccttttattacttatgggaccaaaccgatacttgaaatcaagt 15158349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 49220348 - 49220425
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||| |||| ||||||    
T  49220348 atactttaaataaagttaagggacctaaacagactttttattatttatgggaccaaaccgatacttgaaattaagtta 49220425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 21 - 123
Target Start/End: Original strand, 31071180 - 31071283
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaag 119  Q
    ||||||||||||||||||||| |||||||||||| | |||||||||||| || ||||||||||||| ||||||||||| |  |  |||||| ||||||||    
T  31071180 atactttaaataaagttaagggacctaaacagaccttttattatttatgggatcaaaccgatacttgaaatcaagttaagggaagaaaagagcatttaag 31071279  T
Q  120 ccta 123  Q
    ||||    
T  31071280 ccta 31071283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 49220211 - 49220138
Alignment:
Q  25 tttaaataaagttaa-ggacctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    ||||||||||||||| |||||||||| ||||| |||||||||||| ||| ||||||||||||||||||||||||    
T  49220211 tttaaataaagttaaaggacctaaacggactttttattatttatgggactaaaccgatacttaaaatcaagtta 49220138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 11047243 - 11047347
Alignment:
Q  20 aatactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaa 118  Q
    |||||||||||||||||||||| |||||||| ||| | |||||| ||||| |||||||||||||||| ||||||||||| |  | |||  ||||||||||    
T  11047243 aatactttaaataaagttaagggacctaaacggaccttttattacttatgggaccaaaccgatacttgaaatcaagttaagggaccaattgaacatttaa 11047342  T
Q  119 gccta 123  Q
    |||||    
T  11047343 gccta 11047347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 123
Target Start/End: Complemental strand, 31071045 - 31070947
Alignment:
Q  26 ttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaagccta 123  Q
    |||||||||||||||| || ||||| ||  | |||||| ||||| |||||||| ||||||||||||||||||| |  | ||||||||||||||||||||    
T  31071045 ttaaataaagttaagggacttaaacggatcttttattacttatgggaccaaactgatacttaaaatcaagttaagggaccaaaagaacatttaagccta 31070947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 28253706 - 28253783
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    ||||||||||||||||||||| || ||| ||||| | |||||||||||| |||||| ||||||||| |||||||||||    
T  28253706 atactttaaataaagttaagggacttaatcagaccttttattatttatgggaccaatccgatacttgaaatcaagtta 28253783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 18734042 - 18733945
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaa 118  Q
    ||||||||||||||||||||| || ||||||||||| ||| |||| ||| |||||||| ||||||| ||||||||||| |  | ||||||||| |||||    
T  18734042 atactttaaataaagttaagggacttaaacagactttttactatt-atgggaccaaactgatacttgaaatcaagttaagagaccaaaagaacgtttaa 18733945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 52857077 - 52857000
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    ||||||||||||||||||||| | |||||| ||| | |||||| ||||| |||||||||||||||| |||| ||||||    
T  52857077 atactttaaataaagttaaggtatctaaacggaccttttattacttatgggaccaaaccgatacttgaaattaagtta 52857000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 40 - 124
Target Start/End: Original strand, 18734154 - 18734238
Alignment:
Q  40 ggacctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaagcctat 124  Q
    |||||||||||||||| |||||| ||| | |||||| |||||||||||||| ||||||    ||||||||| |||||||| ||||    
T  18734154 ggacctaaacagactttttattacttaagggaccaagccgatacttaaaataaagttaatggatcaaaagagcatttaagtctat 18734238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 46453140 - 46453196
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaa 76  Q
    ||||||||||||||||||||| |||||||| ||||| |||||| |||||||||||||    
T  46453140 atactttaaataaagttaagggacctaaacggactttttattacttatgagaccaaa 46453196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 4953392 - 4953453
Alignment:
Q  23 actttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatac 83  Q
    ||||||||||||||||||| || ||||||||||| |||||| ||||| ||||||| ||||||    
T  4953392 actttaaataaagttaagggacttaaacagactttttattacttatgggaccaaaacgatac 4953453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 11047068 - 11046992
Alignment:
Q  21 atactttaaataaagttaaggacctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    |||||| |||||||||||| ||||||||  ||| | |||||  ||||| |||||||||||||| | |||||||||||    
T  11047068 atacttgaaataaagttaaagacctaaagggaccttttatttcttatgggaccaaaccgatacatgaaatcaagtta 11046992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 26988906 - 26988829
Alignment:
Q  21 atactttaaataaagttaa-ggacctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    ||||||||||||||||||| |||||||||  ||| | |||||| ||||| ||| |||| ||||||| |||| ||||||    
T  26988906 atactttaaataaagttaagggacctaaaaggacattttattacttatgggacaaaactgatacttgaaataaagtta 26988829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 21 - 123
Target Start/End: Original strand, 36194893 - 36194996
Alignment:
Q  21 atactttaaataaagttaa-ggacctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaag 119  Q
    ||||||||||||||||||| |||||||||| || || | |||||||||| |||||||||||||||||||||||||||| |  |  |||||| ||||||||    
T  36194893 atactttaaataaagttaaaggacctaaacggatttttgattatttatgggaccaaaccgatacttaaaatcaagttaagggactaaaagagcatttaag 36194992  T
Q  120 ccta 123  Q
    ||||    
T  36194993 ccta 36194996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 124
Target Start/End: Complemental strand, 36194728 - 36194624
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaag 119  Q
    ||||||||||||||||||||| | |||||||||||| |||||| ||||| ||||||| |||||||| ||||||||||| |  |  |||||| ||||||||    
T  36194728 atactttaaataaagttaagggatctaaacagactttttattacttatgggaccaaaacgatacttgaaatcaagttaagggactaaaagagcatttaag 36194629  T
Q  120 cctat 124  Q
    |||||    
T  36194628 cctat 36194624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 31933374 - 31933272
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaag 119  Q
    ||||||||||||||||||||| | ||||| |||| | |||||| ||||| ||||||||| |||||||||||||| ||| |  | ||||||||||||||||    
T  31933374 atactttaaataaagttaagggatctaaatagaccttttattacttatgggaccaaaccaatacttaaaatcaaattaagggaccaaaagaacatttaag 31933275  T
Q  120 cct 122  Q
    |||    
T  31933274 cct 31933272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 12654967 - 12655064
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacattta 117  Q
    ||||||||||||||||||||| |||||||| ||  | |||||| ||||| |||||||||||||||| ||||||||||| |  ||||||||| ||||||    
T  12654967 atactttaaataaagttaagggacctaaacggaacttttattacttatgggaccaaaccgatacttgaaatcaagttaagggatcaaaagagcattta 12655064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 124
Target Start/End: Original strand, 31933537 - 31933641
Alignment:
Q  21 atactttaaataaagttaa-ggacctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaag 119  Q
    ||||||||||||||||||  ||| |||||  ||||| |||||| ||||| |||||||||||||||| ||||||||||| |  | ||||||| ||||||||    
T  31933537 atactttaaataaagttagcggatctaaatggactttttattacttatgggaccaaaccgatacttgaaatcaagttaagggaccaaaagagcatttaag 31933636  T
Q  120 cctat 124  Q
    |||||    
T  31933637 cctat 31933641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 13557405 - 13557482
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    ||||||||||| ||||||||| |||||||| ||| | |||||| ||||| |||||||||||||||| |||||||||||    
T  13557405 atactttaaatgaagttaagggacctaaacggaccttttattacttatgggaccaaaccgatacttgaaatcaagtta 13557482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 12654802 - 12654703
Alignment:
Q  21 atactttaaataaagttaaggac-ctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaag 119  Q
    ||||||||||||||||||||||  |||||  ||| | |||||||||||| ||||||||||| |||| |||| |||||| |  | ||||||| ||||||||    
T  12654802 atactttaaataaagttaaggaaactaaatggaccttttattatttatgggaccaaaccgacacttgaaataaagttaagggaccaaaagagcatttaag 12654703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 21015198 - 21015261
Alignment:
Q  21 atactttaaataaagttaa-ggacctaaacagacttcttattatttatgagaccaaaccgatac 83  Q
    ||||||||||||||||||| ||||| |||||||||| |||||| ||||| ||||||| ||||||    
T  21015198 atactttaaataaagttaagggacccaaacagactttttattacttatgggaccaaagcgatac 21015261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 18847467 - 18847391
Alignment:
Q  21 atactttaaataaagttaa-ggacctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    ||||||||||||||||||| |||| |||||| || | |||||| |||||||||| || |||||||| |||||||||||    
T  18847467 atactttaaataaagttaagggacataaacaaaccttttattacttatgagacc-aatcgatacttgaaatcaagtta 18847391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 10134709 - 10134646
Alignment:
Q  21 atactttaaataaagttaa-ggacctaaacagacttcttattatttatgagaccaaaccgatac 83  Q
    ||||||||||||||||||| |||||||||| ||| | |||||| ||||| ||||||| ||||||    
T  10134709 atactttaaataaagttaagggacctaaacggaccttttattacttatgggaccaaagcgatac 10134646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 13557221 - 13557164
Alignment:
Q  40 ggacctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    ||||||||||  || | |||||| ||||| |||||||||||||||| |||||||||||    
T  13557221 ggacctaaacgaaccttttattacttatgggaccaaaccgatacttgaaatcaagtta 13557164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 18847605 - 18847677
Alignment:
Q  26 ttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    ||||| |||||||||| || |||| |||||| |||||| ||||| ||| |||| ||||||| |||||||||||    
T  18847605 ttaaacaaagttaagggacttaaatagactttttattacttatgggacaaaactgatacttgaaatcaagtta 18847677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 8462949 - 8462871
Alignment:
Q  20 aatactttaaataaagttaa-ggacctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    |||||||||||||||||||| |||||||||||||| | |||||||||||| |||||||| |||| || |||||||||||    
T  8462949 aatactttaaataaagttaaaggacctaaacagacattttattatttatgggaccaaactgatatttgaaatcaagtta 8462871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 32871711 - 32871633
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttctt-attatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    ||||||||||||||||||||| ||||||||||| || || |||||||||| ||||||||| ||||||||||||||||||    
T  32871711 atactttaaataaagttaagggacctaaacagatttttttattatttatgggaccaaaccaatacttaaaatcaagtta 32871633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 6000580 - 6000503
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    ||||||||||||||||||||| |||||||  ||||| |||||| ||||| |||||||||||||||| |||||||||||    
T  6000580 atactttaaataaagttaagggacctaaatggactttttattacttatgggaccaaaccgatacttgaaatcaagtta 6000503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 4133105 - 4133180
Alignment:
Q  23 actttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    ||||||||||||||||||| |||||||| ||| | |||||| |||||||| |||||| |||||| |||||||||||    
T  4133105 actttaaataaagttaagggacctaaacggacattttattacttatgagatcaaaccaatacttgaaatcaagtta 4133180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 43392395 - 43392322
Alignment:
Q  25 tttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    ||||||||||||||||| |||||||| ||| | ||| |||||||| ||||||||| |||||| |||||||||||    
T  43392395 tttaaataaagttaagggacctaaacggaccttttaatatttatgggaccaaaccaatacttgaaatcaagtta 43392322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 16962945 - 16962882
Alignment:
Q  21 atactttaaataaagttaa-ggacctaaacagacttcttattatttatgagaccaaaccgatac 83  Q
    ||||||||||||||||||| |||||||||| ||| | |||||| ||||||||||||| ||||||    
T  16962945 atactttaaataaagttaatggacctaaacggaccttttattacttatgagaccaaagcgatac 16962882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 6000713 - 6000783
Alignment:
Q  21 atactttaaataaagttaa-ggacctaaacagacttcttattatttatgagaccaaaccgatacttaaaat 90  Q
    ||||||||||||||||||| |||||||||| ||||| |||||| ||||  |||||||| ||||||| ||||    
T  6000713 atactttaaataaagttaagggacctaaacggactttttattacttataggaccaaactgatacttgaaat 6000783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 25732018 - 25731916
Alignment:
Q  22 tactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaagc 120  Q
    ||||| |||| ||||||||| | |||| ||||| | |||||| ||||| ||| |||||||||||| ||||||||||| |  | ||||||| |||||||||    
T  25732018 tacttgaaatcaagttaagggatctaagcagaccttttattacttatgggactaaaccgatacttgaaatcaagttaagggaccaaaagagcatttaagc 25731919  T
Q  121 cta 123  Q
    |||    
T  25731918 cta 25731916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 18417482 - 18417559
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    ||||||||||||||||||||| |||||||  ||| | |||||||||||  || ||||||||||||| |||| ||||||    
T  18417482 atactttaaataaagttaagggacctaaatggaccttttattatttataggatcaaaccgatacttgaaataaagtta 18417559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 32389708 - 32389781
Alignment:
Q  21 atactttaaataaagttaa-ggacctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaa 93  Q
    ||||||||||||||||||| |||| ||||||||| | |||||| ||||  |||||||| ||||||| |||||||    
T  32389708 atactttaaataaagttaagggacttaaacagacattttattacttattggaccaaactgatacttgaaatcaa 32389781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 24846345 - 24846289
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaa 76  Q
    ||||||||||||||||||||| |||||||| ||| | |||||| |||||||||||||    
T  24846345 atactttaaataaagttaagggacctaaacggaccttttattacttatgagaccaaa 24846289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 30284182 - 30284246
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatact 84  Q
    ||||||| ||||||||||||| |||||||| ||| | |||||| ||||||||||||| |||||||    
T  30284182 atactttcaataaagttaagggacctaaacggacattttattacttatgagaccaaagcgatact 30284246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 30284018 - 30283956
Alignment:
Q  21 atactttaaataaagttaaggacctaaacagacttcttattatttatgagaccaaaccgatac 83  Q
    ||||||||||| |||||||||  |||||| ||| | |||||| ||||||||||||| ||||||    
T  30284018 atactttaaatgaagttaagggactaaacggaccttttattacttatgagaccaaaacgatac 30283956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 24485803 - 24485864
Alignment:
Q  23 actttaaataaagttaa-ggacctaaacagacttcttattatttatgagaccaaaccgatac 83  Q
    ||||||||||||||||| |||| ||||| ||||| |||||| ||||| ||||||| ||||||    
T  24485803 actttaaataaagttaagggacttaaacggactttttattacttatgggaccaaaacgatac 24485864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 37691796 - 37691719
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    |||||||||||||| |||||| || ||| | ||||| |||||| |||||  | ||||||||||||| |||||||||||    
T  37691796 atactttaaataaaattaagggacttaatcggactttttattacttatggaatcaaaccgatacttgaaatcaagtta 37691719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 472699 - 472635
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatact 84  Q
    ||||||| ||||||||||||| ||||||||  || | |||||| ||||||||||||| |||||||    
T  472699 atactttcaataaagttaagggacctaaacgcaccttttattacttatgagaccaaaacgatact 472635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 18508788 - 18508851
Alignment:
Q  21 atactttaaataaagttaagga-cctaaacagacttcttattatttatgagaccaaaccgatac 83  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||| ||||||    
T  18508788 atactttaaataaagttaaggaacctaaacagactttttattatttatgggaccaaatcgatac 18508851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 9990056 - 9989980
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    ||||||||||||||||||||| ||||||||| || | |||||| ||||| |||||||||||| |||||||||||||||    
T  9990056 atactttaaataaagttaagggacctaaacataccttttattaattatg-gaccaaaccgattcttaaaatcaagtta 9989980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 8417660 - 8417561
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaag 119  Q
    ||||||||||||||||||||| |||||||| ||  | |||||| || ||||| ||||||||||||| ||||||||||| |  | ||||||| ||||||||    
T  8417660 atactttaaataaagttaagggacctaaacggaacttttattacttgtgagatcaaaccgatacttgaaatcaagttaagggaccaaaagagcatttaag 8417561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 9990189 - 9990262
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaa 93  Q
    ||||||||||||||||||||| |||||||||||  | | ||||||||||| | ||||| |||||||||||||||    
T  9990189 atactttaaataaagttaagggacctaaacagatctttcattatttatgaaatcaaactgatacttaaaatcaa 9990262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 18968767 - 18968871
Alignment:
Q  20 aatactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaa 118  Q
    ||||||||| |||||||||||| | | ||||| || | |||||||||||| || ||||||||||||| ||||||||||| | ||||||  || |||||||    
T  18968767 aatactttatataaagttaagggatccaaacataccttttattatttatgggatcaaaccgatacttgaaatcaagttaaggaatcaattgagcatttaa 18968866  T
Q  119 gccta 123  Q
     ||||    
T  18968867 accta 18968871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 35463829 - 35463892
Alignment:
Q  21 atactttaaataaagttaa-ggacctaaacagacttcttattatttatgagaccaaaccgatac 83  Q
    ||||||||||||||||||| ||||| |||||||||| |||||| ||||| ||||||| ||||||    
T  35463829 atactttaaataaagttaagggaccgaaacagactttttattacttatgggaccaaagcgatac 35463892  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 18968610 - 18968533
Alignment:
Q  21 atactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    ||||||||||||||||||||| |||||||| ||  | |||||  |||||| |||||||| |||||| |||||||||||    
T  18968610 atactttaaataaagttaagggacctaaacggatcttttattgattatgaaaccaaaccaatacttgaaatcaagtta 18968533  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 1211660 - 1211738
Alignment:
Q  20 aatactttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 97  Q
    |||||||||||||||||||||| | |||||||||  | |||||| |||||||||||||| ||||||| |||||||||||    
T  1211660 aatactttaaataaagttaagggatctaaacagatcttttattacttatgagaccaaacagatacttgaaatcaagtta 1211738  T

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Target: scaffold0220 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 26064 - 26001
Alignment:
Q  21 atactttaaataaagttaa-ggacctaaacagacttcttattatttatgagaccaaaccgatac 83  Q
    ||||||||||||||||||| |||| |||||| |||| |||||| ||||| ||||||| ||||||    
T  26064 atactttaaataaagttaagggacttaaacaaactttttattacttatgggaccaaagcgatac 26001  T

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